Wall clock time and date at job start Tue Mar 31 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46878 * 2 1 4 4 H 1.08997 * 109.47567 * 304.16010 * 3 2 1 5 5 C 1.50702 * 109.47200 * 184.15925 * 3 2 1 6 6 H 1.08000 * 120.00035 * 242.69329 * 5 3 2 7 7 C 1.37880 * 119.99770 * 62.68554 * 5 3 2 8 8 N 1.31512 * 120.00054 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99892 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47424 * 90.00098 * 9 7 5 11 11 H 1.48500 * 109.46948 * 210.00397 * 9 7 5 12 12 H 1.48503 * 109.46835 * 330.00041 * 9 7 5 13 13 N 1.46903 * 109.46990 * 64.16437 * 3 2 1 14 14 C 1.46906 * 110.99939 * 208.78832 * 13 3 2 15 15 C 1.50703 * 109.61135 * 54.86912 * 14 13 3 16 16 C 1.38238 * 119.99291 * 220.69312 * 15 14 13 17 17 C 1.38237 * 119.99305 * 179.79013 * 16 15 14 18 18 C 1.38229 * 120.00389 * 0.44191 * 17 16 15 19 19 C 1.38243 * 120.00045 * 359.80974 * 18 17 16 20 20 C 1.38226 * 120.00454 * 40.96821 * 15 14 13 21 21 C 1.53176 * 109.54367 * 294.64809 * 14 13 3 22 22 C 1.53098 * 109.21182 * 297.08164 * 21 14 13 23 23 O 1.42906 * 109.41291 * 302.48879 * 22 21 14 24 24 C 1.42905 * 114.15136 * 61.05779 * 23 22 21 25 25 C 1.53083 * 109.41964 * 298.87621 * 24 23 22 26 26 H 1.09001 * 109.46936 * 178.99357 * 1 2 3 27 27 H 1.09001 * 109.47193 * 298.99750 * 1 2 3 28 28 H 1.09004 * 109.47063 * 59.00087 * 1 2 3 29 29 H 1.08998 * 109.47320 * 240.00314 * 2 1 3 30 30 H 1.08996 * 109.47058 * 119.99679 * 2 1 3 31 31 H 0.96995 * 120.00267 * 179.97438 * 8 7 5 32 32 H 1.00894 * 111.00317 * 84.83336 * 13 3 2 33 33 H 1.08003 * 120.00383 * 359.97438 * 16 15 14 34 34 H 1.08008 * 119.99947 * 180.27419 * 17 16 15 35 35 H 1.08002 * 120.00415 * 179.83603 * 18 17 16 36 36 H 1.07992 * 119.99953 * 179.97438 * 19 18 17 37 37 H 1.08004 * 120.00001 * 359.97438 * 20 15 14 38 38 H 1.09002 * 109.52440 * 57.01350 * 21 14 13 39 39 H 1.08994 * 109.52617 * 177.14358 * 21 14 13 40 40 H 1.08998 * 109.48236 * 62.40539 * 22 21 14 41 41 H 1.09001 * 109.47798 * 182.43877 * 22 21 14 42 42 H 1.09003 * 109.47795 * 178.89287 * 24 23 22 43 43 H 1.09003 * 109.48624 * 58.86984 * 24 23 22 44 44 H 1.09007 * 109.52658 * 297.70573 * 25 24 23 45 45 H 1.09003 * 109.57910 * 177.54684 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6170 1.9775 -0.8503 5 6 3.5434 1.4439 -0.1031 6 1 4.1393 1.8532 0.6993 7 6 4.1582 0.9223 -1.2216 8 7 3.4325 0.4233 -2.1983 9 14 6.0219 0.9233 -1.3491 10 1 6.5582 -0.3356 -0.7724 11 1 6.4203 1.0234 -2.7761 12 1 6.5686 2.0832 -0.6000 13 7 1.6341 2.1054 1.2466 14 6 1.4704 3.5513 1.0449 15 6 0.5052 3.7983 -0.0858 16 6 0.7558 4.8034 -1.0012 17 6 -0.1273 5.0271 -2.0409 18 6 -1.2655 4.2518 -2.1599 19 6 -1.5187 3.2501 -1.2415 20 6 -0.6334 3.0236 -0.2043 21 6 2.8266 4.1782 0.7072 22 6 3.7769 3.9922 1.8930 23 8 3.2002 4.5804 3.0607 24 6 1.9533 4.0020 3.4518 25 6 0.9305 4.1898 2.3283 26 1 -0.3633 -1.0275 -0.0181 27 1 -0.3633 0.4982 0.8988 28 1 -0.3633 0.5293 -0.8809 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8650 0.0568 -2.9854 32 1 2.2919 1.9158 1.9877 33 1 1.6430 5.4119 -0.9058 34 1 0.0706 5.8095 -2.7587 35 1 -1.9569 4.4283 -2.9707 36 1 -2.4082 2.6447 -1.3343 37 1 -0.8312 2.2409 0.5132 38 1 3.2440 3.6908 -0.1740 39 1 2.6967 5.2419 0.5079 40 1 3.9392 2.9283 2.0654 41 1 4.7296 4.4746 1.6744 42 1 1.5933 4.4917 4.3566 43 1 2.0906 2.9380 3.6444 44 1 0.7624 5.2540 2.1628 45 1 -0.0088 3.7115 2.6058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255153276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:24 Heat of formation + Delta-G solvation = -34.881050 kcal Electronic energy + Delta-G solvation = -25261.834500 eV Core-core repulsion = 22050.310556 eV Total energy + Delta-G solvation = -3211.523943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56778 -39.35290 -37.50570 -35.29604 -33.59416 -32.28610 -31.49483 -31.35465 -30.41727 -28.04606 -25.51455 -24.83069 -24.48615 -22.99005 -22.39310 -21.38137 -19.70878 -18.75628 -17.85280 -17.14560 -16.90000 -16.55944 -16.21257 -15.85253 -15.48552 -15.26292 -15.24053 -14.81572 -14.47897 -14.33256 -13.94672 -13.64704 -13.35772 -13.27512 -13.13867 -12.99135 -12.86657 -12.58871 -12.47529 -12.26763 -12.00929 -11.96889 -11.80076 -11.68610 -11.41078 -11.29054 -11.03123 -10.74737 -10.38259 -10.31240 -9.62232 -9.35090 -8.98037 -7.99371 -6.14294 0.62969 0.69137 1.36779 1.40916 1.46315 2.42829 3.01441 3.04784 3.23875 3.59049 3.80956 4.02610 4.15599 4.20890 4.25814 4.27855 4.33685 4.43861 4.52649 4.63295 4.72496 4.80436 4.82711 4.84709 4.88721 4.90797 4.99307 4.99900 5.18318 5.25142 5.30275 5.31479 5.36592 5.45559 5.50935 5.63275 5.70989 5.72457 5.77472 5.84057 5.97027 6.18658 6.25719 6.31579 6.33208 6.47607 6.91347 7.10945 7.53631 8.98829 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011947 B = 0.008455 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.091770 B = 3310.744038 C = 4235.318379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C 0.227 3.773 4 H 0.018 0.982 5 C -0.541 4.541 6 H 0.063 0.937 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.931 3.069 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.267 1.267 13 N -0.666 5.666 14 C 0.162 3.838 15 C -0.065 4.065 16 C -0.139 4.139 17 C -0.134 4.134 18 C -0.134 4.134 19 C -0.136 4.136 20 C -0.104 4.104 21 C -0.176 4.176 22 C 0.066 3.934 23 O -0.399 6.399 24 C 0.059 3.941 25 C -0.128 4.128 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.049 0.951 30 H 0.024 0.976 31 H 0.256 0.744 32 H 0.329 0.671 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.514 7.600 5.789 12.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 C 0.119 3.881 4 H 0.035 0.965 5 C -0.580 4.580 6 H 0.081 0.919 7 C -0.176 4.176 8 N -0.551 5.551 9 Si 0.758 3.242 10 H -0.208 1.208 11 H -0.219 1.219 12 H -0.192 1.192 13 N -0.296 5.296 14 C 0.070 3.930 15 C -0.066 4.066 16 C -0.157 4.157 17 C -0.152 4.152 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.122 4.122 21 C -0.215 4.215 22 C -0.011 4.011 23 O -0.318 6.318 24 C -0.018 4.018 25 C -0.166 4.166 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.132 0.868 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.085 7.518 5.640 12.397 hybrid contribution 2.234 -0.329 -0.958 2.453 sum -5.851 7.188 4.682 10.384 Atomic orbital electron populations 1.21700 0.96556 0.99302 1.00629 1.21340 0.94402 0.99062 0.99202 1.18882 0.91327 0.90713 0.87195 0.96459 1.22321 0.94058 1.38481 1.03145 0.91866 1.25510 1.00631 0.95478 0.96028 1.70030 1.35868 1.41207 1.07951 0.85978 0.82990 0.78430 0.76776 1.20794 1.21887 1.19165 1.60980 1.52602 1.06885 1.09114 1.19656 0.91512 0.88956 0.92850 1.19764 0.95342 0.95392 0.96053 1.21297 0.99775 0.98957 0.95659 1.21307 0.95018 1.00701 0.98140 1.21359 0.97941 0.96221 0.99637 1.21399 1.00130 0.98498 0.95343 1.21285 0.93665 0.98385 0.98828 1.22907 0.97650 1.00856 1.00097 1.22570 0.96104 0.97805 0.84574 1.87835 1.37229 1.61694 1.45023 1.22722 0.83111 0.98574 0.97355 1.22150 0.99768 1.00684 0.93973 0.94459 0.91749 0.94812 0.93226 0.95693 0.93488 0.85256 0.86340 0.84784 0.84269 0.84760 0.85165 0.90675 0.91713 0.93284 0.89251 0.86781 0.92857 0.91161 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.76 8.47 71.98 0.61 -4.15 16 2 C -0.10 -4.64 5.47 30.59 0.17 -4.48 16 3 C 0.23 10.38 1.12 44.17 0.05 10.43 16 4 H 0.02 0.92 5.92 -2.39 -0.01 0.90 16 5 C -0.54 -26.95 6.07 25.60 0.16 -26.80 16 6 H 0.06 3.05 4.87 -2.91 -0.01 3.03 16 7 C 0.02 1.22 5.30 84.66 0.45 1.67 16 8 N -0.91 -51.17 11.50 21.45 0.25 -50.92 16 9 Si 0.93 42.46 29.54 68.60 2.03 44.48 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 N -0.67 -24.90 4.68 -455.17 -2.13 -27.03 16 14 C 0.16 5.50 0.51 2.90 0.00 5.50 16 15 C -0.07 -2.29 3.19 -19.87 -0.06 -2.35 16 16 C -0.14 -4.72 9.12 22.27 0.20 -4.51 16 17 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 18 C -0.13 -3.80 10.05 22.27 0.22 -3.58 16 19 C -0.14 -4.08 10.05 22.27 0.22 -3.86 16 20 C -0.10 -3.48 7.03 22.27 0.16 -3.33 16 21 C -0.18 -6.33 3.44 30.69 0.11 -6.22 16 22 C 0.07 2.24 6.09 72.01 0.44 2.68 16 23 O -0.40 -12.59 10.76 -148.98 -1.60 -14.20 16 24 C 0.06 1.56 6.58 72.01 0.47 2.03 16 25 C -0.13 -3.58 5.09 30.68 0.16 -3.42 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 2.25 6.27 -2.39 -0.01 2.24 16 28 H 0.03 1.32 7.18 -2.38 -0.02 1.30 16 29 H 0.05 2.63 6.19 -2.39 -0.01 2.61 16 30 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 32 H 0.33 12.38 5.07 -89.70 -0.46 11.92 16 33 H 0.12 3.90 5.90 -2.91 -0.02 3.88 16 34 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 37 H 0.13 4.36 5.28 -2.91 -0.02 4.34 16 38 H 0.07 3.27 5.74 -2.39 -0.01 3.26 16 39 H 0.06 2.18 6.52 -2.39 -0.02 2.16 16 40 H 0.05 1.80 4.82 -2.39 -0.01 1.79 16 41 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.05 1.43 6.85 -2.39 -0.02 1.42 16 44 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 45 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -56.87 327.37 2.66 -54.22 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: 0.54 Total: 37.65 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 3.57 Total: -44.21 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -1.88 Total: -77.95 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -1.60 Total: -14.20 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -56.87 2.66 -54.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.335 kcal (2) G-P(sol) polarization free energy of solvation -56.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds