Wall clock time and date at job start Tue Mar 31 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47225 * 2 1 4 4 N 1.46501 * 109.47181 * 186.08986 * 3 2 1 5 5 C 1.46507 * 119.99483 * 286.34602 * 4 3 2 6 6 C 1.53000 * 109.47240 * 269.72751 * 5 4 3 7 7 C 1.53000 * 109.47147 * 180.02562 * 6 5 4 8 8 C 1.34769 * 120.00213 * 106.07819 * 4 3 2 9 9 O 1.21555 * 119.99957 * 175.93618 * 8 4 3 10 10 C 1.47847 * 120.00475 * 355.92546 * 8 4 3 11 11 C 1.39573 * 120.14160 * 320.28407 * 10 8 4 12 12 C 1.37961 * 119.85435 * 179.74342 * 11 10 8 13 13 C 1.38366 * 120.13899 * 0.52571 * 12 11 10 14 14 C 1.50701 * 119.85151 * 179.72066 * 13 12 11 15 15 C 1.50696 * 109.47234 * 270.02406 * 14 13 12 16 16 H 1.07998 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99945 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00044 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46970 * 90.00186 * 19 17 15 21 21 H 1.48499 * 109.47033 * 210.00124 * 19 17 15 22 22 H 1.48497 * 109.46880 * 330.00227 * 19 17 15 23 23 C 1.38353 * 120.29468 * 359.74934 * 13 12 11 24 24 C 1.37967 * 120.14401 * 359.97210 * 23 13 12 25 25 H 1.08998 * 109.47385 * 300.00393 * 1 2 3 26 26 H 1.09011 * 109.46931 * 60.00177 * 1 2 3 27 27 H 1.08997 * 109.47251 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47615 * 239.99953 * 2 1 3 29 29 H 1.08994 * 109.47039 * 119.99592 * 2 1 3 30 30 H 1.08996 * 109.47124 * 66.08133 * 3 2 1 31 31 H 1.09003 * 109.47082 * 306.08208 * 3 2 1 32 32 H 1.08993 * 109.47107 * 29.72664 * 5 4 3 33 33 H 1.08998 * 109.46553 * 149.72397 * 5 4 3 34 34 H 1.09006 * 109.47198 * 300.00170 * 6 5 4 35 35 H 1.09001 * 109.47239 * 60.00001 * 6 5 4 36 36 H 1.08995 * 109.47042 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47066 * 300.00286 * 7 6 5 38 38 H 1.09001 * 109.47216 * 59.99784 * 7 6 5 39 39 H 1.08003 * 120.07581 * 359.97438 * 11 10 8 40 40 H 1.07996 * 119.93239 * 180.27389 * 12 11 10 41 41 H 1.09002 * 109.47119 * 30.02206 * 14 13 12 42 42 H 1.08994 * 109.47178 * 150.02394 * 14 13 12 43 43 H 0.97005 * 119.99866 * 179.97438 * 18 17 15 44 44 H 1.08001 * 119.92974 * 180.02562 * 23 13 12 45 45 H 1.07999 * 120.06702 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4977 1.4451 -0.1465 5 6 4.3476 1.0465 0.9783 6 6 4.6921 2.2777 1.8186 7 6 5.5802 1.8615 2.9929 8 6 4.0566 1.8090 -1.3176 9 8 5.2658 1.8824 -1.4171 10 6 3.1990 2.1186 -2.4815 11 6 2.0641 1.3486 -2.7405 12 6 1.2652 1.6461 -3.8252 13 6 1.5930 2.6984 -4.6616 14 6 0.7191 3.0137 -5.8482 15 6 1.2012 2.2386 -7.0472 16 1 2.0548 1.5828 -6.9588 17 6 0.5520 2.3657 -8.2569 18 7 -0.4883 3.1630 -8.3642 19 14 1.1492 1.4043 -9.7431 20 1 0.4588 0.0905 -9.7927 21 1 0.8487 2.1685 -10.9803 22 1 2.6148 1.1897 -9.6374 23 6 2.7197 3.4621 -4.4138 24 6 3.5240 3.1787 -3.3292 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.7683 1.9239 0.9394 31 1 1.5905 1.9868 -0.8306 32 1 3.8167 0.3220 1.5958 33 1 5.2652 0.5971 0.5988 34 1 5.2230 3.0022 1.2010 35 1 3.7743 2.7270 2.1981 36 1 5.8260 2.7387 3.5913 37 1 5.0497 1.1368 3.6106 38 1 6.4979 1.4124 2.6131 39 1 1.8098 0.5239 -2.0910 40 1 0.3843 1.0538 -4.0242 41 1 -0.3108 2.7347 -5.6254 42 1 0.7681 4.0813 -6.0621 43 1 -0.9448 3.2527 -9.2154 44 1 2.9698 4.2824 -5.0703 45 1 4.4030 3.7759 -3.1367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:30 Heat of formation + Delta-G solvation = -30.450519 kcal Electronic energy + Delta-G solvation = -22895.764885 eV Core-core repulsion = 19684.433064 eV Total energy + Delta-G solvation = -3211.331821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.38285 -38.15814 -36.61048 -34.60736 -33.43431 -32.35045 -31.34698 -30.42744 -27.86720 -26.81177 -25.80696 -23.65416 -22.20684 -22.19993 -21.70550 -20.73089 -19.21774 -17.33420 -16.67725 -16.36270 -15.60925 -15.22561 -15.03344 -14.80437 -14.47261 -14.23239 -14.02208 -13.56854 -13.30206 -13.02498 -12.82882 -12.63036 -12.37348 -12.28853 -12.19577 -12.05387 -11.68105 -11.52876 -11.39039 -11.36948 -11.33226 -10.97299 -10.81502 -10.74504 -10.63490 -10.26790 -9.88418 -9.52327 -9.46534 -8.74052 -8.48465 -8.41381 -7.94613 -6.10397 -4.14656 1.49800 1.91944 2.92551 3.07467 3.27768 3.34354 3.39273 4.28440 4.45784 4.53397 4.67358 4.73951 4.85371 4.90523 5.04838 5.14059 5.20706 5.24332 5.26853 5.34399 5.42694 5.48174 5.52943 5.57188 5.65960 5.79145 5.82177 5.84094 5.89779 5.93546 5.99686 6.06594 6.06925 6.14538 6.41186 6.50545 6.55655 6.81094 6.99290 7.04621 7.38181 7.40831 7.55255 7.72311 7.85334 8.23156 8.27576 8.90581 9.49852 10.99486 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023976 B = 0.003430 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.557269 B = 8160.538622 C = 8758.812024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.147 4.147 3 C 0.096 3.904 4 N -0.612 5.612 5 C 0.117 3.883 6 C -0.140 4.140 7 C -0.148 4.148 8 C 0.568 3.432 9 O -0.542 6.542 10 C -0.170 4.170 11 C -0.102 4.102 12 C -0.133 4.133 13 C -0.006 4.006 14 C 0.044 3.956 15 C -0.514 4.514 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.132 4.132 24 C -0.066 4.066 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.263 0.737 44 H 0.125 0.875 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -3.880 21.006 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.185 4.185 3 C -0.027 4.027 4 N -0.344 5.344 5 C -0.006 4.006 6 C -0.178 4.178 7 C -0.206 4.206 8 C 0.358 3.642 9 O -0.419 6.419 10 C -0.173 4.173 11 C -0.120 4.120 12 C -0.151 4.151 13 C -0.006 4.006 14 C 0.007 3.993 15 C -0.552 4.552 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.723 3.277 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.150 4.150 24 C -0.084 4.084 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.143 0.857 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.229 -3.773 20.834 21.591 hybrid contribution 0.194 -0.554 -0.879 1.057 sum 4.424 -4.327 19.955 20.893 Atomic orbital electron populations 1.21733 0.94654 1.02202 1.02491 1.22063 0.96723 0.97144 1.02559 1.21989 0.79591 0.97350 1.03759 1.47883 1.06902 1.67624 1.12033 1.21460 0.95453 0.96427 0.87248 1.21874 1.00082 0.98738 0.97133 1.21685 0.99808 1.01363 0.97740 1.18618 0.87602 0.75587 0.82384 1.90733 1.14701 1.52456 1.84049 1.19520 0.98249 1.01415 0.98116 1.21645 0.93357 0.99012 0.97947 1.21053 1.00669 0.98522 0.94856 1.20951 0.94111 0.91225 0.94307 1.18444 0.93858 0.97931 0.89085 1.21021 1.14542 1.26125 0.93501 0.92371 1.25000 0.94904 0.95401 0.98914 1.69951 1.20217 1.37327 1.25696 0.86522 0.79315 0.79876 0.81950 1.20541 1.21105 1.19720 1.21084 0.95406 1.01325 0.97201 1.21055 0.98174 0.95694 0.93515 0.92553 0.91805 0.92322 0.90948 0.91716 0.91071 0.88101 0.90769 0.90065 0.91408 0.92016 0.92570 0.92764 0.92498 0.85261 0.85802 0.95024 0.95025 0.92754 0.85699 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.15 -1.27 5.20 -26.73 -0.14 -1.41 16 3 C 0.10 0.96 4.88 -4.04 -0.02 0.94 16 4 N -0.61 -7.52 2.52 -174.80 -0.44 -7.96 16 5 C 0.12 1.21 5.31 -4.04 -0.02 1.18 16 6 C -0.14 -1.33 6.26 -26.73 -0.17 -1.50 16 7 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 8 C 0.57 9.15 7.32 -12.33 -0.09 9.06 16 9 O -0.54 -10.36 16.54 5.32 0.09 -10.27 16 10 C -0.17 -2.85 5.10 -104.97 -0.53 -3.39 16 11 C -0.10 -1.60 7.41 -39.19 -0.29 -1.89 16 12 C -0.13 -2.41 9.68 -39.64 -0.38 -2.79 16 13 C -0.01 -0.12 5.08 -104.53 -0.53 -0.65 16 14 C 0.04 1.08 5.10 -29.04 -0.15 0.93 16 15 C -0.51 -14.06 9.09 -34.44 -0.31 -14.37 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 19 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.13 -2.53 9.68 -39.64 -0.38 -2.91 16 24 C -0.07 -1.16 9.64 -39.19 -0.38 -1.53 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.72 6.22 -51.93 -0.32 0.40 16 29 H 0.06 0.49 7.50 -51.93 -0.39 0.10 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 1.15 4.97 -51.93 -0.26 0.89 16 32 H 0.07 0.59 7.34 -51.93 -0.38 0.21 16 33 H 0.08 0.96 7.48 -51.93 -0.39 0.57 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.13 1.69 3.73 -52.48 -0.20 1.50 16 40 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 42 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 45 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -30.76 365.14 -9.29 -40.05 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.39 Total: -0.17 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -2.76 Total: -18.35 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.30 Total: -33.04 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.76 -9.29 -40.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.598 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds