Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47368 * 2 1 4 4 H 1.09004 * 109.46816 * 55.41459 * 3 2 1 5 5 C 1.50701 * 109.47490 * 175.41320 * 3 2 1 6 6 H 1.08002 * 120.00406 * 119.99831 * 5 3 2 7 7 C 1.37881 * 119.99890 * 300.00315 * 5 3 2 8 8 N 1.31521 * 120.00200 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99949 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46980 * 60.00513 * 9 7 5 11 11 H 1.48505 * 109.46936 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47466 * 300.00229 * 9 7 5 13 13 N 1.46894 * 109.47426 * 295.41538 * 3 2 1 14 14 C 1.46893 * 111.00190 * 152.29436 * 13 3 2 15 15 H 1.08995 * 109.68474 * 327.54816 * 14 13 3 16 16 C 1.53331 * 109.71382 * 207.01300 * 14 13 3 17 17 C 1.52727 * 108.37573 * 170.35731 * 16 14 13 18 18 C 1.50639 * 110.59747 * 51.09906 * 17 16 14 19 19 C 1.38832 * 117.70366 * 162.45973 * 18 17 16 20 20 C 1.38430 * 120.50634 * 179.60646 * 19 18 17 21 21 O 1.35894 * 120.17263 * 180.02562 * 20 19 18 22 22 C 1.42906 * 116.99837 * 180.02562 * 21 20 19 23 23 C 1.38765 * 119.65069 * 359.82820 * 20 19 18 24 24 C 1.37834 * 119.71143 * 0.57901 * 23 20 19 25 25 C 1.37708 * 122.56172 * 342.29217 * 18 17 16 26 26 C 1.50648 * 122.54068 * 0.62041 * 25 18 17 27 27 H 1.08997 * 109.46869 * 178.30260 * 1 2 3 28 28 H 1.09000 * 109.46702 * 298.30148 * 1 2 3 29 29 H 1.08995 * 109.46916 * 58.29795 * 1 2 3 30 30 H 1.08999 * 109.47151 * 240.00335 * 2 1 3 31 31 H 1.09004 * 109.47452 * 120.00150 * 2 1 3 32 32 H 0.96991 * 120.00070 * 179.97438 * 8 7 5 33 33 H 1.00904 * 110.99935 * 28.33650 * 13 3 2 34 34 H 1.09009 * 109.68096 * 290.07319 * 16 14 13 35 35 H 1.09000 * 109.68449 * 50.63454 * 16 14 13 36 36 H 1.09007 * 109.25475 * 171.38566 * 17 16 14 37 37 H 1.08996 * 109.25326 * 290.81230 * 17 16 14 38 38 H 1.07993 * 119.75004 * 359.63719 * 19 18 17 39 39 H 1.09003 * 109.47021 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.47124 * 299.99726 * 22 21 20 41 41 H 1.09000 * 109.47144 * 59.99385 * 22 21 20 42 42 H 1.07998 * 120.14411 * 180.33838 * 23 20 19 43 43 H 1.07996 * 119.69062 * 179.69240 * 24 23 20 44 44 H 1.09005 * 109.25032 * 102.57133 * 26 25 18 45 45 H 1.09002 * 109.25225 * 221.99214 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6112 1.9795 0.8461 5 6 3.5428 1.4440 0.1136 6 1 4.1429 1.8904 -0.6655 7 6 4.1517 0.8754 1.2123 8 7 3.4210 0.3321 2.1614 9 14 6.0143 0.8767 1.3528 10 1 6.5098 2.2766 1.3526 11 1 6.4158 0.2103 2.6178 12 1 6.5983 0.1448 0.2002 13 7 1.6430 2.1023 -1.2509 14 6 1.5031 3.5521 -1.0599 15 1 1.1571 3.7573 -0.0470 16 6 0.4973 4.1124 -2.0726 17 6 0.1924 5.5611 -1.6971 18 6 1.4683 6.3407 -1.5135 19 6 1.3874 7.7264 -1.5395 20 6 2.5226 8.4999 -1.3686 21 8 2.4355 9.8558 -1.3948 22 6 3.6493 10.5875 -1.2118 23 6 3.7493 7.8835 -1.1663 24 6 3.8278 6.5075 -1.1494 25 6 2.6880 5.7312 -1.3209 26 6 2.8500 4.2338 -1.2914 27 1 -0.3633 -1.0272 -0.0304 28 1 -0.3633 0.4872 0.9048 29 1 -0.3633 0.5400 -0.8743 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8493 -0.0682 2.9340 33 1 0.7920 1.7019 -1.6166 34 1 0.9254 4.0751 -3.0744 35 1 -0.4201 3.5246 -2.0426 36 1 -0.3988 6.0209 -2.4891 37 1 -0.3768 5.5794 -0.7678 38 1 0.4315 8.2046 -1.6937 39 1 3.4392 11.6563 -1.2540 40 1 4.0798 10.3404 -0.2413 41 1 4.3548 10.3240 -1.9998 42 1 4.6391 8.4793 -1.0267 43 1 4.7835 6.0281 -0.9969 44 1 3.2640 3.8983 -2.2424 45 1 3.5334 3.9619 -0.4869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255149682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = -29.880990 kcal Electronic energy + Delta-G solvation = -23327.665194 eV Core-core repulsion = 20116.358070 eV Total energy + Delta-G solvation = -3211.307125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27421 -38.57938 -36.55639 -34.47261 -32.43019 -31.81836 -30.50587 -29.28910 -28.11232 -26.69738 -25.93471 -23.28096 -22.70004 -22.00434 -21.36436 -19.48595 -19.01356 -17.57491 -16.35165 -16.18141 -15.77457 -15.40991 -14.78434 -14.64942 -14.42196 -13.90937 -13.56840 -13.53146 -13.23156 -12.99244 -12.68733 -12.52100 -12.37258 -12.12141 -11.83511 -11.76168 -11.54725 -11.13210 -10.97043 -10.89996 -10.67023 -10.66489 -10.54329 -10.41281 -10.09059 -9.80429 -9.59906 -9.39797 -8.99333 -8.59984 -8.30965 -7.80100 -7.21409 -5.93582 -3.96704 1.48218 1.63810 3.26540 3.34638 3.39380 3.42186 3.90338 4.46260 4.81367 4.89576 4.97209 5.02234 5.07125 5.21852 5.26674 5.31335 5.34989 5.40211 5.53448 5.63703 5.81102 5.89015 5.97118 6.01951 6.10553 6.16681 6.18645 6.22888 6.33737 6.41203 6.42718 6.48661 6.64753 6.80063 6.81732 6.87883 6.94861 7.10994 7.15213 7.22819 7.47996 7.54489 7.81396 7.96071 8.36754 8.44294 8.80430 9.10385 9.67537 11.11918 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016394 B = 0.004540 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.565073 B = 6165.353206 C = 7570.406371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.489 4.489 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.684 5.684 14 C 0.101 3.899 15 H 0.039 0.961 16 C -0.122 4.122 17 C -0.076 4.076 18 C -0.042 4.042 19 C -0.155 4.155 20 C 0.110 3.890 21 O -0.323 6.323 22 C 0.029 3.971 23 C -0.208 4.208 24 C -0.081 4.081 25 C -0.092 4.092 26 C -0.067 4.067 27 H 0.036 0.964 28 H 0.041 0.959 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.099 0.901 32 H 0.259 0.741 33 H 0.319 0.681 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.077 0.923 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 14.163 -6.883 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.316 5.316 14 C -0.009 4.009 15 H 0.057 0.943 16 C -0.160 4.160 17 C -0.114 4.114 18 C -0.042 4.042 19 C -0.174 4.174 20 C 0.066 3.934 21 O -0.237 6.237 22 C -0.066 4.066 23 C -0.227 4.227 24 C -0.100 4.100 25 C -0.093 4.093 26 C -0.105 4.105 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.069 0.931 33 H 0.138 0.862 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.142 0.858 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.095 0.905 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.027 14.219 -6.960 16.118 hybrid contribution 0.594 0.108 0.801 1.003 sum -2.433 14.327 -6.159 15.784 Atomic orbital electron populations 1.21885 0.99696 0.99486 0.99690 1.21795 0.91148 1.00594 1.03042 1.19222 0.95392 0.89819 0.84389 0.97964 1.21212 0.91175 1.35927 1.04479 0.91879 1.24956 0.97878 0.95783 0.95925 1.69859 1.34758 1.39320 1.09766 0.86671 0.86141 0.78094 0.77124 1.20478 1.21541 1.20344 1.60691 1.36785 1.01068 1.33038 1.21307 0.93679 0.89657 0.96260 0.94289 1.21816 0.99243 0.94583 1.00397 1.20446 0.94030 0.95100 1.01782 1.19433 0.94943 0.92098 0.97734 1.20322 0.96884 0.92506 1.07651 1.18825 0.94239 0.82043 0.98316 1.86022 1.33871 1.15786 1.87980 1.22987 0.86400 0.96220 1.00975 1.21107 0.96529 0.95903 1.09121 1.21037 0.98658 0.92630 0.97631 1.19923 0.92033 0.97017 1.00297 1.20540 0.99013 0.87345 1.03556 0.94472 0.93935 0.94583 0.94094 0.88320 0.93115 0.86228 0.91248 0.91924 0.90935 0.90646 0.85817 0.88621 0.92808 0.92852 0.85933 0.85729 0.90498 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.77 37.16 0.36 -2.49 16 2 C -0.13 -2.95 5.35 -26.73 -0.14 -3.09 16 3 C 0.22 5.30 2.04 -68.87 -0.14 5.16 16 4 H 0.00 0.08 7.36 -51.93 -0.38 -0.31 16 5 C -0.49 -13.04 7.52 -34.44 -0.26 -13.30 16 6 H 0.06 1.69 7.04 -52.49 -0.37 1.32 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.26 11.30 55.43 0.63 -24.64 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.68 -13.97 6.17 -100.93 -0.62 -14.59 16 14 C 0.10 1.86 2.52 -67.69 -0.17 1.69 16 15 H 0.04 0.79 7.32 -51.93 -0.38 0.41 16 16 C -0.12 -1.78 5.34 -26.70 -0.14 -1.92 16 17 C -0.08 -1.00 5.67 -28.05 -0.16 -1.16 16 18 C -0.04 -0.63 5.74 -104.63 -0.60 -1.23 16 19 C -0.15 -2.20 9.55 -39.29 -0.38 -2.58 16 20 C 0.11 1.56 6.68 -39.32 -0.26 1.29 16 21 O -0.32 -4.13 10.50 -19.41 -0.20 -4.33 16 22 C 0.03 0.25 9.82 101.05 0.99 1.25 16 23 C -0.21 -2.85 9.04 -39.53 -0.36 -3.21 16 24 C -0.08 -1.24 9.60 -39.46 -0.38 -1.62 16 25 C -0.09 -1.51 5.74 -104.57 -0.60 -2.11 16 26 C -0.07 -1.23 4.60 -28.05 -0.13 -1.36 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.61 6.37 -51.93 -0.33 0.28 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.10 2.58 5.96 -51.93 -0.31 2.27 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.32 5.96 5.89 -39.29 -0.23 5.73 16 34 H 0.07 1.00 8.10 -51.92 -0.42 0.58 16 35 H 0.06 0.83 7.94 -51.93 -0.41 0.42 16 36 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.12 1.55 8.05 -52.49 -0.42 1.12 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 41 H 0.05 0.42 7.68 -51.93 -0.40 0.02 16 42 H 0.12 1.38 6.33 -52.49 -0.33 1.04 16 43 H 0.12 1.78 8.05 -52.49 -0.42 1.36 16 44 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.09 1.92 6.69 -51.93 -0.35 1.57 16 LS Contribution 348.81 15.07 5.26 5.26 Total: -1.00 -28.74 348.81 -9.67 -38.42 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.25 Total: 6.94 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -2.46 Total: -23.28 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.00 Total: -39.23 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.20 Total: -4.33 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.74 -9.67 -38.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.535 kcal (2) G-P(sol) polarization free energy of solvation -28.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds