Wall clock time and date at job start Tue Mar 31 2020 06:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46935 * 2 1 4 4 N 1.46501 * 109.47022 * 185.42372 * 3 2 1 5 5 C 1.46510 * 119.99410 * 278.08873 * 4 3 2 6 6 C 1.52995 * 109.46791 * 269.99852 * 5 4 3 7 7 C 1.53003 * 109.46907 * 180.02562 * 6 5 4 8 8 C 1.34774 * 120.00536 * 98.08903 * 4 3 2 9 9 O 1.21548 * 120.00016 * 185.87266 * 8 4 3 10 10 C 1.47847 * 119.99819 * 5.87532 * 8 4 3 11 11 C 1.39593 * 120.14507 * 314.46301 * 10 8 4 12 12 C 1.37937 * 119.85434 * 180.02562 * 11 10 8 13 13 C 1.38380 * 120.14237 * 359.74875 * 12 11 10 14 14 C 1.38339 * 120.29213 * 0.50572 * 13 12 11 15 15 C 1.50707 * 119.92465 * 179.76660 * 14 13 12 16 16 C 1.50701 * 109.46963 * 269.72649 * 15 14 13 17 17 H 1.07999 * 120.00236 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99794 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00018 * 179.71887 * 18 16 15 20 20 Si 1.86805 * 119.99964 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46990 * 269.72495 * 20 18 16 22 22 H 1.48500 * 109.47166 * 29.72602 * 20 18 16 23 23 H 1.48500 * 109.47340 * 149.72437 * 20 18 16 24 24 C 1.37976 * 120.14665 * 359.49442 * 14 13 12 25 25 H 1.08997 * 109.47427 * 60.00174 * 1 2 3 26 26 H 1.09003 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46969 * 299.99490 * 1 2 3 28 28 H 1.08999 * 109.46786 * 239.99988 * 2 1 3 29 29 H 1.08997 * 109.47427 * 119.99826 * 2 1 3 30 30 H 1.08997 * 109.47100 * 65.42039 * 3 2 1 31 31 H 1.09006 * 109.47315 * 305.41679 * 3 2 1 32 32 H 1.08997 * 109.46959 * 29.99999 * 5 4 3 33 33 H 1.08997 * 109.46863 * 150.00358 * 5 4 3 34 34 H 1.08993 * 109.47942 * 300.00015 * 6 5 4 35 35 H 1.09005 * 109.47598 * 60.00398 * 6 5 4 36 36 H 1.09002 * 109.47070 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.47177 * 300.00112 * 7 6 5 38 38 H 1.08997 * 109.47199 * 59.99787 * 7 6 5 39 39 H 1.08000 * 120.07515 * 0.02562 * 11 10 8 40 40 H 1.07998 * 119.92708 * 180.02562 * 12 11 10 41 41 H 1.08003 * 119.85174 * 180.27764 * 13 12 11 42 42 H 1.08997 * 109.46718 * 149.72573 * 15 14 13 43 43 H 1.08997 * 109.47241 * 29.72713 * 15 14 13 44 44 H 0.96997 * 119.99935 * 180.27095 * 19 18 16 45 45 H 1.07993 * 120.07545 * 180.23372 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4992 1.4446 -0.1306 5 6 4.3404 1.2276 1.0492 6 6 4.6532 2.5731 1.7068 7 6 5.5323 2.3466 2.9385 8 6 4.0677 1.6461 -1.3358 9 8 5.2719 1.5422 -1.4647 10 6 3.2267 1.9936 -2.5010 11 6 2.0465 1.2904 -2.7484 12 6 1.2667 1.6193 -3.8376 13 6 1.6494 2.6473 -4.6812 14 6 2.8205 3.3447 -4.4446 15 6 3.2320 4.4594 -5.3717 16 6 4.0905 3.9017 -6.4777 17 1 4.3159 2.8459 -6.5062 18 6 4.5890 4.7396 -7.4526 19 7 5.3427 4.2539 -8.4146 20 14 4.1997 6.5660 -7.4028 21 1 2.9564 6.8281 -8.1715 22 1 4.0097 6.9934 -5.9934 23 1 5.3234 7.3282 -8.0041 24 6 3.6096 3.0258 -3.3587 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7581 1.9275 0.9345 31 1 1.5996 1.9836 -0.8375 32 1 3.8133 0.5901 1.7589 33 1 5.2704 0.7452 0.7485 34 1 5.1803 3.2107 0.9971 35 1 3.7232 3.0556 2.0076 36 1 5.7548 3.3051 3.4073 37 1 5.0056 1.7089 3.6484 38 1 6.4622 1.8643 2.6374 39 1 1.7446 0.4905 -2.0885 40 1 0.3532 1.0762 -4.0299 41 1 1.0329 2.9038 -5.5301 42 1 3.7976 5.2057 -4.8139 43 1 2.3432 4.9225 -5.8001 44 1 5.6966 4.8440 -9.0982 45 1 4.5216 3.5735 -3.1730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:26 Heat of formation + Delta-G solvation = -43.281239 kcal Electronic energy + Delta-G solvation = -23045.333144 eV Core-core repulsion = 19833.444941 eV Total energy + Delta-G solvation = -3211.888203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62801 -39.57454 -37.70369 -35.71749 -35.08765 -33.39679 -33.15347 -31.95824 -29.56550 -27.77363 -26.99232 -24.98209 -24.24271 -22.86186 -22.50027 -22.12671 -20.08735 -19.00994 -18.22659 -17.94652 -17.19405 -16.53548 -16.37447 -15.80598 -15.77805 -15.57328 -15.28090 -14.84297 -14.60559 -14.32242 -14.12292 -14.06011 -13.62079 -13.49910 -13.12186 -13.06706 -13.00786 -12.85890 -12.57661 -12.49966 -12.33545 -12.24916 -12.05924 -12.01174 -11.77851 -11.65264 -11.58938 -11.41741 -10.96030 -10.80683 -9.91808 -9.68555 -9.47334 -8.32477 -6.38579 0.05451 0.50373 1.33861 1.37300 1.48801 1.61026 1.94633 2.33272 2.84909 3.01583 3.43420 3.90081 3.97319 3.98976 4.03022 4.04717 4.17951 4.24082 4.33448 4.43616 4.49991 4.53412 4.55614 4.60339 4.71123 4.77062 4.84727 4.86797 4.97090 5.02255 5.10506 5.13252 5.16530 5.19213 5.21366 5.26571 5.34023 5.37735 5.45757 5.53050 5.56717 5.61322 5.86246 6.02274 6.23354 6.26459 6.67706 7.03833 7.24922 8.84504 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017261 B = 0.004050 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.743812 B = 6911.457592 C = 7928.419552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.090 3.910 4 N -0.599 5.599 5 C 0.111 3.889 6 C -0.136 4.136 7 C -0.144 4.144 8 C 0.558 3.442 9 O -0.584 6.584 10 C -0.143 4.143 11 C -0.109 4.109 12 C -0.112 4.112 13 C -0.106 4.106 14 C -0.065 4.065 15 C 0.021 3.979 16 C -0.525 4.525 17 H 0.024 0.976 18 C 0.007 3.993 19 N -0.949 5.949 20 Si 0.954 3.046 21 H -0.257 1.257 22 H -0.248 1.248 23 H -0.284 1.284 24 C -0.093 4.093 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.134 0.866 42 H 0.024 0.976 43 H 0.042 0.958 44 H 0.268 0.732 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 -6.419 24.158 28.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C -0.032 4.032 4 N -0.330 5.330 5 C -0.010 4.010 6 C -0.175 4.175 7 C -0.202 4.202 8 C 0.348 3.652 9 O -0.464 6.464 10 C -0.146 4.146 11 C -0.127 4.127 12 C -0.130 4.130 13 C -0.124 4.124 14 C -0.065 4.065 15 C -0.017 4.017 16 C -0.562 4.562 17 H 0.042 0.958 18 C -0.190 4.190 19 N -0.590 5.590 20 Si 0.776 3.224 21 H -0.181 1.181 22 H -0.172 1.172 23 H -0.209 1.209 24 C -0.112 4.112 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.183 0.817 40 H 0.184 0.816 41 H 0.152 0.848 42 H 0.042 0.958 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.124 -6.438 23.982 28.086 hybrid contribution 0.940 0.800 -0.877 1.515 sum -12.184 -5.637 23.105 26.722 Atomic orbital electron populations 1.21724 0.93194 1.02818 1.02992 1.22043 0.97753 0.95669 1.02628 1.22244 0.77339 0.98687 1.04923 1.47976 1.08474 1.70048 1.06487 1.21683 0.95430 0.97892 0.86035 1.21848 1.00882 0.97078 0.97691 1.21659 0.99341 1.02473 0.96684 1.18686 0.86790 0.75812 0.83940 1.90745 1.16943 1.53240 1.85520 1.19830 0.97746 0.99962 0.97044 1.21936 0.92185 0.99766 0.98811 1.21435 1.01079 0.96705 0.93734 1.21489 0.95699 0.95739 0.99450 1.20081 0.94572 0.98083 0.93787 1.18670 0.96507 0.93333 0.93153 1.21164 1.31252 0.94848 1.08985 0.95794 1.26036 0.94147 1.04544 0.94322 1.70067 1.35742 1.37973 1.15181 0.85610 0.78594 0.78315 0.79882 1.18109 1.17182 1.20938 1.20915 0.98253 0.97575 0.94469 0.92020 0.91628 0.91338 0.92341 0.90381 0.88066 0.89262 0.86938 0.92056 0.94988 0.90429 0.92002 0.90482 0.93313 0.81725 0.81569 0.84849 0.95760 0.93997 0.92282 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 71.98 0.71 -0.55 16 2 C -0.14 -1.71 5.32 30.59 0.16 -1.55 16 3 C 0.09 1.41 4.88 86.38 0.42 1.83 16 4 N -0.60 -14.25 2.48 -825.22 -2.05 -16.29 16 5 C 0.11 2.22 5.46 86.38 0.47 2.69 16 6 C -0.14 -2.60 6.26 30.59 0.19 -2.41 16 7 C -0.14 -2.09 9.91 71.98 0.71 -1.38 16 8 C 0.56 19.38 7.27 86.79 0.63 20.01 16 9 O -0.58 -25.74 16.54 -3.87 -0.06 -25.80 16 10 C -0.14 -5.03 5.09 -20.09 -0.10 -5.13 16 11 C -0.11 -2.94 7.41 22.53 0.17 -2.77 16 12 C -0.11 -2.96 10.03 22.23 0.22 -2.74 16 13 C -0.11 -3.66 9.69 22.33 0.22 -3.45 16 14 C -0.07 -2.79 5.06 -19.90 -0.10 -2.89 16 15 C 0.02 1.00 4.17 29.10 0.12 1.13 16 16 C -0.52 -31.59 9.65 25.60 0.25 -31.34 16 17 H 0.02 1.62 7.98 -2.91 -0.02 1.60 16 18 C 0.01 0.39 5.47 84.66 0.46 0.85 16 19 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 20 Si 0.95 44.76 27.47 68.60 1.88 46.65 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 22 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 24 C -0.09 -3.96 9.34 22.53 0.21 -3.75 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.88 6.19 -2.39 -0.01 0.87 16 29 H 0.08 0.79 8.06 -2.39 -0.02 0.77 16 30 H 0.10 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.09 1.61 5.04 -2.38 -0.01 1.59 16 32 H 0.11 1.40 7.99 -2.39 -0.02 1.38 16 33 H 0.06 1.54 7.35 -2.39 -0.02 1.52 16 34 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.17 3.29 3.67 -2.91 -0.01 3.27 16 40 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 42 H 0.02 1.19 7.14 -2.39 -0.02 1.17 16 43 H 0.04 1.89 7.51 -2.39 -0.02 1.87 16 44 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 45 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -78.90 362.77 5.72 -73.18 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.90 Total: 14.64 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 4.75 Total: -31.43 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -1.75 Total: -77.24 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.06 Total: -25.80 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.65 kcal Total: -78.90 5.72 -73.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.898 kcal (2) G-P(sol) polarization free energy of solvation -78.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds