Wall clock time and date at job start Tue Mar 31 2020 05:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47368 * 2 1 4 4 H 1.09004 * 109.46816 * 55.41459 * 3 2 1 5 5 C 1.50701 * 109.47490 * 175.41320 * 3 2 1 6 6 H 1.08002 * 120.00406 * 119.99831 * 5 3 2 7 7 C 1.37881 * 119.99890 * 300.00315 * 5 3 2 8 8 N 1.31521 * 120.00200 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99949 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46980 * 60.00513 * 9 7 5 11 11 H 1.48505 * 109.46936 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47466 * 300.00229 * 9 7 5 13 13 N 1.46894 * 109.47426 * 295.41538 * 3 2 1 14 14 C 1.46893 * 111.00190 * 152.29436 * 13 3 2 15 15 H 1.08995 * 109.68474 * 327.54816 * 14 13 3 16 16 C 1.53331 * 109.71382 * 207.01300 * 14 13 3 17 17 C 1.52727 * 108.37573 * 170.35731 * 16 14 13 18 18 C 1.50639 * 110.59747 * 51.09906 * 17 16 14 19 19 C 1.38832 * 117.70366 * 162.45973 * 18 17 16 20 20 C 1.38430 * 120.50634 * 179.60646 * 19 18 17 21 21 O 1.35894 * 120.17263 * 180.02562 * 20 19 18 22 22 C 1.42906 * 116.99837 * 180.02562 * 21 20 19 23 23 C 1.38765 * 119.65069 * 359.82820 * 20 19 18 24 24 C 1.37834 * 119.71143 * 0.57901 * 23 20 19 25 25 C 1.37708 * 122.56172 * 342.29217 * 18 17 16 26 26 C 1.50648 * 122.54068 * 0.62041 * 25 18 17 27 27 H 1.08997 * 109.46869 * 178.30260 * 1 2 3 28 28 H 1.09000 * 109.46702 * 298.30148 * 1 2 3 29 29 H 1.08995 * 109.46916 * 58.29795 * 1 2 3 30 30 H 1.08999 * 109.47151 * 240.00335 * 2 1 3 31 31 H 1.09004 * 109.47452 * 120.00150 * 2 1 3 32 32 H 0.96991 * 120.00070 * 179.97438 * 8 7 5 33 33 H 1.00904 * 110.99935 * 28.33650 * 13 3 2 34 34 H 1.09009 * 109.68096 * 290.07319 * 16 14 13 35 35 H 1.09000 * 109.68449 * 50.63454 * 16 14 13 36 36 H 1.09007 * 109.25475 * 171.38566 * 17 16 14 37 37 H 1.08996 * 109.25326 * 290.81230 * 17 16 14 38 38 H 1.07993 * 119.75004 * 359.63719 * 19 18 17 39 39 H 1.09003 * 109.47021 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.47124 * 299.99726 * 22 21 20 41 41 H 1.09000 * 109.47144 * 59.99385 * 22 21 20 42 42 H 1.07998 * 120.14411 * 180.33838 * 23 20 19 43 43 H 1.07996 * 119.69062 * 179.69240 * 24 23 20 44 44 H 1.09005 * 109.25032 * 102.57133 * 26 25 18 45 45 H 1.09002 * 109.25225 * 221.99214 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6112 1.9795 0.8461 5 6 3.5428 1.4440 0.1136 6 1 4.1429 1.8904 -0.6655 7 6 4.1517 0.8754 1.2123 8 7 3.4210 0.3321 2.1614 9 14 6.0143 0.8767 1.3528 10 1 6.5098 2.2766 1.3526 11 1 6.4158 0.2103 2.6178 12 1 6.5983 0.1448 0.2002 13 7 1.6430 2.1023 -1.2509 14 6 1.5031 3.5521 -1.0599 15 1 1.1571 3.7573 -0.0470 16 6 0.4973 4.1124 -2.0726 17 6 0.1924 5.5611 -1.6971 18 6 1.4683 6.3407 -1.5135 19 6 1.3874 7.7264 -1.5395 20 6 2.5226 8.4999 -1.3686 21 8 2.4355 9.8558 -1.3948 22 6 3.6493 10.5875 -1.2118 23 6 3.7493 7.8835 -1.1663 24 6 3.8278 6.5075 -1.1494 25 6 2.6880 5.7312 -1.3209 26 6 2.8500 4.2338 -1.2914 27 1 -0.3633 -1.0272 -0.0304 28 1 -0.3633 0.4872 0.9048 29 1 -0.3633 0.5400 -0.8743 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8493 -0.0682 2.9340 33 1 0.7920 1.7019 -1.6166 34 1 0.9254 4.0751 -3.0744 35 1 -0.4201 3.5246 -2.0426 36 1 -0.3988 6.0209 -2.4891 37 1 -0.3768 5.5794 -0.7678 38 1 0.4315 8.2046 -1.6937 39 1 3.4392 11.6563 -1.2540 40 1 4.0798 10.3404 -0.2413 41 1 4.3548 10.3240 -1.9998 42 1 4.6391 8.4793 -1.0267 43 1 4.7835 6.0281 -0.9969 44 1 3.2640 3.8983 -2.2424 45 1 3.5334 3.9619 -0.4869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255149682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:10 Heat of formation + Delta-G solvation = -45.830315 kcal Electronic energy + Delta-G solvation = -23328.356809 eV Core-core repulsion = 20116.358070 eV Total energy + Delta-G solvation = -3211.998739 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.37522 -39.74192 -38.07468 -35.93265 -34.02019 -33.43102 -31.93811 -30.47100 -29.33676 -28.22224 -27.28296 -24.81121 -24.19404 -23.16519 -22.65862 -21.34424 -20.28807 -18.59392 -18.33071 -17.25552 -16.90328 -16.67557 -16.59183 -15.87069 -15.65243 -15.62710 -14.88664 -14.82782 -14.55502 -14.26530 -14.19464 -13.86168 -13.82176 -13.33391 -13.17187 -12.93751 -12.84242 -12.78639 -12.70215 -12.54593 -12.23950 -12.00720 -11.86079 -11.82616 -11.58329 -11.49373 -11.27959 -11.07135 -10.86343 -10.38247 -9.69748 -8.99872 -8.93258 -8.02643 -6.12417 0.37172 0.48268 1.41508 1.42411 1.49749 2.38282 2.45457 2.76570 3.22429 3.53229 3.74177 3.90052 3.99776 4.15251 4.23532 4.28508 4.36559 4.39595 4.42339 4.53663 4.59300 4.61682 4.65959 4.71475 4.73313 4.74084 4.79342 5.01486 5.05944 5.09478 5.12878 5.14283 5.25223 5.32402 5.38555 5.42042 5.43653 5.50167 5.66252 5.77840 5.81134 5.89991 5.96542 6.41971 6.47747 6.59275 7.00763 7.08215 7.55532 9.00589 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016394 B = 0.004540 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.565073 B = 6165.353206 C = 7570.406371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.228 3.772 4 H -0.034 1.034 5 C -0.500 4.500 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.922 5.922 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.683 5.683 14 C 0.101 3.899 15 H 0.014 0.986 16 C -0.112 4.112 17 C -0.073 4.073 18 C -0.046 4.046 19 C -0.161 4.161 20 C 0.110 3.890 21 O -0.333 6.333 22 C 0.019 3.981 23 C -0.208 4.208 24 C -0.094 4.094 25 C -0.118 4.118 26 C -0.055 4.055 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.258 0.742 33 H 0.331 0.669 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.122 0.878 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.147 0.853 43 H 0.123 0.877 44 H 0.068 0.932 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 15.923 -8.218 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C 0.119 3.881 4 H -0.017 1.017 5 C -0.539 4.539 6 H 0.073 0.927 7 C -0.189 4.189 8 N -0.563 5.563 9 Si 0.774 3.226 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.315 5.315 14 C -0.010 4.010 15 H 0.032 0.968 16 C -0.150 4.150 17 C -0.110 4.110 18 C -0.046 4.046 19 C -0.180 4.180 20 C 0.065 3.935 21 O -0.247 6.247 22 C -0.076 4.076 23 C -0.226 4.226 24 C -0.112 4.112 25 C -0.119 4.119 26 C -0.093 4.093 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.151 0.849 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.161 0.839 39 H 0.140 0.860 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.164 0.836 43 H 0.141 0.859 44 H 0.087 0.913 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.777 15.992 -8.311 18.415 hybrid contribution 0.856 -0.319 1.210 1.516 sum -2.921 15.674 -7.101 17.453 Atomic orbital electron populations 1.21752 0.96266 1.01204 1.00425 1.21623 0.94255 0.99171 1.01153 1.18962 0.94037 0.90435 0.84644 1.01697 1.21485 0.92718 1.35427 1.04265 0.92745 1.25640 1.01814 0.95690 0.95772 1.69997 1.36135 1.40050 1.10111 0.85771 0.81526 0.78131 0.77153 1.20112 1.21203 1.19808 1.60575 1.37636 1.02365 1.30924 1.21329 0.94942 0.88372 0.96323 0.96823 1.21733 0.98578 0.95671 0.98992 1.20495 0.93562 0.93883 1.03106 1.19625 0.94919 0.92850 0.97174 1.20550 0.97944 0.92150 1.07326 1.19005 0.94231 0.82958 0.97270 1.86019 1.36054 1.14947 1.87659 1.23317 0.85416 0.97193 1.01631 1.21315 0.97642 0.95276 1.08397 1.21142 0.98432 0.93568 0.98088 1.19830 0.93498 0.95663 1.02932 1.20289 0.98141 0.89366 1.01483 0.92368 0.94670 0.92200 0.94467 0.91593 0.93312 0.84899 0.90832 0.90106 0.87852 0.90160 0.83865 0.86029 0.92252 0.91896 0.83552 0.85860 0.91340 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 9.77 71.98 0.70 -4.45 16 2 C -0.12 -5.81 5.35 30.59 0.16 -5.65 16 3 C 0.23 11.39 2.04 44.17 0.09 11.48 16 4 H -0.03 -1.96 7.36 -2.39 -0.02 -1.97 16 5 C -0.50 -27.68 7.52 25.60 0.19 -27.49 16 6 H 0.05 3.04 7.04 -2.91 -0.02 3.02 16 7 C 0.01 0.47 5.29 84.65 0.45 0.92 16 8 N -0.92 -53.68 11.30 21.45 0.24 -53.44 16 9 Si 0.95 44.63 29.54 68.60 2.03 46.65 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 N -0.68 -28.24 6.17 -473.24 -2.92 -31.16 16 14 C 0.10 3.75 2.52 44.94 0.11 3.86 16 15 H 0.01 0.58 7.32 -2.39 -0.02 0.57 16 16 C -0.11 -3.07 5.34 30.61 0.16 -2.90 16 17 C -0.07 -1.77 5.67 29.74 0.17 -1.60 16 18 C -0.05 -1.31 5.74 -19.87 -0.11 -1.42 16 19 C -0.16 -4.25 9.55 22.46 0.21 -4.04 16 20 C 0.11 2.91 6.68 22.44 0.15 3.05 16 21 O -0.33 -7.66 10.50 -92.36 -0.97 -8.63 16 22 C 0.02 0.27 9.82 113.37 1.11 1.38 16 23 C -0.21 -5.43 9.04 22.30 0.20 -5.23 16 24 C -0.09 -2.89 9.60 22.35 0.21 -2.67 16 25 C -0.12 -3.93 5.74 -19.83 -0.11 -4.04 16 26 C -0.06 -2.10 4.60 29.74 0.14 -1.97 16 27 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.92 6.37 -2.39 -0.02 1.90 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 3.56 5.96 -2.38 -0.01 3.55 16 32 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.33 12.06 5.89 -89.69 -0.53 11.53 16 34 H 0.07 1.98 8.10 -2.38 -0.02 1.96 16 35 H 0.08 1.93 7.94 -2.39 -0.02 1.92 16 36 H 0.10 1.91 8.12 -2.38 -0.02 1.89 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.14 3.15 8.05 -2.91 -0.02 3.12 16 39 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 0.80 7.66 -2.39 -0.02 0.79 16 41 H 0.06 0.80 7.68 -2.39 -0.02 0.78 16 42 H 0.15 2.99 6.33 -2.91 -0.02 2.97 16 43 H 0.12 3.66 8.05 -2.91 -0.02 3.64 16 44 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 45 H 0.05 2.35 6.69 -2.39 -0.02 2.34 16 Total: -1.00 -64.26 348.81 2.67 -61.59 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.44 Total: 25.77 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 3.85 Total: -40.77 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -2.68 Total: -84.60 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.97 Total: -8.63 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.26 2.67 -61.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.756 kcal (2) G-P(sol) polarization free energy of solvation -64.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds