Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46808 * 2 1 4 4 H 1.09003 * 109.46976 * 306.28873 * 3 2 1 5 5 C 1.50708 * 109.46969 * 186.29409 * 3 2 1 6 6 H 1.07993 * 119.99878 * 245.72187 * 5 3 2 7 7 C 1.37877 * 120.00015 * 65.71850 * 5 3 2 8 8 N 1.31511 * 120.00169 * 190.92818 * 7 5 3 9 9 Si 1.86805 * 119.99829 * 10.92939 * 7 5 3 10 10 H 1.48498 * 109.47328 * 88.58219 * 9 7 5 11 11 H 1.48505 * 109.46718 * 208.58194 * 9 7 5 12 12 H 1.48506 * 109.47197 * 328.58078 * 9 7 5 13 13 N 1.46896 * 109.47746 * 66.29651 * 3 2 1 14 14 C 1.46897 * 111.00139 * 207.89664 * 13 3 2 15 15 H 1.08997 * 109.68173 * 321.63536 * 14 13 3 16 16 C 1.53331 * 109.68046 * 201.08570 * 14 13 3 17 17 C 1.52733 * 108.37740 * 170.36976 * 16 14 13 18 18 C 1.50644 * 110.59176 * 51.09560 * 17 16 14 19 19 C 1.38834 * 117.69968 * 162.46276 * 18 17 16 20 20 C 1.38430 * 120.50574 * 179.61053 * 19 18 17 21 21 O 1.35898 * 120.17357 * 180.02562 * 20 19 18 22 22 C 1.42894 * 117.00195 * 179.97438 * 21 20 19 23 23 C 1.38761 * 119.65011 * 359.82606 * 20 19 18 24 24 C 1.37830 * 119.71178 * 0.57530 * 23 20 19 25 25 C 1.37702 * 122.56651 * 342.29599 * 18 17 16 26 26 C 1.50657 * 122.54099 * 0.61919 * 25 18 17 27 27 H 1.09000 * 109.46855 * 184.42040 * 1 2 3 28 28 H 1.09005 * 109.46794 * 304.41583 * 1 2 3 29 29 H 1.08993 * 109.47389 * 64.41776 * 1 2 3 30 30 H 1.08996 * 109.47357 * 239.99936 * 2 1 3 31 31 H 1.09001 * 109.46824 * 119.99428 * 2 1 3 32 32 H 0.96996 * 119.99947 * 179.97438 * 8 7 5 33 33 H 1.00905 * 110.99723 * 331.84461 * 13 3 2 34 34 H 1.09001 * 109.68392 * 290.08823 * 16 14 13 35 35 H 1.08999 * 109.68530 * 50.61342 * 16 14 13 36 36 H 1.08994 * 109.25338 * 171.38671 * 17 16 14 37 37 H 1.09003 * 109.25228 * 290.81337 * 17 16 14 38 38 H 1.07995 * 119.74624 * 359.63685 * 19 18 17 39 39 H 1.08994 * 109.47690 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.47102 * 299.99961 * 22 21 20 41 41 H 1.09009 * 109.46916 * 59.99231 * 22 21 20 42 42 H 1.08002 * 120.14461 * 180.34498 * 23 20 19 43 43 H 1.08001 * 119.68779 * 179.69138 * 24 23 20 44 44 H 1.08999 * 109.24821 * 102.56566 * 26 25 18 45 45 H 1.08999 * 109.25228 * 221.99506 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5876 1.9878 -0.8284 5 6 3.5390 1.4454 -0.1558 6 1 4.1649 1.7996 0.6499 7 6 4.1112 0.9958 -1.3268 8 7 5.4093 0.7945 -1.3894 9 14 3.0427 0.6727 -2.8246 10 1 2.9165 1.9197 -3.6211 11 1 3.6663 -0.3863 -3.6583 12 1 1.6957 0.2277 -2.3851 13 7 1.6783 2.0899 1.2681 14 6 1.5288 3.5409 1.0945 15 1 2.2895 3.9085 0.4059 16 6 1.6769 4.2411 2.4506 17 6 1.7584 5.7469 2.2086 18 6 0.6203 6.2055 1.3347 19 6 0.3250 7.5619 1.3186 20 6 -0.7039 8.0478 0.5301 21 8 -0.9867 9.3770 0.5191 22 6 -2.0619 9.8045 -0.3194 23 6 -1.4421 7.1711 -0.2520 24 6 -1.1520 5.8239 -0.2276 25 6 -0.1192 5.3363 0.5639 26 6 0.1399 3.8524 0.5409 27 1 -0.3633 -1.0246 0.0792 28 1 -0.3633 0.5809 0.8478 29 1 -0.3634 0.4437 -0.9268 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.8118 0.4778 -2.2131 33 1 0.8396 1.6837 1.6551 34 1 0.8133 4.0160 3.0763 35 1 2.5867 3.8981 2.9434 36 1 1.7099 6.2677 3.1648 37 1 2.7040 5.9817 1.7198 38 1 0.9027 8.2433 1.9255 39 1 -2.1817 10.8845 -0.2344 40 1 -1.8414 9.5435 -1.3544 41 1 -2.9832 9.3114 -0.0087 42 1 -2.2429 7.5422 -0.8744 43 1 -1.7301 5.1412 -0.8328 44 1 -0.6109 3.3471 1.1484 45 1 0.0730 3.4918 -0.4855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255149680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = -23.917075 kcal Electronic energy + Delta-G solvation = -23353.256499 eV Core-core repulsion = 20142.207989 eV Total energy + Delta-G solvation = -3211.048510 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.41643 -38.73988 -36.80191 -34.61893 -32.60953 -31.93376 -30.80470 -29.37252 -28.35390 -27.12393 -25.97464 -23.45429 -22.56593 -22.18373 -21.48363 -19.74442 -19.21424 -17.67568 -16.72592 -16.36606 -15.87353 -15.56162 -15.03215 -14.77800 -14.27485 -14.16071 -13.79368 -13.74954 -13.36219 -13.15341 -12.90419 -12.54857 -12.49730 -12.20492 -12.18187 -11.90455 -11.79368 -11.66681 -11.14411 -10.99503 -10.80585 -10.74360 -10.56102 -10.30504 -10.21372 -10.06370 -9.88891 -9.35301 -9.12718 -8.70948 -8.46270 -7.98174 -7.32311 -6.01847 -3.95836 1.35546 1.47509 3.16420 3.28637 3.37310 3.39800 3.75295 4.45258 4.70879 4.76997 4.86534 4.93082 4.94671 5.14432 5.22287 5.23774 5.26124 5.28406 5.31574 5.49324 5.66815 5.75818 5.80679 5.84608 5.88315 5.91275 6.00791 6.03897 6.10882 6.23203 6.27116 6.35368 6.39944 6.51923 6.59126 6.67565 6.71631 6.77224 6.82828 6.90122 7.00561 7.26710 7.35663 7.80825 8.02407 8.32411 8.80697 9.14088 9.63843 11.11744 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019826 B = 0.004023 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.949672 B = 6957.826877 C = 7067.761030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C 0.193 3.807 4 H -0.003 1.003 5 C -0.496 4.496 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.855 3.145 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.668 5.668 14 C 0.095 3.905 15 H 0.089 0.911 16 C -0.106 4.106 17 C -0.082 4.082 18 C -0.031 4.031 19 C -0.155 4.155 20 C 0.116 3.884 21 O -0.321 6.321 22 C 0.029 3.971 23 C -0.211 4.211 24 C -0.083 4.083 25 C -0.098 4.098 26 C -0.107 4.107 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.262 0.738 33 H 0.318 0.682 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.069 0.931 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.640 12.665 3.778 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C 0.085 3.915 4 H 0.015 0.985 5 C -0.535 4.535 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.683 3.317 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.174 1.174 13 N -0.297 5.297 14 C -0.016 4.016 15 H 0.107 0.893 16 C -0.144 4.144 17 C -0.119 4.119 18 C -0.031 4.031 19 C -0.173 4.173 20 C 0.072 3.928 21 O -0.235 6.235 22 C -0.066 4.066 23 C -0.229 4.229 24 C -0.101 4.101 25 C -0.098 4.098 26 C -0.146 4.146 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.087 0.913 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.728 12.769 3.978 19.895 hybrid contribution -1.657 -0.137 -1.846 2.485 sum -16.385 12.632 2.132 20.799 Atomic orbital electron populations 1.21920 0.98675 1.00277 1.00390 1.22231 0.92438 1.00382 1.02279 1.19517 0.96677 0.89390 0.85960 0.98517 1.21031 0.89281 1.41719 1.01455 0.90218 1.24924 0.94667 0.95115 0.98451 1.69932 1.10404 1.46258 1.27109 0.87404 0.82347 0.78130 0.83832 1.20850 1.21551 1.17361 1.60657 1.38300 1.01271 1.29483 1.21497 0.94224 0.89710 0.96159 0.89325 1.21536 1.02537 0.92656 0.97660 1.20538 0.96084 0.97126 0.98148 1.19523 0.96013 0.91559 0.95998 1.20390 0.98928 0.95224 1.02786 1.18866 0.95426 0.82352 0.96205 1.86041 1.51772 1.21336 1.64307 1.22999 0.88715 1.00844 0.94055 1.21081 1.03431 0.94313 1.04107 1.20983 0.96697 0.94535 0.97904 1.19600 0.96386 0.95949 0.97909 1.21297 0.99901 0.91269 1.02156 0.93808 0.93505 0.93867 0.91720 0.91910 0.92856 0.86337 0.92526 0.90210 0.90768 0.89971 0.85477 0.88491 0.92784 0.92862 0.85883 0.86130 0.91294 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.82 37.16 0.36 -2.23 16 2 C -0.13 -2.82 4.72 -26.73 -0.13 -2.94 16 3 C 0.19 4.36 1.39 -68.86 -0.10 4.27 16 4 H 0.00 -0.06 5.79 -51.93 -0.30 -0.36 16 5 C -0.50 -13.76 9.10 -34.44 -0.31 -14.07 16 6 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 7 C 0.07 1.99 5.38 -17.82 -0.10 1.89 16 8 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 9 Si 0.86 20.95 25.80 -169.99 -4.39 16.56 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.25 -5.63 5.23 56.52 0.30 -5.34 16 13 N -0.67 -13.01 6.06 -100.92 -0.61 -13.62 16 14 C 0.10 1.66 2.30 -67.68 -0.16 1.50 16 15 H 0.09 1.82 7.75 -51.93 -0.40 1.42 16 16 C -0.11 -1.57 5.60 -26.70 -0.15 -1.72 16 17 C -0.08 -1.08 5.67 -28.05 -0.16 -1.24 16 18 C -0.03 -0.44 5.74 -104.62 -0.60 -1.04 16 19 C -0.15 -2.09 9.55 -39.29 -0.38 -2.46 16 20 C 0.12 1.53 6.68 -39.32 -0.26 1.27 16 21 O -0.32 -3.85 10.50 -19.42 -0.20 -4.06 16 22 C 0.03 0.23 9.82 101.05 0.99 1.22 16 23 C -0.21 -2.60 9.04 -39.54 -0.36 -2.96 16 24 C -0.08 -1.10 9.60 -39.46 -0.38 -1.48 16 25 C -0.10 -1.43 5.74 -104.57 -0.60 -2.03 16 26 C -0.11 -1.65 4.94 -28.05 -0.14 -1.78 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.70 6.40 -51.93 -0.33 0.37 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.45 4.61 -51.93 -0.24 1.21 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.32 5.51 6.17 -39.29 -0.24 5.27 16 34 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.13 1.53 8.05 -52.49 -0.42 1.10 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 41 H 0.05 0.36 7.68 -51.92 -0.40 -0.03 16 42 H 0.12 1.21 6.33 -52.49 -0.33 0.88 16 43 H 0.12 1.40 8.05 -52.49 -0.42 0.98 16 44 H 0.07 0.97 7.96 -51.93 -0.41 0.56 16 45 H 0.07 1.15 7.39 -51.93 -0.38 0.76 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -30.82 346.11 -8.99 -39.81 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.33 Total: 6.57 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -2.45 Total: -23.80 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.16 Total: -40.31 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.20 Total: -4.06 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.39 Total: 16.56 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.82 -8.99 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.893 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds