Wall clock time and date at job start Tue Mar 31 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47740 * 2 1 4 4 H 1.09000 * 109.46846 * 55.06723 * 3 2 1 5 5 C 1.50692 * 109.47371 * 175.06859 * 3 2 1 6 6 H 1.08003 * 120.00380 * 115.47979 * 5 3 2 7 7 C 1.37884 * 120.00257 * 295.47813 * 5 3 2 8 8 N 1.31509 * 119.99588 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00084 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47609 * 89.99713 * 9 7 5 11 11 H 1.48503 * 109.46985 * 209.99961 * 9 7 5 12 12 H 1.48501 * 109.46843 * 329.99711 * 9 7 5 13 13 N 1.46904 * 109.47100 * 295.07129 * 3 2 1 14 14 C 1.46896 * 110.99930 * 153.25869 * 13 3 2 15 15 C 1.50704 * 109.54648 * 305.47326 * 14 13 3 16 16 C 1.38237 * 119.99870 * 138.03137 * 15 14 13 17 17 C 1.38235 * 119.99543 * 179.74407 * 16 15 14 18 18 C 1.38238 * 119.99915 * 0.53075 * 17 16 15 19 19 C 1.38229 * 120.00287 * 359.74471 * 18 17 16 20 20 C 1.38236 * 120.00045 * 359.97438 * 19 18 17 21 21 C 1.53176 * 109.54502 * 185.29470 * 14 13 3 22 22 C 1.53279 * 109.06269 * 297.03225 * 21 14 13 23 23 O 1.42898 * 109.46443 * 302.44490 * 22 21 14 24 24 C 1.42909 * 114.09954 * 61.15141 * 23 22 21 25 25 C 1.53088 * 109.41688 * 298.85050 * 24 23 22 26 26 H 1.09002 * 109.46747 * 60.17988 * 1 2 3 27 27 H 1.08996 * 109.47542 * 180.18695 * 1 2 3 28 28 H 1.09004 * 109.46495 * 300.18314 * 1 2 3 29 29 H 1.09005 * 109.47170 * 239.99866 * 2 1 3 30 30 H 1.09004 * 109.47187 * 120.00878 * 2 1 3 31 31 H 0.97000 * 119.99766 * 179.97438 * 8 7 5 32 32 H 1.00904 * 110.99565 * 29.30698 * 13 3 2 33 33 H 1.07997 * 119.99946 * 359.97438 * 16 15 14 34 34 H 1.08001 * 119.99933 * 180.29807 * 17 16 15 35 35 H 1.08000 * 119.99838 * 179.76713 * 18 17 16 36 36 H 1.07999 * 120.00201 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.00166 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.52201 * 57.02007 * 21 14 13 39 39 H 1.08993 * 109.52360 * 177.21151 * 21 14 13 40 40 H 1.09000 * 109.45727 * 182.44669 * 22 21 14 41 41 H 1.09009 * 109.46913 * 62.44820 * 22 21 14 42 42 H 1.09005 * 109.47951 * 178.86057 * 24 23 22 43 43 H 1.08996 * 109.48091 * 58.83610 * 24 23 22 44 44 H 1.08998 * 109.52087 * 297.69859 * 25 24 23 45 45 H 1.08993 * 109.57570 * 177.54333 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6065 1.9811 0.8425 5 6 3.5421 1.4441 0.1221 6 1 4.1493 1.8227 -0.6868 7 6 4.1413 0.9623 1.2667 8 7 3.4020 0.5018 2.2520 9 14 6.0031 0.9650 1.4183 10 1 6.4488 2.2462 2.0225 11 1 6.4311 -0.1648 2.2819 12 1 6.6096 0.8157 0.0711 13 7 1.6501 2.0998 -1.2545 14 6 1.5315 3.5526 -1.0728 15 6 0.5847 3.8430 0.0631 16 6 0.8858 4.8352 0.9774 17 6 0.0148 5.1051 2.0163 18 6 -1.1521 4.3755 2.1472 19 6 -1.4504 3.3795 1.2363 20 6 -0.5822 3.1135 0.1940 21 6 0.9975 4.1882 -2.3601 22 6 2.0064 3.9538 -3.4900 23 8 3.2733 4.5001 -3.1180 24 6 3.8418 3.9106 -1.9468 25 6 2.9087 4.1435 -0.7557 26 1 -0.3633 0.5111 -0.8916 27 1 -0.3634 -1.0276 0.0034 28 1 -0.3632 0.5167 0.8884 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5140 0.8899 31 1 3.8235 0.1625 3.0570 32 1 0.7927 1.7093 -1.6159 33 1 1.7997 5.4019 0.8778 34 1 0.2476 5.8835 2.7278 35 1 -1.8308 4.5839 2.9611 36 1 -2.3618 2.8092 1.3388 37 1 -0.8151 2.3351 -0.5175 38 1 0.0422 3.7333 -2.6218 39 1 0.8628 5.2591 -2.2089 40 1 1.6533 4.4409 -4.3989 41 1 2.1103 2.8834 -3.6681 42 1 4.8109 4.3666 -1.7442 43 1 3.9698 2.8397 -2.1044 44 1 2.8125 5.2136 -0.5722 45 1 3.3185 3.6575 0.1296 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255153271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:22 Heat of formation + Delta-G solvation = -33.683065 kcal Electronic energy + Delta-G solvation = -25264.198673 eV Core-core repulsion = 22052.726678 eV Total energy + Delta-G solvation = -3211.471995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.52287 -39.26347 -37.62102 -35.27459 -33.75814 -32.25910 -31.49494 -31.11475 -30.48697 -28.28453 -25.35348 -24.88012 -24.45281 -22.99867 -22.38454 -21.34828 -19.97800 -18.46064 -17.96308 -16.97598 -16.83854 -16.54653 -16.19526 -15.91033 -15.74686 -15.34316 -15.14484 -14.79165 -14.54652 -14.10264 -14.09360 -13.85576 -13.39300 -13.33237 -13.07605 -12.91392 -12.81422 -12.66801 -12.51135 -12.20965 -12.10834 -11.94660 -11.80151 -11.48565 -11.44478 -11.10852 -11.07797 -10.77088 -10.40365 -10.28546 -9.70630 -9.41637 -8.92193 -7.98279 -6.02515 0.57053 0.59469 1.40177 1.43976 1.51183 2.47859 2.97263 3.15491 3.30202 3.58266 3.85896 3.97708 4.08268 4.20582 4.25961 4.29945 4.31948 4.53532 4.55548 4.59679 4.65148 4.68312 4.75034 4.81435 4.86174 4.88890 4.99880 5.09195 5.15827 5.19529 5.23915 5.26371 5.36162 5.38354 5.44078 5.54165 5.65478 5.68100 5.69703 5.81366 5.89260 5.96320 6.22247 6.45364 6.47801 6.61887 7.05810 7.11936 7.62237 9.06241 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.008521 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.732542 B = 3285.085733 C = 4178.757540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.229 3.771 4 H -0.007 1.007 5 C -0.490 4.490 6 H 0.066 0.934 7 C 0.011 3.989 8 N -0.921 5.921 9 Si 0.933 3.067 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.269 1.269 13 N -0.666 5.666 14 C 0.162 3.838 15 C -0.096 4.096 16 C -0.135 4.135 17 C -0.130 4.130 18 C -0.135 4.135 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.131 4.131 22 C 0.069 3.931 23 O -0.403 6.403 24 C 0.075 3.925 25 C -0.135 4.135 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.034 0.966 30 H 0.053 0.947 31 H 0.253 0.747 32 H 0.326 0.674 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 7.239 -5.641 12.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.121 3.879 4 H 0.011 0.989 5 C -0.528 4.528 6 H 0.084 0.916 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.761 3.239 10 H -0.208 1.208 11 H -0.219 1.219 12 H -0.194 1.194 13 N -0.297 5.297 14 C 0.070 3.930 15 C -0.098 4.098 16 C -0.154 4.154 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.145 4.145 20 C -0.142 4.142 21 C -0.169 4.169 22 C -0.007 4.007 23 O -0.322 6.322 24 C -0.002 4.002 25 C -0.173 4.173 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.058 7.317 -5.836 12.350 hybrid contribution 0.331 -0.529 1.465 1.592 sum -7.727 6.788 -4.372 11.176 Atomic orbital electron populations 1.21838 0.96536 1.00797 1.00321 1.21573 0.94095 0.99836 1.00252 1.18895 0.93776 0.89712 0.85528 0.98906 1.21665 0.92870 1.37855 1.00460 0.91614 1.25523 1.00617 0.96281 0.96225 1.70042 1.35623 1.43933 1.06597 0.85932 0.82979 0.77125 0.77883 1.20762 1.21941 1.19366 1.60866 1.36444 1.01288 1.31138 1.19782 0.92362 0.89300 0.91561 1.20759 0.95671 0.95603 0.97742 1.21330 0.99683 0.98755 0.95633 1.21381 0.94840 1.00527 0.98034 1.21367 0.97691 0.96517 0.99760 1.21340 1.00065 0.98163 0.94955 1.21136 0.94388 0.99329 0.99388 1.22227 0.99476 1.00879 0.94284 1.22584 0.82600 0.98998 0.96557 1.87776 1.35713 1.63498 1.45243 1.22459 0.95354 0.98253 0.84095 1.22236 0.95609 0.99221 1.00218 0.92269 0.92980 0.94365 0.94670 0.92858 0.93784 0.85498 0.86274 0.84765 0.84150 0.84498 0.85995 0.89940 0.91073 0.87496 0.92774 0.89947 0.92565 0.92001 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 8.60 71.98 0.62 -4.25 16 2 C -0.12 -5.30 5.38 30.59 0.16 -5.14 16 3 C 0.23 10.46 1.22 44.17 0.05 10.51 16 4 H -0.01 -0.34 5.87 -2.39 -0.01 -0.36 16 5 C -0.49 -25.07 6.14 25.60 0.16 -24.91 16 6 H 0.07 3.35 4.91 -2.91 -0.01 3.33 16 7 C 0.01 0.60 5.30 84.66 0.45 1.04 16 8 N -0.92 -52.30 11.65 21.45 0.25 -52.05 16 9 Si 0.93 43.45 29.54 68.60 2.03 45.47 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 N -0.67 -24.97 4.58 -455.20 -2.09 -27.06 16 14 C 0.16 5.54 0.42 2.90 0.00 5.54 16 15 C -0.10 -3.32 3.19 -19.86 -0.06 -3.38 16 16 C -0.14 -4.64 9.11 22.27 0.20 -4.43 16 17 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 18 C -0.14 -3.79 10.05 22.27 0.22 -3.57 16 19 C -0.13 -3.69 10.05 22.27 0.22 -3.46 16 20 C -0.12 -3.98 7.34 22.27 0.16 -3.81 16 21 C -0.13 -3.67 4.99 30.75 0.15 -3.51 16 22 C 0.07 1.94 6.68 72.08 0.48 2.42 16 23 O -0.40 -13.56 10.77 -148.98 -1.60 -15.16 16 24 C 0.07 2.71 6.14 72.01 0.44 3.15 16 25 C -0.14 -5.03 3.39 30.68 0.10 -4.93 16 26 H 0.06 1.79 5.22 -2.39 -0.01 1.78 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.41 7.47 -2.38 -0.02 1.39 16 29 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.05 2.78 6.34 -2.38 -0.02 2.77 16 31 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.33 11.07 5.36 -89.69 -0.48 10.59 16 33 H 0.12 3.99 5.90 -2.91 -0.02 3.97 16 34 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 37 H 0.12 3.64 4.94 -2.91 -0.01 3.63 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.05 1.61 7.75 -2.38 -0.02 1.59 16 42 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 43 H 0.06 2.29 5.81 -2.39 -0.01 2.28 16 44 H 0.06 2.13 6.56 -2.39 -0.02 2.11 16 45 H 0.07 3.37 5.62 -2.39 -0.01 3.36 16 Total: -1.00 -59.14 328.99 2.70 -56.44 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: 0.52 Total: 34.78 kcal Atomic # 6 Polarization: -46.03 SS G_CDS: 3.60 Total: -42.43 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -1.84 Total: -79.10 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -1.60 Total: -15.16 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -59.14 2.70 -56.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.752 kcal (2) G-P(sol) polarization free energy of solvation -59.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds