Wall clock time and date at job start Tue Mar 31 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47042 * 2 1 4 4 H 1.09005 * 109.47223 * 55.01758 * 3 2 1 5 5 C 1.50703 * 109.47226 * 175.01855 * 3 2 1 6 6 H 1.07993 * 120.00054 * 119.99990 * 5 3 2 7 7 C 1.37878 * 119.99893 * 300.00030 * 5 3 2 8 8 N 1.31518 * 119.99869 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00085 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47081 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47039 * 119.99761 * 9 7 5 12 12 H 1.48490 * 109.47074 * 239.99903 * 9 7 5 13 13 N 1.46904 * 109.47160 * 295.01625 * 3 2 1 14 14 C 1.46901 * 110.99828 * 156.09024 * 13 3 2 15 15 H 1.08996 * 109.67410 * 34.29432 * 14 13 3 16 16 C 1.53328 * 109.67210 * 154.79873 * 14 13 3 17 17 C 1.52738 * 108.37164 * 189.59257 * 16 14 13 18 18 C 1.50641 * 110.58024 * 308.82612 * 17 16 14 19 19 C 1.38830 * 117.69614 * 198.06802 * 18 17 16 20 20 C 1.38426 * 120.50025 * 180.61538 * 19 18 17 21 21 O 1.35897 * 120.17492 * 179.76272 * 20 19 18 22 22 C 1.42902 * 117.00096 * 179.72033 * 21 20 19 23 23 C 1.38758 * 119.64993 * 359.48363 * 20 19 18 24 24 C 1.37839 * 119.71775 * 0.13394 * 23 20 19 25 25 C 1.37703 * 122.56253 * 17.91963 * 18 17 16 26 26 C 1.50658 * 122.53755 * 359.14225 * 25 18 17 27 27 H 1.09008 * 109.47000 * 295.43209 * 1 2 3 28 28 H 1.09002 * 109.47391 * 55.43430 * 1 2 3 29 29 H 1.08996 * 109.47105 * 175.43836 * 1 2 3 30 30 H 1.08998 * 109.47315 * 240.00007 * 2 1 3 31 31 H 1.08997 * 109.47680 * 119.99678 * 2 1 3 32 32 H 0.97000 * 119.99957 * 180.02562 * 8 7 5 33 33 H 1.00896 * 111.00106 * 280.05021 * 13 3 2 34 34 H 1.08997 * 109.68375 * 69.87611 * 16 14 13 35 35 H 1.09000 * 109.71953 * 309.33482 * 16 14 13 36 36 H 1.08998 * 109.25481 * 188.53871 * 17 16 14 37 37 H 1.09003 * 109.21690 * 69.08951 * 17 16 14 38 38 H 1.07997 * 119.74992 * 0.33274 * 19 18 17 39 39 H 1.09003 * 109.46968 * 299.99912 * 22 21 20 40 40 H 1.08998 * 109.47152 * 60.00098 * 22 21 20 41 41 H 1.09003 * 109.47063 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.14474 * 180.10766 * 23 20 19 43 43 H 1.07994 * 119.68984 * 179.97438 * 24 23 20 44 44 H 1.08993 * 109.25060 * 138.11690 * 26 25 18 45 45 H 1.09000 * 109.24844 * 257.53614 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6055 1.9815 0.8420 5 6 3.5419 1.4444 0.1234 6 1 4.1469 1.8890 -0.6528 7 6 4.1436 0.8784 1.2273 8 7 3.4068 0.3373 2.1728 9 14 6.0053 0.8813 1.3806 10 1 6.5987 1.5475 0.1935 11 1 6.3997 1.6167 2.6090 12 1 6.4974 -0.5174 1.4615 13 7 1.6510 2.0995 -1.2551 14 6 1.5973 3.5583 -1.0911 15 1 2.3690 3.8774 -0.3905 16 6 1.8178 4.2387 -2.4473 17 6 1.9962 5.7371 -2.2109 18 6 0.8742 6.2766 -1.3627 19 6 0.6639 7.6488 -1.3678 20 6 -0.3429 8.2081 -0.5998 21 8 -0.5399 9.5527 -0.6061 22 6 -1.6017 10.0566 0.2067 23 6 -1.1536 7.3880 0.1719 24 6 -0.9474 6.0252 0.1689 25 6 0.0652 5.4643 -0.5999 26 6 0.2230 3.9664 -0.5648 27 1 -0.3633 0.4414 0.9282 28 1 -0.3634 0.5830 -0.8463 29 1 -0.3633 -1.0244 -0.0817 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.8300 -0.0606 2.9496 33 1 2.2741 1.8426 -2.0059 34 1 0.9529 4.0686 -3.0883 35 1 2.7115 3.8328 -2.9214 36 1 2.0022 6.2542 -3.1704 37 1 2.9454 5.9097 -1.7036 38 1 1.2933 8.2852 -1.9720 39 1 -2.5464 9.6207 -0.1184 40 1 -1.4189 9.7923 1.2482 41 1 -1.6501 11.1413 0.1099 42 1 -1.9426 7.8157 0.7728 43 1 -1.5783 5.3874 0.7701 44 1 0.1131 3.6174 0.4619 45 1 -0.5491 3.5091 -1.1837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255149679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:07 Heat of formation + Delta-G solvation = -35.044996 kcal Electronic energy + Delta-G solvation = -23237.131459 eV Core-core repulsion = 20025.600406 eV Total energy + Delta-G solvation = -3211.531053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.32385 -38.60007 -36.47194 -34.43986 -32.51534 -31.66952 -30.64878 -29.27756 -28.26509 -26.77382 -25.59013 -23.45527 -22.59139 -22.09027 -21.32826 -19.39238 -18.99510 -17.61358 -16.60997 -16.21804 -15.81503 -15.53088 -14.78216 -14.65998 -14.36757 -13.80197 -13.58633 -13.52777 -13.11971 -13.05916 -12.70155 -12.63990 -12.22267 -11.96383 -11.90406 -11.76394 -11.33747 -11.25171 -11.12423 -10.90981 -10.67947 -10.65655 -10.53972 -10.36722 -10.14277 -9.87508 -9.55219 -9.39285 -9.00957 -8.64331 -8.35896 -7.87535 -7.24162 -5.98376 -4.11145 1.43059 1.57093 3.22454 3.26331 3.35066 3.37900 3.84262 4.40357 4.77076 4.85845 4.94513 4.98530 5.02872 5.22789 5.24941 5.27922 5.28213 5.35586 5.48176 5.65140 5.75194 5.88033 5.96767 6.05496 6.13292 6.20899 6.31001 6.34114 6.41172 6.44145 6.53572 6.56408 6.62827 6.73823 6.85089 6.92538 7.00558 7.15654 7.19975 7.42698 7.47682 7.62671 7.79727 8.11507 8.19023 8.36484 8.69789 9.02402 9.56598 11.01517 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.003872 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.089801 B = 7228.836851 C = 7625.427240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.686 5.686 14 C 0.094 3.906 15 H 0.051 0.949 16 C -0.118 4.118 17 C -0.079 4.079 18 C -0.036 4.036 19 C -0.155 4.155 20 C 0.113 3.887 21 O -0.322 6.322 22 C 0.029 3.971 23 C -0.209 4.209 24 C -0.082 4.082 25 C -0.095 4.095 26 C -0.064 4.064 27 H 0.035 0.965 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.029 0.971 31 H 0.089 0.911 32 H 0.260 0.740 33 H 0.329 0.671 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.125 0.875 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.071 0.929 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.893 13.837 -5.462 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.315 5.315 14 C -0.016 4.016 15 H 0.070 0.930 16 C -0.156 4.156 17 C -0.116 4.116 18 C -0.036 4.036 19 C -0.174 4.174 20 C 0.068 3.932 21 O -0.236 6.236 22 C -0.066 4.066 23 C -0.228 4.228 24 C -0.100 4.100 25 C -0.095 4.095 26 C -0.102 4.102 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.146 0.854 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.143 0.857 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.114 0.886 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.090 0.910 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.457 13.796 -5.272 17.538 hybrid contribution 1.759 0.220 0.596 1.871 sum -7.698 14.016 -4.675 16.660 Atomic orbital electron populations 1.21715 0.99062 0.98427 1.00341 1.21493 0.92073 0.99353 1.01581 1.19164 0.92652 0.91128 0.86313 0.94946 1.21917 0.92865 1.37964 1.05515 0.92857 1.24929 0.97815 0.95050 0.95738 1.69887 1.34663 1.38376 1.09394 0.86630 0.86248 0.77705 0.77949 1.19928 1.21090 1.20992 1.60878 1.56317 1.04723 1.09616 1.21259 0.95518 0.89845 0.95015 0.93048 1.21739 1.01890 0.93722 0.98256 1.20486 0.96287 0.96479 0.98349 1.19461 0.96101 0.91678 0.96345 1.20355 0.99513 0.94496 1.02996 1.18840 0.95768 0.82077 0.96488 1.86032 1.52312 1.19692 1.65547 1.22992 0.89209 0.99843 0.94546 1.21092 1.02794 0.94639 1.04271 1.20990 0.97135 0.94002 0.97905 1.19778 0.95822 0.96521 0.97415 1.20438 0.98713 0.88968 1.02089 0.94627 0.93076 0.95757 0.95203 0.89267 0.92993 0.85423 0.91539 0.91564 0.90934 0.90366 0.85696 0.92852 0.92789 0.88578 0.85896 0.85878 0.91044 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.85 37.15 0.37 -2.44 16 2 C -0.11 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.18 1.80 -68.86 -0.12 5.05 16 4 H 0.03 0.87 7.30 -51.93 -0.38 0.49 16 5 C -0.54 -14.40 8.22 -34.44 -0.28 -14.68 16 6 H 0.05 1.41 7.76 -52.49 -0.41 1.00 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.83 11.29 55.43 0.63 -24.21 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 N -0.69 -13.78 5.43 -100.92 -0.55 -14.33 16 14 C 0.09 1.70 2.31 -67.69 -0.16 1.55 16 15 H 0.05 1.09 7.56 -51.93 -0.39 0.70 16 16 C -0.12 -1.75 5.36 -26.70 -0.14 -1.90 16 17 C -0.08 -1.06 5.67 -28.05 -0.16 -1.22 16 18 C -0.04 -0.52 5.74 -104.63 -0.60 -1.12 16 19 C -0.15 -2.16 9.54 -39.29 -0.38 -2.53 16 20 C 0.11 1.54 6.68 -39.32 -0.26 1.27 16 21 O -0.32 -3.99 10.50 -19.42 -0.20 -4.19 16 22 C 0.03 0.24 9.82 101.05 0.99 1.23 16 23 C -0.21 -2.69 9.04 -39.54 -0.36 -3.05 16 24 C -0.08 -1.15 9.60 -39.46 -0.38 -1.53 16 25 C -0.09 -1.46 5.74 -104.57 -0.60 -2.06 16 26 C -0.06 -1.08 5.14 -28.05 -0.14 -1.23 16 27 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.05 0.99 7.63 -51.93 -0.40 0.60 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.33 6.54 7.95 -39.29 -0.31 6.23 16 34 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.07 0.96 7.94 -51.93 -0.41 0.54 16 36 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.13 1.55 8.05 -52.49 -0.42 1.13 16 39 H 0.05 0.38 7.67 -51.93 -0.40 -0.01 16 40 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.12 1.27 6.33 -52.49 -0.33 0.93 16 43 H 0.12 1.53 8.05 -52.49 -0.42 1.11 16 44 H 0.07 1.30 7.62 -51.93 -0.40 0.91 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -28.43 354.21 -9.77 -38.20 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.49 Total: 6.75 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -2.47 Total: -23.58 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.08 Total: -38.54 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.20 Total: -4.19 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.43 -9.77 -38.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.153 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds