Wall clock time and date at job start Tue Mar 31 2020 06:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47193 * 2 1 4 4 O 1.42897 * 109.47246 * 179.97438 * 3 2 1 5 5 C 1.42893 * 114.00235 * 180.02562 * 4 3 2 6 6 H 1.08995 * 110.87499 * 333.84289 * 5 4 3 7 7 C 1.55138 * 110.99348 * 97.73300 * 5 4 3 8 8 C 1.54318 * 103.02219 * 153.74305 * 7 5 4 9 9 N 1.47437 * 107.23091 * 337.71934 * 8 7 5 10 10 C 1.46909 * 110.99919 * 236.73657 * 9 8 7 11 11 C 1.50698 * 109.46880 * 176.17004 * 10 9 8 12 12 C 1.37634 * 120.12625 * 255.11762 * 11 10 9 13 13 C 1.38618 * 120.24653 * 180.02562 * 12 11 10 14 14 C 1.38655 * 120.49968 * 359.97438 * 13 12 11 15 15 C 1.37594 * 120.25140 * 0.02562 * 14 13 12 16 16 C 1.40694 * 120.12636 * 74.85206 * 11 10 9 17 17 C 1.41390 * 120.24647 * 359.97438 * 16 11 10 18 18 H 1.08004 * 120.00198 * 330.75206 * 17 16 11 19 19 C 1.39943 * 120.00143 * 150.74600 * 17 16 11 20 20 N 1.30819 * 120.00200 * 347.65910 * 19 17 16 21 21 Si 1.86806 * 120.00220 * 167.65643 * 19 17 16 22 22 H 1.48501 * 109.47028 * 90.00107 * 21 19 17 23 23 H 1.48504 * 109.47218 * 210.00156 * 21 19 17 24 24 H 1.48500 * 109.47052 * 330.00017 * 21 19 17 25 25 C 1.47837 * 108.56995 * 359.00703 * 9 8 7 26 26 H 1.08997 * 109.46842 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47073 * 300.00011 * 1 2 3 28 28 H 1.09000 * 109.46892 * 60.00163 * 1 2 3 29 29 H 1.08999 * 109.46731 * 239.99654 * 2 1 3 30 30 H 1.09001 * 109.46631 * 120.00320 * 2 1 3 31 31 H 1.09003 * 109.46867 * 60.00015 * 3 2 1 32 32 H 1.08995 * 109.47074 * 300.00206 * 3 2 1 33 33 H 1.09005 * 110.70419 * 35.36076 * 7 5 4 34 34 H 1.09000 * 110.70839 * 272.13126 * 7 5 4 35 35 H 1.09002 * 109.89012 * 218.30800 * 8 7 5 36 36 H 1.09008 * 109.88414 * 97.12349 * 8 7 5 37 37 H 1.09002 * 109.46989 * 296.17140 * 10 9 8 38 38 H 1.08996 * 109.46498 * 56.17383 * 10 9 8 39 39 H 1.08004 * 119.87959 * 0.02562 * 12 11 10 40 40 H 1.08002 * 119.75092 * 179.97438 * 13 12 11 41 41 H 1.08004 * 119.86934 * 180.02562 * 14 13 12 42 42 H 1.07997 * 120.12862 * 179.97438 * 15 14 13 43 43 H 0.97005 * 120.00580 * 180.02562 * 20 19 17 44 44 H 1.09006 * 110.37450 * 142.92507 * 25 9 8 45 45 H 1.09001 * 110.37615 * 265.15321 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0503 2.7479 0.0012 6 1 3.3734 3.4746 -0.4478 7 6 4.4538 3.1759 1.4368 8 6 5.5993 4.1803 1.1911 9 7 6.1534 3.8927 -0.1446 10 6 7.5936 3.6126 -0.0679 11 6 8.1046 3.2321 -1.4336 12 6 8.3932 1.9175 -1.7215 13 6 8.8640 1.5647 -2.9767 14 6 9.0490 2.5292 -3.9555 15 6 8.7670 3.8495 -3.6899 16 6 8.2833 4.2184 -2.4208 17 6 7.9843 5.5712 -2.1384 18 1 7.2202 5.8158 -1.4152 19 6 8.6783 6.5932 -2.7957 20 7 9.7564 6.3150 -3.4825 21 14 8.0654 8.3548 -2.6925 22 1 8.6844 9.0265 -1.5216 23 1 8.4364 9.0816 -3.9333 24 1 6.5882 8.3569 -2.5406 25 6 5.4206 2.7456 -0.7213 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 4.8090 2.3188 2.0090 34 1 3.6190 3.6598 1.9437 35 1 6.3727 4.0535 1.9487 36 1 5.2119 5.1989 1.2204 37 1 8.1185 4.5016 0.2818 38 1 7.7673 2.7911 0.6270 39 1 8.2524 1.1579 -0.9667 40 1 9.0883 0.5308 -3.1939 41 1 9.4159 2.2429 -4.9302 42 1 8.9123 4.5991 -4.4536 43 1 10.2378 7.0235 -3.9379 44 1 5.2841 2.8829 -1.7940 45 1 5.9543 1.8160 -0.5234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235523401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:37 Heat of formation + Delta-G solvation = -47.418426 kcal Electronic energy + Delta-G solvation = -23208.462931 eV Core-core repulsion = 19996.395326 eV Total energy + Delta-G solvation = -3212.067605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59217 -39.33491 -37.95267 -35.40953 -34.64373 -33.26924 -31.32938 -30.37508 -29.61699 -27.29734 -26.81895 -25.63543 -22.82539 -22.57339 -22.05179 -21.91639 -21.00693 -18.95745 -18.03017 -17.22129 -16.98944 -16.66791 -16.33422 -15.95157 -15.64875 -15.18413 -14.80182 -14.72107 -14.59275 -14.34767 -14.07281 -13.62512 -13.42702 -13.29601 -13.03748 -12.93281 -12.75194 -12.69220 -12.65297 -12.43178 -12.34518 -12.11397 -12.02824 -11.81874 -11.70436 -11.54141 -11.29614 -11.02105 -10.98541 -10.46166 -9.22897 -9.16529 -9.02175 -8.50260 -6.20565 1.02374 1.14718 1.41927 1.53292 1.58431 2.27709 2.51772 2.85388 3.33898 3.69562 3.71235 3.90837 4.03422 4.06652 4.16448 4.22530 4.36429 4.40660 4.44080 4.52074 4.53470 4.63462 4.67853 4.70614 4.78254 4.81455 4.85229 4.90584 4.95020 5.06940 5.12761 5.15187 5.22148 5.24121 5.32314 5.37533 5.42946 5.57119 5.82792 5.98619 6.18526 6.19964 6.26192 6.34084 6.36760 6.51037 6.84241 7.10836 7.17215 8.46697 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.004275 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.305124 B = 6548.584044 C = 7377.198495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C 0.055 3.945 4 O -0.397 6.397 5 C 0.084 3.916 6 H 0.081 0.919 7 C -0.147 4.147 8 C 0.039 3.961 9 N -0.526 5.526 10 C 0.132 3.868 11 C -0.198 4.198 12 C -0.092 4.092 13 C -0.242 4.242 14 C -0.115 4.115 15 C -0.190 4.190 16 C 0.102 3.898 17 C -0.470 4.470 18 H 0.092 0.908 19 C 0.029 3.971 20 N -0.838 5.838 21 Si 0.975 3.025 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.259 1.259 25 C 0.063 3.937 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.030 0.970 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.282 0.718 44 H 0.054 0.946 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.213 -5.466 8.606 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.021 4.021 4 O -0.316 6.316 5 C 0.026 3.974 6 H 0.099 0.901 7 C -0.185 4.185 8 C -0.088 4.088 9 N -0.251 5.251 10 C 0.006 3.994 11 C -0.200 4.200 12 C -0.111 4.111 13 C -0.262 4.262 14 C -0.134 4.134 15 C -0.209 4.209 16 C 0.100 3.900 17 C -0.500 4.500 18 H 0.110 0.890 19 C -0.183 4.183 20 N -0.466 5.466 21 Si 0.797 3.203 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.065 4.065 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.982 -5.082 8.174 16.974 hybrid contribution 0.425 0.266 -0.012 0.502 sum -13.556 -4.815 8.162 16.540 Atomic orbital electron populations 1.21675 0.93110 1.02923 1.02517 1.21480 0.97022 0.94770 1.02765 1.22793 0.79747 0.98775 1.00772 1.87859 1.21156 1.27527 1.95014 1.23182 0.93997 0.84549 0.95693 0.90102 1.23131 0.99249 0.99364 0.96759 1.22857 0.96511 0.99932 0.89521 1.63566 1.03018 1.37219 1.21346 1.20667 0.87431 0.98264 0.93084 1.19861 1.10902 0.93476 0.95784 1.20693 0.99275 0.94883 0.96257 1.20664 1.12169 0.98185 0.95147 1.20934 1.00419 0.93628 0.98415 1.21345 1.07120 0.94721 0.97753 1.17714 0.88541 0.93516 0.90248 1.19931 1.18316 0.90573 1.21182 0.89018 1.26749 0.93486 1.05399 0.92695 1.69898 1.14079 1.36399 1.26215 0.85301 0.79785 0.76736 0.78447 1.18924 1.19875 1.18316 1.22692 0.92887 0.92454 0.98450 0.91188 0.91767 0.92269 0.92088 0.91426 0.92142 0.93125 0.90903 0.88554 0.92050 0.89906 0.91769 0.95241 0.87640 0.87051 0.87835 0.88594 0.90784 0.92797 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.91 71.99 0.71 -1.13 16 2 C -0.12 -2.17 6.30 30.60 0.19 -1.98 16 3 C 0.06 1.14 5.77 71.98 0.42 1.56 16 4 O -0.40 -11.13 10.15 -148.98 -1.51 -12.64 16 5 C 0.08 2.40 3.54 31.98 0.11 2.51 16 6 H 0.08 2.17 7.83 -2.39 -0.02 2.16 16 7 C -0.15 -3.55 6.68 31.77 0.21 -3.34 16 8 C 0.04 1.12 6.90 86.65 0.60 1.72 16 9 N -0.53 -19.60 4.58 -890.09 -4.08 -23.67 16 10 C 0.13 5.44 3.93 85.55 0.34 5.78 16 11 C -0.20 -9.49 4.49 -19.41 -0.09 -9.57 16 12 C -0.09 -4.14 8.92 22.22 0.20 -3.95 16 13 C -0.24 -10.93 10.05 22.46 0.23 -10.70 16 14 C -0.12 -5.60 10.02 22.22 0.22 -5.38 16 15 C -0.19 -10.32 8.66 22.73 0.20 -10.13 16 16 C 0.10 5.52 5.54 -21.29 -0.12 5.41 16 17 C -0.47 -25.13 8.16 23.46 0.19 -24.94 16 18 H 0.09 4.79 6.73 -2.91 -0.02 4.77 16 19 C 0.03 1.51 5.22 85.26 0.45 1.95 16 20 N -0.84 -45.10 10.94 21.83 0.24 -44.87 16 21 Si 0.98 39.48 29.58 68.60 2.03 41.51 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 25 C 0.06 2.29 5.41 86.77 0.47 2.76 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.02 8.12 -2.39 -0.02 1.00 16 33 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.66 7.57 -2.39 -0.02 1.64 16 36 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.06 2.78 7.67 -2.39 -0.02 2.76 16 38 H 0.03 1.11 7.93 -2.39 -0.02 1.09 16 39 H 0.11 4.18 8.00 -2.91 -0.02 4.16 16 40 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 41 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.10 5.50 6.30 -2.91 -0.02 5.48 16 43 H 0.28 13.89 8.30 -92.70 -0.77 13.12 16 44 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.04 1.57 7.16 -2.39 -0.02 1.55 16 Total: -1.00 -60.21 359.23 1.94 -58.27 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.94 Total: 30.84 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 4.33 Total: -49.44 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -3.84 Total: -68.54 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -1.51 Total: -12.64 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -60.21 1.94 -58.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.851 kcal (2) G-P(sol) polarization free energy of solvation -60.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds