Wall clock time and date at job start Tue Mar 31 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47042 * 2 1 4 4 H 1.09005 * 109.47223 * 55.01758 * 3 2 1 5 5 C 1.50703 * 109.47226 * 175.01855 * 3 2 1 6 6 H 1.07993 * 120.00054 * 119.99990 * 5 3 2 7 7 C 1.37878 * 119.99893 * 300.00030 * 5 3 2 8 8 N 1.31518 * 119.99869 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00085 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47081 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47039 * 119.99761 * 9 7 5 12 12 H 1.48490 * 109.47074 * 239.99903 * 9 7 5 13 13 N 1.46904 * 109.47160 * 295.01625 * 3 2 1 14 14 C 1.46901 * 110.99828 * 156.09024 * 13 3 2 15 15 H 1.08996 * 109.67410 * 34.29432 * 14 13 3 16 16 C 1.53328 * 109.67210 * 154.79873 * 14 13 3 17 17 C 1.52738 * 108.37164 * 189.59257 * 16 14 13 18 18 C 1.50641 * 110.58024 * 308.82612 * 17 16 14 19 19 C 1.38830 * 117.69614 * 198.06802 * 18 17 16 20 20 C 1.38426 * 120.50025 * 180.61538 * 19 18 17 21 21 O 1.35897 * 120.17492 * 179.76272 * 20 19 18 22 22 C 1.42902 * 117.00096 * 179.72033 * 21 20 19 23 23 C 1.38758 * 119.64993 * 359.48363 * 20 19 18 24 24 C 1.37839 * 119.71775 * 0.13394 * 23 20 19 25 25 C 1.37703 * 122.56253 * 17.91963 * 18 17 16 26 26 C 1.50658 * 122.53755 * 359.14225 * 25 18 17 27 27 H 1.09008 * 109.47000 * 295.43209 * 1 2 3 28 28 H 1.09002 * 109.47391 * 55.43430 * 1 2 3 29 29 H 1.08996 * 109.47105 * 175.43836 * 1 2 3 30 30 H 1.08998 * 109.47315 * 240.00007 * 2 1 3 31 31 H 1.08997 * 109.47680 * 119.99678 * 2 1 3 32 32 H 0.97000 * 119.99957 * 180.02562 * 8 7 5 33 33 H 1.00896 * 111.00106 * 280.05021 * 13 3 2 34 34 H 1.08997 * 109.68375 * 69.87611 * 16 14 13 35 35 H 1.09000 * 109.71953 * 309.33482 * 16 14 13 36 36 H 1.08998 * 109.25481 * 188.53871 * 17 16 14 37 37 H 1.09003 * 109.21690 * 69.08951 * 17 16 14 38 38 H 1.07997 * 119.74992 * 0.33274 * 19 18 17 39 39 H 1.09003 * 109.46968 * 299.99912 * 22 21 20 40 40 H 1.08998 * 109.47152 * 60.00098 * 22 21 20 41 41 H 1.09003 * 109.47063 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.14474 * 180.10766 * 23 20 19 43 43 H 1.07994 * 119.68984 * 179.97438 * 24 23 20 44 44 H 1.08993 * 109.25060 * 138.11690 * 26 25 18 45 45 H 1.09000 * 109.24844 * 257.53614 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6055 1.9815 0.8420 5 6 3.5419 1.4444 0.1234 6 1 4.1469 1.8890 -0.6528 7 6 4.1436 0.8784 1.2273 8 7 3.4068 0.3373 2.1728 9 14 6.0053 0.8813 1.3806 10 1 6.5987 1.5475 0.1935 11 1 6.3997 1.6167 2.6090 12 1 6.4974 -0.5174 1.4615 13 7 1.6510 2.0995 -1.2551 14 6 1.5973 3.5583 -1.0911 15 1 2.3690 3.8774 -0.3905 16 6 1.8178 4.2387 -2.4473 17 6 1.9962 5.7371 -2.2109 18 6 0.8742 6.2766 -1.3627 19 6 0.6639 7.6488 -1.3678 20 6 -0.3429 8.2081 -0.5998 21 8 -0.5399 9.5527 -0.6061 22 6 -1.6017 10.0566 0.2067 23 6 -1.1536 7.3880 0.1719 24 6 -0.9474 6.0252 0.1689 25 6 0.0652 5.4643 -0.5999 26 6 0.2230 3.9664 -0.5648 27 1 -0.3633 0.4414 0.9282 28 1 -0.3634 0.5830 -0.8463 29 1 -0.3633 -1.0244 -0.0817 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.8300 -0.0606 2.9496 33 1 2.2741 1.8426 -2.0059 34 1 0.9529 4.0686 -3.0883 35 1 2.7115 3.8328 -2.9214 36 1 2.0022 6.2542 -3.1704 37 1 2.9454 5.9097 -1.7036 38 1 1.2933 8.2852 -1.9720 39 1 -2.5464 9.6207 -0.1184 40 1 -1.4189 9.7923 1.2482 41 1 -1.6501 11.1413 0.1099 42 1 -1.9426 7.8157 0.7728 43 1 -1.5783 5.3874 0.7701 44 1 0.1131 3.6174 0.4619 45 1 -0.5491 3.5091 -1.1837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255149679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:06 Heat of formation + Delta-G solvation = -50.139322 kcal Electronic energy + Delta-G solvation = -23237.785998 eV Core-core repulsion = 20025.600406 eV Total energy + Delta-G solvation = -3212.185592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.37281 -39.71622 -37.97884 -35.92597 -34.01755 -33.30032 -32.12900 -30.40656 -29.50301 -28.04325 -27.10268 -24.94723 -24.11275 -23.18735 -22.60307 -21.27012 -20.22806 -18.68806 -18.52381 -17.26185 -16.89245 -16.69769 -16.59152 -15.81586 -15.61665 -15.42432 -14.86301 -14.84451 -14.54458 -14.32931 -14.09675 -13.90956 -13.52652 -13.28962 -13.16728 -13.06142 -12.98889 -12.78289 -12.71916 -12.53051 -12.25077 -11.94863 -11.84514 -11.77475 -11.58270 -11.48598 -11.26305 -11.14235 -10.87588 -10.43626 -9.69631 -9.03220 -8.94349 -8.03701 -6.25624 0.37738 0.48084 1.36542 1.39475 1.49057 2.38906 2.40548 2.76633 3.15733 3.55584 3.73916 3.90526 4.00231 4.15429 4.24173 4.27981 4.38846 4.40783 4.41030 4.61115 4.64707 4.68857 4.72684 4.74300 4.77703 4.81543 4.95924 5.00648 5.04518 5.08465 5.12855 5.21487 5.28501 5.37312 5.44002 5.45205 5.47675 5.56949 5.68686 5.77354 5.82098 5.88684 6.15134 6.25071 6.43675 6.48738 6.88009 7.07091 7.45963 8.92525 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.003872 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.089801 B = 7228.836851 C = 7625.427240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.226 3.774 4 H -0.003 1.003 5 C -0.556 4.556 6 H 0.050 0.950 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.675 5.675 14 C 0.095 3.905 15 H 0.014 0.986 16 C -0.109 4.109 17 C -0.075 4.075 18 C -0.044 4.044 19 C -0.165 4.165 20 C 0.111 3.889 21 O -0.335 6.335 22 C 0.019 3.981 23 C -0.208 4.208 24 C -0.089 4.089 25 C -0.119 4.119 26 C -0.052 4.052 27 H 0.028 0.972 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.028 0.972 31 H 0.058 0.942 32 H 0.260 0.740 33 H 0.332 0.668 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.139 0.861 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.120 0.880 42 H 0.150 0.850 43 H 0.133 0.867 44 H 0.046 0.954 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.380 15.385 -6.543 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.015 0.985 5 C -0.595 4.595 6 H 0.068 0.932 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.304 5.304 14 C -0.016 4.016 15 H 0.033 0.967 16 C -0.147 4.147 17 C -0.112 4.112 18 C -0.044 4.044 19 C -0.183 4.183 20 C 0.066 3.934 21 O -0.249 6.249 22 C -0.076 4.076 23 C -0.226 4.226 24 C -0.108 4.108 25 C -0.119 4.119 26 C -0.090 4.090 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.149 0.851 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.157 0.843 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.138 0.862 42 H 0.167 0.833 43 H 0.151 0.849 44 H 0.065 0.935 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.954 15.358 -6.363 19.376 hybrid contribution 1.852 -0.160 0.966 2.094 sum -8.102 15.198 -5.398 18.048 Atomic orbital electron populations 1.21569 0.96435 0.99876 1.00395 1.21356 0.94410 0.98479 0.99926 1.18888 0.91287 0.91353 0.86800 0.98460 1.22235 0.94260 1.37581 1.05455 0.93188 1.25653 1.01914 0.94928 0.95592 1.70018 1.36211 1.39047 1.09796 0.85673 0.81366 0.77736 0.77849 1.19352 1.21042 1.20520 1.60822 1.55719 1.06012 1.07863 1.21272 0.95263 0.88607 0.96445 0.96739 1.21659 1.02526 0.94450 0.96036 1.20491 0.95715 0.95486 0.99554 1.19588 0.96209 0.92165 0.96479 1.20533 1.00039 0.94282 1.03459 1.19016 0.95474 0.82922 0.96016 1.86024 1.53737 1.18777 1.66338 1.23322 0.88539 1.01301 0.94398 1.21345 1.03176 0.93998 1.04101 1.21163 0.96946 0.94903 0.97742 1.19742 0.97446 0.95532 0.99217 1.20240 0.97808 0.90519 1.00454 0.95312 0.92060 0.93708 0.95285 0.92337 0.93023 0.85142 0.90489 0.91075 0.88176 0.90821 0.84331 0.91727 0.92130 0.86189 0.83290 0.84945 0.93537 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.85 71.98 0.71 -4.35 16 2 C -0.10 -4.95 5.45 30.59 0.17 -4.79 16 3 C 0.23 11.20 1.80 44.17 0.08 11.28 16 4 H 0.00 -0.14 7.30 -2.38 -0.02 -0.16 16 5 C -0.56 -30.16 8.22 25.60 0.21 -29.95 16 6 H 0.05 2.68 7.76 -2.91 -0.02 2.66 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -52.52 11.29 21.45 0.24 -52.28 16 9 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 N -0.68 -27.55 5.43 -473.20 -2.57 -30.12 16 14 C 0.09 3.49 2.31 44.93 0.10 3.60 16 15 H 0.01 0.64 7.56 -2.39 -0.02 0.63 16 16 C -0.11 -3.14 5.36 30.62 0.16 -2.97 16 17 C -0.08 -1.94 5.67 29.74 0.17 -1.77 16 18 C -0.04 -1.26 5.74 -19.87 -0.11 -1.38 16 19 C -0.16 -4.33 9.54 22.46 0.21 -4.12 16 20 C 0.11 2.81 6.68 22.44 0.15 2.96 16 21 O -0.33 -7.52 10.50 -92.40 -0.97 -8.49 16 22 C 0.02 0.25 9.82 113.37 1.11 1.36 16 23 C -0.21 -4.97 9.04 22.30 0.20 -4.77 16 24 C -0.09 -2.44 9.60 22.35 0.21 -2.23 16 25 C -0.12 -3.65 5.74 -19.83 -0.11 -3.76 16 26 C -0.05 -1.81 5.14 29.74 0.15 -1.65 16 27 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.06 2.33 7.63 -2.39 -0.02 2.31 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 3.19 5.95 -2.39 -0.01 3.18 16 32 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 33 H 0.33 13.20 7.95 -89.70 -0.71 12.49 16 34 H 0.08 2.08 8.10 -2.39 -0.02 2.06 16 35 H 0.07 1.97 7.94 -2.39 -0.02 1.96 16 36 H 0.10 2.04 8.12 -2.39 -0.02 2.02 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.14 3.16 8.05 -2.91 -0.02 3.14 16 39 H 0.06 0.74 7.67 -2.39 -0.02 0.72 16 40 H 0.06 0.75 7.67 -2.39 -0.02 0.73 16 41 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.15 2.67 6.33 -2.91 -0.02 2.65 16 43 H 0.13 3.24 8.05 -2.91 -0.02 3.21 16 44 H 0.05 1.79 7.62 -2.39 -0.02 1.77 16 45 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -62.11 354.21 2.85 -59.26 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.25 Total: 26.94 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 3.87 Total: -41.04 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -2.33 Total: -82.40 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.97 Total: -8.49 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -62.11 2.85 -59.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.119 kcal (2) G-P(sol) polarization free energy of solvation -62.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds