Wall clock time and date at job start Tue Mar 31 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46878 * 2 1 4 4 H 1.08997 * 109.47567 * 304.16010 * 3 2 1 5 5 C 1.50702 * 109.47200 * 184.15925 * 3 2 1 6 6 H 1.08000 * 120.00035 * 242.69329 * 5 3 2 7 7 C 1.37880 * 119.99770 * 62.68554 * 5 3 2 8 8 N 1.31512 * 120.00054 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99892 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47424 * 90.00098 * 9 7 5 11 11 H 1.48500 * 109.46948 * 210.00397 * 9 7 5 12 12 H 1.48503 * 109.46835 * 330.00041 * 9 7 5 13 13 N 1.46903 * 109.46990 * 64.16437 * 3 2 1 14 14 C 1.46906 * 110.99939 * 208.78832 * 13 3 2 15 15 C 1.50703 * 109.61135 * 54.86912 * 14 13 3 16 16 C 1.38238 * 119.99291 * 220.69312 * 15 14 13 17 17 C 1.38237 * 119.99305 * 179.79013 * 16 15 14 18 18 C 1.38229 * 120.00389 * 0.44191 * 17 16 15 19 19 C 1.38243 * 120.00045 * 359.80974 * 18 17 16 20 20 C 1.38226 * 120.00454 * 40.96821 * 15 14 13 21 21 C 1.53176 * 109.54367 * 294.64809 * 14 13 3 22 22 C 1.53098 * 109.21182 * 297.08164 * 21 14 13 23 23 O 1.42906 * 109.41291 * 302.48879 * 22 21 14 24 24 C 1.42905 * 114.15136 * 61.05779 * 23 22 21 25 25 C 1.53083 * 109.41964 * 298.87621 * 24 23 22 26 26 H 1.09001 * 109.46936 * 178.99357 * 1 2 3 27 27 H 1.09001 * 109.47193 * 298.99750 * 1 2 3 28 28 H 1.09004 * 109.47063 * 59.00087 * 1 2 3 29 29 H 1.08998 * 109.47320 * 240.00314 * 2 1 3 30 30 H 1.08996 * 109.47058 * 119.99679 * 2 1 3 31 31 H 0.96995 * 120.00267 * 179.97438 * 8 7 5 32 32 H 1.00894 * 111.00317 * 84.83336 * 13 3 2 33 33 H 1.08003 * 120.00383 * 359.97438 * 16 15 14 34 34 H 1.08008 * 119.99947 * 180.27419 * 17 16 15 35 35 H 1.08002 * 120.00415 * 179.83603 * 18 17 16 36 36 H 1.07992 * 119.99953 * 179.97438 * 19 18 17 37 37 H 1.08004 * 120.00001 * 359.97438 * 20 15 14 38 38 H 1.09002 * 109.52440 * 57.01350 * 21 14 13 39 39 H 1.08994 * 109.52617 * 177.14358 * 21 14 13 40 40 H 1.08998 * 109.48236 * 62.40539 * 22 21 14 41 41 H 1.09001 * 109.47798 * 182.43877 * 22 21 14 42 42 H 1.09003 * 109.47795 * 178.89287 * 24 23 22 43 43 H 1.09003 * 109.48624 * 58.86984 * 24 23 22 44 44 H 1.09007 * 109.52658 * 297.70573 * 25 24 23 45 45 H 1.09003 * 109.57910 * 177.54684 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6170 1.9775 -0.8503 5 6 3.5434 1.4439 -0.1031 6 1 4.1393 1.8532 0.6993 7 6 4.1582 0.9223 -1.2216 8 7 3.4325 0.4233 -2.1983 9 14 6.0219 0.9233 -1.3491 10 1 6.5582 -0.3356 -0.7724 11 1 6.4203 1.0234 -2.7761 12 1 6.5686 2.0832 -0.6000 13 7 1.6341 2.1054 1.2466 14 6 1.4704 3.5513 1.0449 15 6 0.5052 3.7983 -0.0858 16 6 0.7558 4.8034 -1.0012 17 6 -0.1273 5.0271 -2.0409 18 6 -1.2655 4.2518 -2.1599 19 6 -1.5187 3.2501 -1.2415 20 6 -0.6334 3.0236 -0.2043 21 6 2.8266 4.1782 0.7072 22 6 3.7769 3.9922 1.8930 23 8 3.2002 4.5804 3.0607 24 6 1.9533 4.0020 3.4518 25 6 0.9305 4.1898 2.3283 26 1 -0.3633 -1.0275 -0.0181 27 1 -0.3633 0.4982 0.8988 28 1 -0.3633 0.5293 -0.8809 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8650 0.0568 -2.9854 32 1 2.2919 1.9158 1.9877 33 1 1.6430 5.4119 -0.9058 34 1 0.0706 5.8095 -2.7587 35 1 -1.9569 4.4283 -2.9707 36 1 -2.4082 2.6447 -1.3343 37 1 -0.8312 2.2409 0.5132 38 1 3.2440 3.6908 -0.1740 39 1 2.6967 5.2419 0.5079 40 1 3.9392 2.9283 2.0654 41 1 4.7296 4.4746 1.6744 42 1 1.5933 4.4917 4.3566 43 1 2.0906 2.9380 3.6444 44 1 0.7624 5.2540 2.1628 45 1 -0.0088 3.7115 2.6058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255153276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:24 Heat of formation + Delta-G solvation = -21.006733 kcal Electronic energy + Delta-G solvation = -25261.232864 eV Core-core repulsion = 22050.310556 eV Total energy + Delta-G solvation = -3210.922308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.19458 -38.08664 -35.94241 -33.70149 -31.76207 -30.94432 -30.14864 -30.02522 -28.95622 -26.24872 -24.16490 -23.41510 -22.79921 -21.71221 -21.10206 -19.64520 -18.30826 -16.99541 -16.41668 -15.79854 -15.48411 -15.00107 -14.60712 -14.51577 -14.16187 -13.90164 -13.61458 -13.24326 -13.11260 -12.80683 -12.52943 -12.24923 -12.01842 -11.79068 -11.63582 -11.26993 -11.13234 -10.94062 -10.87849 -10.73194 -10.61304 -10.50877 -10.27786 -10.15942 -9.89297 -9.58749 -9.40696 -9.09054 -8.89826 -8.42989 -8.35026 -8.01347 -7.33182 -6.02839 -4.12636 1.89410 1.95894 3.23576 3.31588 3.33078 4.28801 4.31928 4.36103 5.03028 5.10519 5.23502 5.31328 5.42166 5.47399 5.51435 5.56578 5.60123 5.70763 5.79205 6.00016 6.07279 6.10720 6.12468 6.20234 6.29013 6.37926 6.43959 6.49904 6.51081 6.60990 6.63670 6.69247 6.96100 6.97609 7.01712 7.12581 7.17329 7.22919 7.43452 7.54235 7.60073 7.64316 7.75715 8.03587 8.11150 8.28312 8.61950 8.97894 9.52662 10.98563 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011947 B = 0.008455 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.091770 B = 3310.744038 C = 4235.318379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C 0.213 3.787 4 H 0.047 0.953 5 C -0.545 4.545 6 H 0.060 0.940 7 C 0.070 3.930 8 N -0.880 5.880 9 Si 0.880 3.120 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.678 5.678 14 C 0.163 3.837 15 C -0.047 4.047 16 C -0.119 4.119 17 C -0.127 4.127 18 C -0.131 4.131 19 C -0.130 4.130 20 C -0.090 4.090 21 C -0.183 4.183 22 C 0.060 3.940 23 O -0.394 6.394 24 C 0.062 3.938 25 C -0.136 4.136 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.028 0.972 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.134 0.866 38 H 0.111 0.889 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 6.673 4.782 10.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C 0.105 3.895 4 H 0.064 0.936 5 C -0.584 4.584 6 H 0.078 0.922 7 C -0.133 4.133 8 N -0.518 5.518 9 Si 0.708 3.292 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.309 5.309 14 C 0.071 3.929 15 C -0.047 4.047 16 C -0.137 4.137 17 C -0.146 4.146 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.108 4.108 21 C -0.222 4.222 22 C -0.016 4.016 23 O -0.313 6.313 24 C -0.015 4.015 25 C -0.174 4.174 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.129 0.871 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.140 6.577 4.608 10.746 hybrid contribution 1.988 -0.086 -0.650 2.094 sum -5.152 6.491 3.958 9.184 Atomic orbital electron populations 1.21866 0.99200 0.98288 1.00324 1.21459 0.92045 0.99494 1.01160 1.19227 0.92715 0.90870 0.86688 0.93558 1.21959 0.92656 1.40197 1.03608 0.92245 1.24902 0.97461 0.95083 0.95870 1.69898 1.34756 1.39649 1.07488 0.86786 0.86664 0.78450 0.77269 1.20740 1.21315 1.19963 1.61067 1.53274 1.05651 1.10870 1.19571 0.91772 0.90199 0.91361 1.19631 0.94879 0.94683 0.95518 1.21134 0.99163 0.98529 0.94886 1.20972 0.95163 1.00134 0.98284 1.20986 0.97769 0.96951 0.99212 1.21074 0.99690 0.98203 0.95829 1.21233 0.93255 0.98264 0.98079 1.23057 0.97163 1.00704 1.01320 1.22708 0.95890 0.98571 0.84437 1.87834 1.36222 1.61584 1.45674 1.22515 0.84192 0.98185 0.96566 1.22211 0.99321 1.00618 0.95280 0.95888 0.93231 0.94026 0.89824 0.95294 0.92957 0.85246 0.86287 0.86977 0.87115 0.86906 0.84843 0.87092 0.92593 0.91885 0.89780 0.89763 0.92803 0.91665 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.47 37.16 0.31 -2.41 16 2 C -0.10 -2.34 5.47 -26.73 -0.15 -2.49 16 3 C 0.21 4.79 1.12 -68.86 -0.08 4.72 16 4 H 0.05 1.19 5.92 -51.93 -0.31 0.88 16 5 C -0.55 -13.40 6.07 -34.44 -0.21 -13.61 16 6 H 0.06 1.42 4.87 -52.49 -0.26 1.17 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 8 N -0.88 -24.04 11.50 55.43 0.64 -23.41 16 9 Si 0.88 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 13 N -0.68 -12.83 4.68 -95.22 -0.45 -13.28 16 14 C 0.16 2.83 0.51 -132.56 -0.07 2.76 16 15 C -0.05 -0.83 3.19 -104.62 -0.33 -1.17 16 16 C -0.12 -2.05 9.12 -39.58 -0.36 -2.41 16 17 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 18 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 19 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 20 C -0.09 -1.56 7.03 -39.59 -0.28 -1.84 16 21 C -0.18 -3.32 3.44 -26.59 -0.09 -3.41 16 22 C 0.06 1.05 6.09 37.21 0.23 1.27 16 23 O -0.39 -6.60 10.76 -35.23 -0.38 -6.98 16 24 C 0.06 0.90 6.58 37.20 0.24 1.15 16 25 C -0.14 -2.04 5.09 -26.60 -0.14 -2.18 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.90 6.27 -51.93 -0.33 0.58 16 28 H 0.04 0.83 7.18 -51.93 -0.37 0.46 16 29 H 0.08 2.16 6.19 -51.93 -0.32 1.84 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.33 6.30 5.07 -39.29 -0.20 6.10 16 33 H 0.12 1.95 5.90 -52.48 -0.31 1.64 16 34 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 35 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.13 2.31 5.28 -52.48 -0.28 2.03 16 38 H 0.11 2.37 5.74 -51.93 -0.30 2.07 16 39 H 0.06 0.95 6.52 -51.93 -0.34 0.61 16 40 H 0.06 1.17 4.82 -51.93 -0.25 0.92 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.78 6.85 -51.93 -0.36 0.43 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -26.38 327.37 -9.03 -35.40 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -6.55 Total: 13.11 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -2.20 Total: -25.15 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.19 Total: -36.69 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.38 Total: -6.98 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.38 -9.03 -35.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.396 kcal (2) G-P(sol) polarization free energy of solvation -26.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds