Wall clock time and date at job start Tue Mar 31 2020 06:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47369 * 2 1 4 4 O 1.42902 * 109.46999 * 119.99929 * 2 1 3 5 5 C 1.42898 * 114.00206 * 90.00015 * 4 2 1 6 6 H 1.09008 * 110.87466 * 32.39105 * 5 4 2 7 7 C 1.55135 * 110.99054 * 268.54639 * 5 4 2 8 8 C 1.54321 * 103.01914 * 206.25152 * 7 5 4 9 9 N 1.47439 * 107.23287 * 22.28660 * 8 7 5 10 10 C 1.46899 * 111.00120 * 123.25604 * 9 8 7 11 11 C 1.50697 * 109.47199 * 69.87123 * 10 9 8 12 12 C 1.37630 * 120.13048 * 260.02141 * 11 10 9 13 13 C 1.38621 * 120.25205 * 179.97438 * 12 11 10 14 14 C 1.38663 * 120.49609 * 359.97438 * 13 12 11 15 15 C 1.37592 * 120.24907 * 0.02562 * 14 13 12 16 16 C 1.40703 * 120.12842 * 80.00034 * 11 10 9 17 17 C 1.41405 * 120.23888 * 0.02562 * 16 11 10 18 18 H 1.07994 * 120.00358 * 334.14577 * 17 16 11 19 19 C 1.39945 * 119.99498 * 154.15021 * 17 16 11 20 20 N 1.30820 * 120.00362 * 343.58143 * 19 17 16 21 21 Si 1.86800 * 119.99690 * 163.57841 * 19 17 16 22 22 H 1.48500 * 109.47072 * 90.00336 * 21 19 17 23 23 H 1.48508 * 109.47218 * 210.00312 * 21 19 17 24 24 H 1.48498 * 109.47322 * 330.00159 * 21 19 17 25 25 C 1.47845 * 108.56664 * 0.98463 * 9 8 7 26 26 H 1.09003 * 109.47300 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46873 * 300.00467 * 1 2 3 28 28 H 1.09001 * 109.46979 * 60.00091 * 1 2 3 29 29 H 1.09003 * 109.47184 * 239.99815 * 2 1 3 30 30 H 1.09004 * 109.47284 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46996 * 299.99898 * 3 2 1 32 32 H 1.08996 * 109.47504 * 59.99919 * 3 2 1 33 33 H 1.09001 * 110.70722 * 87.87249 * 7 5 4 34 34 H 1.08998 * 110.70870 * 324.63667 * 7 5 4 35 35 H 1.08994 * 109.88960 * 262.87338 * 8 7 5 36 36 H 1.09000 * 109.88595 * 141.68681 * 8 7 5 37 37 H 1.09000 * 109.47013 * 309.87043 * 10 9 8 38 38 H 1.08999 * 109.47110 * 189.87249 * 10 9 8 39 39 H 1.08001 * 119.87869 * 359.97438 * 12 11 10 40 40 H 1.07996 * 119.74742 * 180.02562 * 13 12 11 41 41 H 1.08000 * 119.86817 * 180.27933 * 14 13 12 42 42 H 1.07999 * 120.12244 * 179.97438 * 15 14 13 43 43 H 0.97001 * 119.99960 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.37460 * 94.73611 * 25 9 8 45 45 H 1.08998 * 110.37490 * 217.07246 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0782 0.9887 6 1 2.5052 -2.3016 -0.0336 7 6 0.9214 -2.8686 1.3723 8 6 1.4755 -4.2510 1.7766 9 7 2.8910 -4.0638 2.1442 10 6 3.1470 -4.5374 3.5110 11 6 3.0482 -6.0407 3.5485 12 6 1.9017 -6.6464 4.0099 13 6 1.8078 -8.0289 4.0450 14 6 2.8650 -8.8171 3.6162 15 6 4.0208 -8.2332 3.1510 16 6 4.1275 -6.8305 3.1115 17 6 5.3104 -6.2193 2.6355 18 1 5.2727 -5.2262 2.2129 19 6 6.5300 -6.9014 2.7119 20 7 6.6489 -7.9431 3.4944 21 14 7.9880 -6.3246 1.6966 22 1 8.7754 -5.3371 2.4777 23 1 8.8476 -7.4877 1.3594 24 1 7.5001 -5.6905 0.4456 25 6 3.2270 -2.6304 2.0085 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 0.2518 -2.9570 0.5168 34 1 0.4138 -2.3959 2.2131 35 1 1.3986 -4.9414 0.9367 36 1 0.9189 -4.6384 2.6299 37 1 2.4092 -4.1078 4.1886 38 1 4.1463 -4.2312 3.8204 39 1 1.0719 -6.0422 4.3459 40 1 0.9042 -8.4956 4.4082 41 1 2.7793 -9.8934 3.6437 42 1 4.8431 -8.8490 2.8179 43 1 7.4942 -8.4161 3.5471 44 1 3.1200 -2.1231 2.9673 45 1 4.2413 -2.5129 1.6272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235528968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:42 Heat of formation + Delta-G solvation = -31.089709 kcal Electronic energy + Delta-G solvation = -23294.979430 eV Core-core repulsion = 20083.619891 eV Total energy + Delta-G solvation = -3211.359539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.37426 -37.90441 -36.72276 -33.55686 -32.95342 -31.50772 -29.45093 -29.20392 -27.79967 -27.34947 -25.38409 -24.12168 -21.52295 -21.04688 -20.89686 -20.60028 -19.25876 -17.09413 -16.85729 -16.07107 -15.22485 -14.93995 -14.73428 -14.51572 -14.31715 -13.83512 -13.58006 -13.23347 -12.86442 -12.79961 -12.52782 -12.50632 -12.40849 -12.20791 -11.72733 -11.55542 -11.51462 -11.35373 -11.06682 -11.00469 -10.94105 -10.79013 -10.69683 -10.50654 -10.36543 -10.27014 -9.49465 -9.42040 -9.22412 -9.07733 -7.68020 -7.30357 -7.24021 -6.67130 -4.24638 2.83898 3.01311 3.12507 3.17986 3.31383 3.56472 4.00927 4.60171 4.72285 4.73806 4.84655 4.92661 5.01323 5.06229 5.22356 5.37528 5.39890 5.57112 5.62587 5.63924 5.81137 5.83996 5.87673 5.94876 6.00562 6.05243 6.10622 6.14699 6.18748 6.27037 6.36703 6.48862 6.55062 6.56469 6.91541 7.17593 7.28958 7.33946 7.44925 7.58042 7.67647 7.75482 8.00310 8.15417 8.21592 8.39783 8.75332 9.02008 9.09076 10.27573 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.004521 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.901157 B = 6192.075674 C = 7654.779868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.081 3.919 3 C -0.150 4.150 4 O -0.372 6.372 5 C 0.080 3.920 6 H 0.075 0.925 7 C -0.163 4.163 8 C 0.049 3.951 9 N -0.509 5.509 10 C 0.122 3.878 11 C -0.193 4.193 12 C -0.086 4.086 13 C -0.247 4.247 14 C -0.106 4.106 15 C -0.164 4.164 16 C 0.132 3.868 17 C -0.446 4.446 18 H 0.089 0.911 19 C 0.074 3.926 20 N -0.798 5.798 21 Si 0.903 3.097 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.260 1.260 25 C 0.048 3.952 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.017 0.983 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.278 0.722 44 H 0.050 0.950 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 12.208 -6.124 15.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.023 3.977 3 C -0.207 4.207 4 O -0.291 6.291 5 C 0.021 3.979 6 H 0.093 0.907 7 C -0.202 4.202 8 C -0.079 4.079 9 N -0.234 5.234 10 C -0.004 4.004 11 C -0.194 4.194 12 C -0.105 4.105 13 C -0.266 4.266 14 C -0.125 4.125 15 C -0.184 4.184 16 C 0.129 3.871 17 C -0.476 4.476 18 H 0.107 0.893 19 C -0.143 4.143 20 N -0.424 5.424 21 Si 0.728 3.272 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.184 1.184 25 C -0.080 4.080 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.693 11.857 -6.186 14.955 hybrid contribution 0.038 0.360 -0.024 0.363 sum -6.655 12.217 -6.211 15.235 Atomic orbital electron populations 1.22374 0.96209 1.02585 1.02183 1.22117 0.93585 0.93710 0.88312 1.21865 1.01873 0.94707 1.02243 1.87914 1.85974 1.19909 1.35303 1.23368 0.94967 0.80085 0.99451 0.90702 1.23351 0.98026 0.97230 1.01573 1.22695 0.88842 0.95200 1.01149 1.63706 1.18893 1.14057 1.26779 1.20809 0.99911 0.93556 0.86146 1.19434 0.96937 0.92604 1.10473 1.20354 0.95809 0.94126 1.00164 1.20278 0.98967 0.93554 1.13805 1.20664 0.94547 0.97071 1.00230 1.21339 0.96730 0.95434 1.04867 1.17364 0.91372 0.91113 0.87291 1.19711 0.90868 1.02634 1.34371 0.89292 1.25958 1.00618 0.94054 0.93705 1.69838 1.26634 1.16760 1.29133 0.86397 0.80519 0.79026 0.81274 1.19677 1.20369 1.18390 1.22968 0.98481 0.88752 0.97798 0.92154 0.91972 0.92022 0.92255 0.91953 0.91498 0.91921 0.91310 0.91049 0.90875 0.92292 0.96447 0.90534 0.90087 0.89911 0.89780 0.86623 0.91120 0.93147 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 9.38 37.16 0.35 -1.27 16 2 C 0.08 0.84 3.34 -26.73 -0.09 0.75 16 3 C -0.15 -1.32 9.56 37.16 0.36 -0.96 16 4 O -0.37 -5.01 9.81 -35.23 -0.35 -5.36 16 5 C 0.08 1.11 3.47 -24.60 -0.09 1.03 16 6 H 0.08 1.01 7.50 -51.92 -0.39 0.62 16 7 C -0.16 -2.22 5.78 -24.91 -0.14 -2.37 16 8 C 0.05 0.82 6.40 -2.84 -0.02 0.80 16 9 N -0.51 -9.55 4.88 -232.70 -1.14 -10.68 16 10 C 0.12 2.52 3.89 -4.98 -0.02 2.50 16 11 C -0.19 -4.55 5.00 -103.91 -0.52 -5.07 16 12 C -0.09 -1.93 8.81 -39.66 -0.35 -2.28 16 13 C -0.25 -5.63 10.05 -39.28 -0.39 -6.03 16 14 C -0.11 -2.56 10.02 -39.66 -0.40 -2.95 16 15 C -0.16 -4.32 8.68 -38.88 -0.34 -4.65 16 16 C 0.13 3.45 5.56 -106.82 -0.59 2.85 16 17 C -0.45 -11.61 8.18 -37.74 -0.31 -11.92 16 18 H 0.09 2.26 6.85 -52.49 -0.36 1.90 16 19 C 0.07 1.84 5.16 -17.34 -0.09 1.75 16 20 N -0.80 -20.69 10.97 55.55 0.61 -20.08 16 21 Si 0.90 18.89 29.59 -169.99 -5.03 13.86 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 25 C 0.05 0.78 6.42 -2.30 -0.01 0.76 16 26 H 0.06 0.58 6.45 -51.93 -0.34 0.24 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.59 7.44 -51.93 -0.39 0.20 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.82 7.28 -51.93 -0.38 0.44 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.02 6.20 -51.93 -0.32 0.70 16 37 H 0.02 0.34 7.82 -51.93 -0.41 -0.07 16 38 H 0.08 1.65 7.27 -51.93 -0.38 1.28 16 39 H 0.08 1.63 7.64 -52.49 -0.40 1.23 16 40 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.12 3.14 6.21 -52.49 -0.33 2.81 16 43 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 44 H 0.05 0.82 7.81 -51.93 -0.41 0.41 16 45 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -27.33 354.31 -10.67 -38.00 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.45 Total: 5.98 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -2.66 Total: -27.05 kcal Atomic # 7 Polarization: -30.24 SS G_CDS: -0.53 Total: -30.77 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.35 Total: -5.36 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.33 -10.67 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235528968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.907 kcal (2) G-P(sol) polarization free energy of solvation -27.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds