Wall clock time and date at job start Tue Mar 31 2020 06:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47369 * 2 1 4 4 O 1.42902 * 109.46999 * 119.99929 * 2 1 3 5 5 C 1.42898 * 114.00206 * 90.00015 * 4 2 1 6 6 H 1.09008 * 110.87466 * 32.39105 * 5 4 2 7 7 C 1.55135 * 110.99054 * 268.54639 * 5 4 2 8 8 C 1.54321 * 103.01914 * 206.25152 * 7 5 4 9 9 N 1.47439 * 107.23287 * 22.28660 * 8 7 5 10 10 C 1.46899 * 111.00120 * 123.25604 * 9 8 7 11 11 C 1.50697 * 109.47199 * 69.87123 * 10 9 8 12 12 C 1.37630 * 120.13048 * 260.02141 * 11 10 9 13 13 C 1.38621 * 120.25205 * 179.97438 * 12 11 10 14 14 C 1.38663 * 120.49609 * 359.97438 * 13 12 11 15 15 C 1.37592 * 120.24907 * 0.02562 * 14 13 12 16 16 C 1.40703 * 120.12842 * 80.00034 * 11 10 9 17 17 C 1.41405 * 120.23888 * 0.02562 * 16 11 10 18 18 H 1.07994 * 120.00358 * 334.14577 * 17 16 11 19 19 C 1.39945 * 119.99498 * 154.15021 * 17 16 11 20 20 N 1.30820 * 120.00362 * 343.58143 * 19 17 16 21 21 Si 1.86800 * 119.99690 * 163.57841 * 19 17 16 22 22 H 1.48500 * 109.47072 * 90.00336 * 21 19 17 23 23 H 1.48508 * 109.47218 * 210.00312 * 21 19 17 24 24 H 1.48498 * 109.47322 * 330.00159 * 21 19 17 25 25 C 1.47845 * 108.56664 * 0.98463 * 9 8 7 26 26 H 1.09003 * 109.47300 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46873 * 300.00467 * 1 2 3 28 28 H 1.09001 * 109.46979 * 60.00091 * 1 2 3 29 29 H 1.09003 * 109.47184 * 239.99815 * 2 1 3 30 30 H 1.09004 * 109.47284 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46996 * 299.99898 * 3 2 1 32 32 H 1.08996 * 109.47504 * 59.99919 * 3 2 1 33 33 H 1.09001 * 110.70722 * 87.87249 * 7 5 4 34 34 H 1.08998 * 110.70870 * 324.63667 * 7 5 4 35 35 H 1.08994 * 109.88960 * 262.87338 * 8 7 5 36 36 H 1.09000 * 109.88595 * 141.68681 * 8 7 5 37 37 H 1.09000 * 109.47013 * 309.87043 * 10 9 8 38 38 H 1.08999 * 109.47110 * 189.87249 * 10 9 8 39 39 H 1.08001 * 119.87869 * 359.97438 * 12 11 10 40 40 H 1.07996 * 119.74742 * 180.02562 * 13 12 11 41 41 H 1.08000 * 119.86817 * 180.27933 * 14 13 12 42 42 H 1.07999 * 120.12244 * 179.97438 * 15 14 13 43 43 H 0.97001 * 119.99960 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.37460 * 94.73611 * 25 9 8 45 45 H 1.08998 * 110.37490 * 217.07246 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0782 0.9887 6 1 2.5052 -2.3016 -0.0336 7 6 0.9214 -2.8686 1.3723 8 6 1.4755 -4.2510 1.7766 9 7 2.8910 -4.0638 2.1442 10 6 3.1470 -4.5374 3.5110 11 6 3.0482 -6.0407 3.5485 12 6 1.9017 -6.6464 4.0099 13 6 1.8078 -8.0289 4.0450 14 6 2.8650 -8.8171 3.6162 15 6 4.0208 -8.2332 3.1510 16 6 4.1275 -6.8305 3.1115 17 6 5.3104 -6.2193 2.6355 18 1 5.2727 -5.2262 2.2129 19 6 6.5300 -6.9014 2.7119 20 7 6.6489 -7.9431 3.4944 21 14 7.9880 -6.3246 1.6966 22 1 8.7754 -5.3371 2.4777 23 1 8.8476 -7.4877 1.3594 24 1 7.5001 -5.6905 0.4456 25 6 3.2270 -2.6304 2.0085 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 0.2518 -2.9570 0.5168 34 1 0.4138 -2.3959 2.2131 35 1 1.3986 -4.9414 0.9367 36 1 0.9189 -4.6384 2.6299 37 1 2.4092 -4.1078 4.1886 38 1 4.1463 -4.2312 3.8204 39 1 1.0719 -6.0422 4.3459 40 1 0.9042 -8.4956 4.4082 41 1 2.7793 -9.8934 3.6437 42 1 4.8431 -8.8490 2.8179 43 1 7.4942 -8.4161 3.5471 44 1 3.1200 -2.1231 2.9673 45 1 4.2413 -2.5129 1.6272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235528968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:41 Heat of formation + Delta-G solvation = -45.122609 kcal Electronic energy + Delta-G solvation = -23295.587942 eV Core-core repulsion = 20083.619891 eV Total energy + Delta-G solvation = -3211.968051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.62347 -39.43895 -38.08304 -35.44314 -34.04869 -32.84096 -31.32071 -30.69204 -29.12760 -28.07476 -27.20269 -25.75964 -22.81330 -22.36138 -22.16897 -22.05946 -20.93970 -18.96333 -17.93416 -17.35175 -16.94595 -16.31554 -16.08084 -15.78510 -15.60561 -15.33914 -15.15652 -14.51634 -14.33931 -14.19293 -13.82597 -13.66250 -13.34211 -13.26519 -13.15745 -13.03206 -12.89803 -12.74935 -12.67670 -12.56753 -12.38100 -12.14094 -12.00002 -11.96251 -11.59054 -11.55410 -11.25599 -11.05026 -10.95803 -10.47991 -9.22460 -9.18315 -9.04709 -8.54546 -6.20627 1.03094 1.15834 1.40490 1.51472 1.58413 2.25561 2.54138 2.83221 3.30676 3.70528 3.70665 3.95469 4.02258 4.06608 4.17006 4.24959 4.33127 4.34024 4.43887 4.52610 4.55760 4.68212 4.75064 4.77345 4.80552 4.83314 4.88555 4.93979 4.97740 5.00071 5.05740 5.13360 5.21673 5.29797 5.31621 5.36282 5.42614 5.58056 5.82884 6.01739 6.17628 6.22327 6.27190 6.32588 6.39256 6.50994 6.82264 7.09385 7.17223 8.42242 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.004521 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.901157 B = 6192.075674 C = 7654.779868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 C -0.147 4.147 4 O -0.387 6.387 5 C 0.090 3.910 6 H 0.081 0.919 7 C -0.148 4.148 8 C 0.049 3.951 9 N -0.527 5.527 10 C 0.132 3.868 11 C -0.196 4.196 12 C -0.090 4.090 13 C -0.245 4.245 14 C -0.114 4.114 15 C -0.195 4.195 16 C 0.102 3.898 17 C -0.472 4.472 18 H 0.085 0.915 19 C 0.033 3.967 20 N -0.831 5.831 21 Si 0.972 3.028 22 H -0.264 1.264 23 H -0.271 1.271 24 H -0.260 1.260 25 C 0.047 3.953 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.030 0.970 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.284 0.716 44 H 0.048 0.952 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.523 13.699 -7.031 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 C -0.205 4.205 4 O -0.306 6.306 5 C 0.031 3.969 6 H 0.099 0.901 7 C -0.187 4.187 8 C -0.079 4.079 9 N -0.253 5.253 10 C 0.005 3.995 11 C -0.198 4.198 12 C -0.108 4.108 13 C -0.264 4.264 14 C -0.133 4.133 15 C -0.214 4.214 16 C 0.099 3.901 17 C -0.501 4.501 18 H 0.103 0.897 19 C -0.180 4.180 20 N -0.458 5.458 21 Si 0.793 3.207 22 H -0.189 1.189 23 H -0.196 1.196 24 H -0.184 1.184 25 C -0.081 4.081 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.066 0.934 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.997 13.354 -7.093 17.105 hybrid contribution 0.325 -0.090 0.292 0.446 sum -7.672 13.265 -6.801 16.765 Atomic orbital electron populations 1.22344 0.95099 1.02574 1.02980 1.22397 0.94536 0.94242 0.87475 1.21878 1.01531 0.93854 1.03190 1.87898 1.86323 1.19351 1.37043 1.23169 0.94182 0.80725 0.98783 0.90115 1.23246 0.98034 0.94992 1.02419 1.22681 0.87757 0.96931 1.00534 1.63540 1.20527 1.15803 1.25386 1.20611 0.99303 0.91881 0.87661 1.19795 0.96571 0.94158 1.09238 1.20685 0.96198 0.94532 0.99409 1.20664 0.99470 0.93805 1.12481 1.20928 0.94196 0.98395 0.99752 1.21323 0.97366 0.95691 1.07060 1.17706 0.92542 0.91566 0.88255 1.19849 0.91740 1.02889 1.35672 0.89669 1.26721 1.03014 0.94030 0.94281 1.69901 1.27631 1.17940 1.30324 0.85360 0.77126 0.78719 0.79455 1.18899 1.19569 1.18416 1.22948 0.99122 0.87490 0.98534 0.92541 0.92420 0.90009 0.91619 0.92532 0.89237 0.92289 0.89119 0.90874 0.91753 0.92852 0.95170 0.92334 0.87276 0.86937 0.87865 0.88594 0.90602 0.93403 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.38 71.98 0.68 -2.03 16 2 C 0.07 1.31 3.34 30.59 0.10 1.41 16 3 C -0.15 -2.27 9.56 71.98 0.69 -1.59 16 4 O -0.39 -9.74 9.81 -148.98 -1.46 -11.20 16 5 C 0.09 2.37 3.47 31.98 0.11 2.48 16 6 H 0.08 2.03 7.50 -2.38 -0.02 2.01 16 7 C -0.15 -3.73 5.78 31.77 0.18 -3.55 16 8 C 0.05 1.57 6.40 86.65 0.55 2.12 16 9 N -0.53 -19.66 4.88 -890.13 -4.35 -24.01 16 10 C 0.13 5.48 3.89 85.56 0.33 5.81 16 11 C -0.20 -9.30 5.00 -19.41 -0.10 -9.39 16 12 C -0.09 -3.91 8.81 22.22 0.20 -3.72 16 13 C -0.25 -10.80 10.05 22.46 0.23 -10.57 16 14 C -0.11 -5.47 10.02 22.22 0.22 -5.25 16 15 C -0.19 -10.53 8.68 22.73 0.20 -10.34 16 16 C 0.10 5.49 5.56 -21.29 -0.12 5.37 16 17 C -0.47 -25.33 8.18 23.46 0.19 -25.13 16 18 H 0.09 4.48 6.85 -2.91 -0.02 4.46 16 19 C 0.03 1.71 5.16 85.26 0.44 2.15 16 20 N -0.83 -44.46 10.97 21.83 0.24 -44.22 16 21 Si 0.97 39.43 29.59 68.60 2.03 41.46 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 23 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 25 C 0.05 1.50 6.42 86.77 0.56 2.05 16 26 H 0.06 0.92 6.45 -2.39 -0.02 0.91 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.14 7.44 -2.39 -0.02 1.12 16 30 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 1.90 7.28 -2.39 -0.02 1.89 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.05 1.76 6.20 -2.39 -0.01 1.75 16 37 H 0.03 1.15 7.82 -2.39 -0.02 1.13 16 38 H 0.06 2.60 7.27 -2.39 -0.02 2.58 16 39 H 0.11 4.11 7.64 -2.91 -0.02 4.09 16 40 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 42 H 0.10 5.46 6.21 -2.91 -0.02 5.44 16 43 H 0.28 13.84 8.30 -92.71 -0.77 13.08 16 44 H 0.05 1.54 7.81 -2.39 -0.02 1.52 16 45 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -59.53 354.31 1.88 -57.65 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.95 Total: 30.50 kcal Atomic # 6 Polarization: -54.64 SS G_CDS: 4.46 Total: -50.17 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -4.11 Total: -68.23 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.46 Total: -11.20 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -59.53 1.88 -57.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235528968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.526 kcal (2) G-P(sol) polarization free energy of solvation -59.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds