Wall clock time and date at job start Tue Mar 31 2020 06:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46935 * 2 1 4 4 N 1.46501 * 109.47022 * 185.42372 * 3 2 1 5 5 C 1.46510 * 119.99410 * 278.08873 * 4 3 2 6 6 C 1.52995 * 109.46791 * 269.99852 * 5 4 3 7 7 C 1.53003 * 109.46907 * 180.02562 * 6 5 4 8 8 C 1.34774 * 120.00536 * 98.08903 * 4 3 2 9 9 O 1.21548 * 120.00016 * 185.87266 * 8 4 3 10 10 C 1.47847 * 119.99819 * 5.87532 * 8 4 3 11 11 C 1.39593 * 120.14507 * 314.46301 * 10 8 4 12 12 C 1.37937 * 119.85434 * 180.02562 * 11 10 8 13 13 C 1.38380 * 120.14237 * 359.74875 * 12 11 10 14 14 C 1.38339 * 120.29213 * 0.50572 * 13 12 11 15 15 C 1.50707 * 119.92465 * 179.76660 * 14 13 12 16 16 C 1.50701 * 109.46963 * 269.72649 * 15 14 13 17 17 H 1.07999 * 120.00236 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99794 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00018 * 179.71887 * 18 16 15 20 20 Si 1.86805 * 119.99964 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46990 * 269.72495 * 20 18 16 22 22 H 1.48500 * 109.47166 * 29.72602 * 20 18 16 23 23 H 1.48500 * 109.47340 * 149.72437 * 20 18 16 24 24 C 1.37976 * 120.14665 * 359.49442 * 14 13 12 25 25 H 1.08997 * 109.47427 * 60.00174 * 1 2 3 26 26 H 1.09003 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46969 * 299.99490 * 1 2 3 28 28 H 1.08999 * 109.46786 * 239.99988 * 2 1 3 29 29 H 1.08997 * 109.47427 * 119.99826 * 2 1 3 30 30 H 1.08997 * 109.47100 * 65.42039 * 3 2 1 31 31 H 1.09006 * 109.47315 * 305.41679 * 3 2 1 32 32 H 1.08997 * 109.46959 * 29.99999 * 5 4 3 33 33 H 1.08997 * 109.46863 * 150.00358 * 5 4 3 34 34 H 1.08993 * 109.47942 * 300.00015 * 6 5 4 35 35 H 1.09005 * 109.47598 * 60.00398 * 6 5 4 36 36 H 1.09002 * 109.47070 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.47177 * 300.00112 * 7 6 5 38 38 H 1.08997 * 109.47199 * 59.99787 * 7 6 5 39 39 H 1.08000 * 120.07515 * 0.02562 * 11 10 8 40 40 H 1.07998 * 119.92708 * 180.02562 * 12 11 10 41 41 H 1.08003 * 119.85174 * 180.27764 * 13 12 11 42 42 H 1.08997 * 109.46718 * 149.72573 * 15 14 13 43 43 H 1.08997 * 109.47241 * 29.72713 * 15 14 13 44 44 H 0.96997 * 119.99935 * 180.27095 * 19 18 16 45 45 H 1.07993 * 120.07545 * 180.23372 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4992 1.4446 -0.1306 5 6 4.3404 1.2276 1.0492 6 6 4.6532 2.5731 1.7068 7 6 5.5323 2.3466 2.9385 8 6 4.0677 1.6461 -1.3358 9 8 5.2719 1.5422 -1.4647 10 6 3.2267 1.9936 -2.5010 11 6 2.0465 1.2904 -2.7484 12 6 1.2667 1.6193 -3.8376 13 6 1.6494 2.6473 -4.6812 14 6 2.8205 3.3447 -4.4446 15 6 3.2320 4.4594 -5.3717 16 6 4.0905 3.9017 -6.4777 17 1 4.3159 2.8459 -6.5062 18 6 4.5890 4.7396 -7.4526 19 7 5.3427 4.2539 -8.4146 20 14 4.1997 6.5660 -7.4028 21 1 2.9564 6.8281 -8.1715 22 1 4.0097 6.9934 -5.9934 23 1 5.3234 7.3282 -8.0041 24 6 3.6096 3.0258 -3.3587 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7581 1.9275 0.9345 31 1 1.5996 1.9836 -0.8375 32 1 3.8133 0.5901 1.7589 33 1 5.2704 0.7452 0.7485 34 1 5.1803 3.2107 0.9971 35 1 3.7232 3.0556 2.0076 36 1 5.7548 3.3051 3.4073 37 1 5.0056 1.7089 3.6484 38 1 6.4622 1.8643 2.6374 39 1 1.7446 0.4905 -2.0885 40 1 0.3532 1.0762 -4.0299 41 1 1.0329 2.9038 -5.5301 42 1 3.7976 5.2057 -4.8139 43 1 2.3432 4.9225 -5.8001 44 1 5.6966 4.8440 -9.0982 45 1 4.5216 3.5735 -3.1730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:26 Heat of formation + Delta-G solvation = -24.494233 kcal Electronic energy + Delta-G solvation = -23044.518478 eV Core-core repulsion = 19833.444941 eV Total energy + Delta-G solvation = -3211.073537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.39664 -38.21314 -36.59263 -34.66034 -33.38688 -32.36293 -31.51183 -30.64384 -27.82302 -26.91342 -26.05045 -23.21508 -22.97275 -22.15484 -21.45023 -20.72345 -18.93322 -17.01877 -16.83827 -16.73470 -16.02200 -15.24961 -14.92235 -14.81979 -14.42018 -14.33623 -14.10836 -13.56932 -13.48446 -13.05427 -12.90390 -12.47744 -12.41303 -12.26584 -12.19349 -12.09514 -11.86351 -11.70381 -11.58453 -11.44124 -11.13326 -10.99371 -10.96611 -10.80327 -10.54599 -10.08824 -9.98756 -9.63325 -9.38163 -8.73345 -8.58971 -8.45269 -7.98137 -6.07378 -4.07160 1.43905 1.89546 2.88458 3.04389 3.27856 3.36166 3.38433 4.25669 4.40821 4.50775 4.64451 4.71806 4.86145 4.88882 5.02673 5.12367 5.18879 5.19552 5.23450 5.32514 5.34648 5.46187 5.50844 5.55475 5.65006 5.71401 5.75982 5.80772 5.83806 5.88733 5.96241 5.99332 6.07406 6.10136 6.26590 6.48182 6.54826 6.75585 6.82127 6.90721 6.96275 7.36031 7.42624 7.48402 7.67781 8.28615 8.48367 8.98128 9.52049 11.05595 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017261 B = 0.004050 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.743812 B = 6911.457592 C = 7928.419552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C 0.097 3.903 4 N -0.613 5.613 5 C 0.115 3.885 6 C -0.141 4.141 7 C -0.148 4.148 8 C 0.565 3.435 9 O -0.530 6.530 10 C -0.136 4.136 11 C -0.130 4.130 12 C -0.128 4.128 13 C -0.099 4.099 14 C -0.033 4.033 15 C 0.014 3.986 16 C -0.515 4.515 17 H 0.074 0.926 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.265 1.265 23 H -0.286 1.286 24 C -0.068 4.068 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.029 0.971 43 H 0.026 0.974 44 H 0.265 0.735 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.319 -6.119 21.536 24.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.186 4.186 3 C -0.026 4.026 4 N -0.346 5.346 5 C -0.007 4.007 6 C -0.179 4.179 7 C -0.206 4.206 8 C 0.354 3.646 9 O -0.407 6.407 10 C -0.139 4.139 11 C -0.148 4.148 12 C -0.146 4.146 13 C -0.118 4.118 14 C -0.033 4.033 15 C -0.023 4.023 16 C -0.553 4.553 17 H 0.093 0.907 18 C -0.132 4.132 19 N -0.536 5.536 20 Si 0.705 3.295 21 H -0.201 1.201 22 H -0.189 1.189 23 H -0.212 1.212 24 C -0.086 4.086 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.148 0.852 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.545 -6.125 21.308 24.138 hybrid contribution -0.133 0.863 -0.166 0.889 sum -9.677 -5.262 21.142 23.839 Atomic orbital electron populations 1.21727 0.94802 1.02086 1.02341 1.22089 0.96517 0.97330 1.02665 1.21944 0.79704 0.97115 1.03825 1.47886 1.06778 1.72360 1.07549 1.21477 0.95979 0.97001 0.86278 1.21892 1.00214 0.98079 0.97739 1.21683 0.99887 1.01738 0.97275 1.18622 0.87521 0.75794 0.82627 1.90776 1.14886 1.50452 1.84548 1.19695 0.96587 1.00478 0.97147 1.21515 0.94010 1.00447 0.98860 1.20976 0.99988 0.98279 0.95362 1.21284 0.96723 0.95239 0.98511 1.20257 0.92441 0.97230 0.93398 1.18833 0.97047 0.92264 0.94129 1.20921 1.30349 0.96914 1.07136 0.90736 1.24995 0.94539 0.98606 0.95030 1.69899 1.34041 1.35707 1.13965 0.86810 0.78191 0.85715 0.78827 1.20140 1.18923 1.21186 1.21061 0.98709 0.95844 0.93019 0.92022 0.92378 0.92531 0.90964 0.91644 0.90842 0.88374 0.90813 0.89749 0.91418 0.91982 0.92518 0.92791 0.92418 0.85157 0.86275 0.85867 0.95277 0.95598 0.92554 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.15 -1.19 5.32 -26.73 -0.14 -1.33 16 3 C 0.10 0.93 4.88 -4.04 -0.02 0.91 16 4 N -0.61 -7.66 2.48 -174.80 -0.43 -8.10 16 5 C 0.12 1.23 5.46 -4.04 -0.02 1.21 16 6 C -0.14 -1.41 6.26 -26.73 -0.17 -1.57 16 7 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 8 C 0.56 9.56 7.27 -12.33 -0.09 9.47 16 9 O -0.53 -10.96 16.54 5.32 0.09 -10.88 16 10 C -0.14 -2.36 5.09 -104.97 -0.53 -2.90 16 11 C -0.13 -1.90 7.41 -39.19 -0.29 -2.19 16 12 C -0.13 -1.89 10.03 -39.64 -0.40 -2.29 16 13 C -0.10 -1.77 9.69 -39.49 -0.38 -2.16 16 14 C -0.03 -0.69 5.06 -104.68 -0.53 -1.22 16 15 C 0.01 0.34 4.17 -29.03 -0.12 0.22 16 16 C -0.52 -14.75 9.65 -34.44 -0.33 -15.09 16 17 H 0.07 2.36 7.98 -52.49 -0.42 1.94 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 20 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C -0.07 -1.36 9.34 -39.19 -0.37 -1.72 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.68 6.19 -51.93 -0.32 0.36 16 29 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 30 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.10 1.04 5.04 -51.93 -0.26 0.78 16 32 H 0.07 0.60 7.99 -51.93 -0.42 0.18 16 33 H 0.08 1.05 7.35 -51.93 -0.38 0.67 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.13 1.54 3.67 -52.49 -0.19 1.34 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 42 H 0.03 0.69 7.14 -51.93 -0.37 0.32 16 43 H 0.03 0.59 7.51 -51.93 -0.39 0.20 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 45 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -33.01 362.77 -8.94 -41.95 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.41 Total: -0.01 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -2.76 Total: -18.16 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.34 Total: -35.10 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.01 -8.94 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.460 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds