Wall clock time and date at job start Tue Mar 31 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47225 * 2 1 4 4 N 1.46501 * 109.47181 * 186.08986 * 3 2 1 5 5 C 1.46507 * 119.99483 * 286.34602 * 4 3 2 6 6 C 1.53000 * 109.47240 * 269.72751 * 5 4 3 7 7 C 1.53000 * 109.47147 * 180.02562 * 6 5 4 8 8 C 1.34769 * 120.00213 * 106.07819 * 4 3 2 9 9 O 1.21555 * 119.99957 * 175.93618 * 8 4 3 10 10 C 1.47847 * 120.00475 * 355.92546 * 8 4 3 11 11 C 1.39573 * 120.14160 * 320.28407 * 10 8 4 12 12 C 1.37961 * 119.85435 * 179.74342 * 11 10 8 13 13 C 1.38366 * 120.13899 * 0.52571 * 12 11 10 14 14 C 1.50701 * 119.85151 * 179.72066 * 13 12 11 15 15 C 1.50696 * 109.47234 * 270.02406 * 14 13 12 16 16 H 1.07998 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99945 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00044 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46970 * 90.00186 * 19 17 15 21 21 H 1.48499 * 109.47033 * 210.00124 * 19 17 15 22 22 H 1.48497 * 109.46880 * 330.00227 * 19 17 15 23 23 C 1.38353 * 120.29468 * 359.74934 * 13 12 11 24 24 C 1.37967 * 120.14401 * 359.97210 * 23 13 12 25 25 H 1.08998 * 109.47385 * 300.00393 * 1 2 3 26 26 H 1.09011 * 109.46931 * 60.00177 * 1 2 3 27 27 H 1.08997 * 109.47251 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47615 * 239.99953 * 2 1 3 29 29 H 1.08994 * 109.47039 * 119.99592 * 2 1 3 30 30 H 1.08996 * 109.47124 * 66.08133 * 3 2 1 31 31 H 1.09003 * 109.47082 * 306.08208 * 3 2 1 32 32 H 1.08993 * 109.47107 * 29.72664 * 5 4 3 33 33 H 1.08998 * 109.46553 * 149.72397 * 5 4 3 34 34 H 1.09006 * 109.47198 * 300.00170 * 6 5 4 35 35 H 1.09001 * 109.47239 * 60.00001 * 6 5 4 36 36 H 1.08995 * 109.47042 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47066 * 300.00286 * 7 6 5 38 38 H 1.09001 * 109.47216 * 59.99784 * 7 6 5 39 39 H 1.08003 * 120.07581 * 359.97438 * 11 10 8 40 40 H 1.07996 * 119.93239 * 180.27389 * 12 11 10 41 41 H 1.09002 * 109.47119 * 30.02206 * 14 13 12 42 42 H 1.08994 * 109.47178 * 150.02394 * 14 13 12 43 43 H 0.97005 * 119.99866 * 179.97438 * 18 17 15 44 44 H 1.08001 * 119.92974 * 180.02562 * 23 13 12 45 45 H 1.07999 * 120.06702 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4977 1.4451 -0.1465 5 6 4.3476 1.0465 0.9783 6 6 4.6921 2.2777 1.8186 7 6 5.5802 1.8615 2.9929 8 6 4.0566 1.8090 -1.3176 9 8 5.2658 1.8824 -1.4171 10 6 3.1990 2.1186 -2.4815 11 6 2.0641 1.3486 -2.7405 12 6 1.2652 1.6461 -3.8252 13 6 1.5930 2.6984 -4.6616 14 6 0.7191 3.0137 -5.8482 15 6 1.2012 2.2386 -7.0472 16 1 2.0548 1.5828 -6.9588 17 6 0.5520 2.3657 -8.2569 18 7 -0.4883 3.1630 -8.3642 19 14 1.1492 1.4043 -9.7431 20 1 0.4588 0.0905 -9.7927 21 1 0.8487 2.1685 -10.9803 22 1 2.6148 1.1897 -9.6374 23 6 2.7197 3.4621 -4.4138 24 6 3.5240 3.1787 -3.3292 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.7683 1.9239 0.9394 31 1 1.5905 1.9868 -0.8306 32 1 3.8167 0.3220 1.5958 33 1 5.2652 0.5971 0.5988 34 1 5.2230 3.0022 1.2010 35 1 3.7743 2.7270 2.1981 36 1 5.8260 2.7387 3.5913 37 1 5.0497 1.1368 3.6106 38 1 6.4979 1.4124 2.6131 39 1 1.8098 0.5239 -2.0910 40 1 0.3843 1.0538 -4.0242 41 1 -0.3108 2.7347 -5.6254 42 1 0.7681 4.0813 -6.0621 43 1 -0.9448 3.2527 -9.2154 44 1 2.9698 4.2824 -5.0703 45 1 4.4030 3.7759 -3.1367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:30 Heat of formation + Delta-G solvation = -45.422976 kcal Electronic energy + Delta-G solvation = -22896.414139 eV Core-core repulsion = 19684.433064 eV Total energy + Delta-G solvation = -3211.981076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.59952 -39.56159 -37.68507 -35.69045 -35.08588 -33.36512 -32.88954 -31.84907 -29.48161 -27.70340 -26.91831 -25.34998 -23.57845 -23.04163 -22.78480 -22.04414 -20.34699 -18.54507 -18.46882 -17.76496 -16.94094 -16.42379 -16.36486 -16.00549 -15.70297 -15.41578 -15.24240 -14.57202 -14.53561 -14.27224 -14.16643 -14.11095 -13.60863 -13.30458 -13.21396 -13.02354 -12.96059 -12.87576 -12.61375 -12.59852 -12.44192 -12.26977 -12.09672 -11.90222 -11.67302 -11.62752 -11.56011 -11.42027 -10.89442 -10.61128 -9.85277 -9.75943 -9.47673 -8.22211 -6.34629 0.06026 0.48304 1.39801 1.40546 1.51910 1.70335 1.96174 2.39080 2.89148 3.09704 3.45555 3.87326 3.96949 4.00197 4.04358 4.06272 4.18207 4.25906 4.35727 4.42494 4.53171 4.53758 4.57569 4.62321 4.72787 4.79332 4.88320 4.96032 5.00145 5.01257 5.15990 5.19724 5.22411 5.25779 5.31944 5.33593 5.34852 5.38466 5.44434 5.53252 5.62262 5.72882 5.97750 5.98886 6.17115 6.28793 6.77678 7.06830 7.34072 8.87317 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023976 B = 0.003430 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.557269 B = 8160.538622 C = 8758.812024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.141 4.141 3 C 0.090 3.910 4 N -0.601 5.601 5 C 0.113 3.887 6 C -0.135 4.135 7 C -0.144 4.144 8 C 0.564 3.436 9 O -0.578 6.578 10 C -0.167 4.167 11 C -0.081 4.081 12 C -0.134 4.134 13 C -0.032 4.032 14 C 0.053 3.947 15 C -0.530 4.530 16 H 0.053 0.947 17 C 0.009 3.991 18 N -0.927 5.927 19 Si 0.962 3.038 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.139 4.139 24 C -0.068 4.068 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.161 0.839 40 H 0.131 0.869 41 H 0.014 0.986 42 H 0.007 0.993 43 H 0.266 0.734 44 H 0.122 0.878 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 -5.643 23.167 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C -0.031 4.031 4 N -0.331 5.331 5 C -0.009 4.009 6 C -0.174 4.174 7 C -0.202 4.202 8 C 0.354 3.646 9 O -0.459 6.459 10 C -0.170 4.170 11 C -0.099 4.099 12 C -0.152 4.152 13 C -0.032 4.032 14 C 0.016 3.984 15 C -0.568 4.568 16 H 0.071 0.929 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.786 3.214 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.194 1.194 23 C -0.157 4.157 24 C -0.087 4.087 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.178 0.822 40 H 0.149 0.851 41 H 0.032 0.968 42 H 0.026 0.974 43 H 0.075 0.925 44 H 0.140 0.860 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.275 -5.545 23.034 24.075 hybrid contribution 0.166 0.001 -1.402 1.412 sum 4.441 -5.545 21.632 22.769 Atomic orbital electron populations 1.21731 0.93887 1.02731 1.02649 1.22013 0.97261 0.95822 1.02835 1.22199 0.77825 0.98596 1.04522 1.47955 1.08212 1.65683 1.11221 1.21677 0.94993 0.97423 0.86766 1.21823 1.00628 0.97688 0.97234 1.21660 0.99349 1.02065 0.97123 1.18516 0.86924 0.75923 0.83262 1.90719 1.16015 1.54452 1.84756 1.19778 0.98318 1.00719 0.98202 1.21854 0.92040 0.99010 0.96986 1.21124 1.01316 0.97772 0.95028 1.20664 0.94743 0.93502 0.94291 1.18179 0.93738 0.96057 0.90396 1.21331 1.14363 1.26247 0.94846 0.92920 1.25849 0.94979 0.96312 1.01868 1.70059 1.21335 1.38661 1.26596 0.85494 0.78831 0.78720 0.78328 1.19514 1.20479 1.19401 1.21044 0.95394 1.01339 0.97910 1.21142 0.98176 0.96275 0.93137 0.91211 0.92923 0.91637 0.92241 0.89804 0.88462 0.89596 0.87370 0.91766 0.94370 0.90846 0.92028 0.90848 0.93102 0.82218 0.85084 0.96781 0.97431 0.92486 0.86022 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.14 -1.93 5.20 30.59 0.16 -1.77 16 3 C 0.09 1.52 4.88 86.38 0.42 1.94 16 4 N -0.60 -13.38 2.52 -825.22 -2.08 -15.46 16 5 C 0.11 2.04 5.31 86.38 0.46 2.50 16 6 C -0.14 -2.29 6.26 30.59 0.19 -2.10 16 7 C -0.14 -1.83 9.91 71.98 0.71 -1.11 16 8 C 0.56 17.59 7.32 86.79 0.64 18.23 16 9 O -0.58 -22.02 16.54 -3.89 -0.06 -22.08 16 10 C -0.17 -5.48 5.10 -20.09 -0.10 -5.58 16 11 C -0.08 -2.45 7.41 22.53 0.17 -2.28 16 12 C -0.13 -4.84 9.68 22.23 0.22 -4.63 16 13 C -0.03 -1.35 5.08 -19.81 -0.10 -1.45 16 14 C 0.05 2.75 5.10 29.10 0.15 2.90 16 15 C -0.53 -29.75 9.09 25.60 0.23 -29.52 16 16 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 17 C 0.01 0.48 5.46 84.65 0.46 0.94 16 18 N -0.93 -54.73 13.29 21.45 0.28 -54.44 16 19 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 C -0.14 -5.47 9.68 22.23 0.22 -5.26 16 24 C -0.07 -2.43 9.64 22.53 0.22 -2.21 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.99 6.22 -2.38 -0.01 0.97 16 29 H 0.08 0.88 7.50 -2.39 -0.02 0.86 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.75 4.97 -2.39 -0.01 1.74 16 32 H 0.11 1.25 7.34 -2.39 -0.02 1.24 16 33 H 0.06 1.42 7.48 -2.39 -0.02 1.40 16 34 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.16 3.81 3.73 -2.91 -0.01 3.80 16 40 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.01 0.75 8.08 -2.39 -0.02 0.73 16 42 H 0.01 0.41 8.08 -2.39 -0.02 0.39 16 43 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 44 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 45 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -67.95 365.14 5.87 -62.08 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.95 Total: 14.49 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 4.75 Total: -30.57 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -1.79 Total: -69.90 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.06 Total: -22.08 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.95 5.87 -62.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.656 kcal (2) G-P(sol) polarization free energy of solvation -67.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds