Wall clock time and date at job start Tue Mar 31 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47280 * 2 1 4 4 H 1.09003 * 109.46961 * 54.36813 * 3 2 1 5 5 C 1.50695 * 109.47414 * 174.36425 * 3 2 1 6 6 H 1.08000 * 120.00030 * 120.00202 * 5 3 2 7 7 C 1.37882 * 120.00647 * 300.00499 * 5 3 2 8 8 N 1.31516 * 119.99455 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00435 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47109 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47320 * 300.00085 * 9 7 5 12 12 H 1.48507 * 109.47219 * 60.00108 * 9 7 5 13 13 N 1.46899 * 109.47365 * 294.37064 * 3 2 1 14 14 C 1.46900 * 111.00218 * 156.20959 * 13 3 2 15 15 H 1.08995 * 109.54630 * 33.71900 * 14 13 3 16 16 C 1.53181 * 109.53950 * 273.54637 * 14 13 3 17 17 C 1.53088 * 109.16489 * 297.11411 * 16 14 13 18 18 O 1.42904 * 109.41376 * 302.39127 * 17 16 14 19 19 C 1.42902 * 114.09848 * 61.16102 * 18 17 16 20 20 H 1.08996 * 109.48468 * 58.83069 * 19 18 17 21 21 C 1.50698 * 109.48406 * 178.85952 * 19 18 17 22 22 C 1.38234 * 119.99920 * 39.72587 * 21 19 18 23 23 C 1.38244 * 119.99836 * 179.79243 * 22 21 19 24 24 C 1.38235 * 119.99948 * 0.45834 * 23 22 21 25 25 C 1.38238 * 119.99847 * 359.77300 * 24 23 22 26 26 C 1.38234 * 120.00155 * 0.02562 * 25 24 23 27 27 C 1.53100 * 109.41330 * 298.83896 * 19 18 17 28 28 H 1.08998 * 109.47015 * 305.67862 * 1 2 3 29 29 H 1.09004 * 109.47396 * 65.67944 * 1 2 3 30 30 H 1.08996 * 109.47124 * 185.67719 * 1 2 3 31 31 H 1.09000 * 109.47268 * 240.00232 * 2 1 3 32 32 H 1.08999 * 109.47256 * 120.00208 * 2 1 3 33 33 H 0.96994 * 120.00137 * 180.02562 * 8 7 5 34 34 H 1.00902 * 110.99668 * 32.25432 * 13 3 2 35 35 H 1.09004 * 109.52391 * 57.02210 * 16 14 13 36 36 H 1.09006 * 109.51952 * 177.20988 * 16 14 13 37 37 H 1.08999 * 109.48238 * 62.37533 * 17 16 14 38 38 H 1.09001 * 109.48122 * 182.40283 * 17 16 14 39 39 H 1.07999 * 119.99908 * 359.97438 * 22 21 19 40 40 H 1.08001 * 119.99833 * 180.24742 * 23 22 21 41 41 H 1.07994 * 120.00197 * 179.78998 * 24 23 22 42 42 H 1.08004 * 120.00164 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.99961 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.52419 * 297.70505 * 27 19 18 45 45 H 1.08996 * 109.52171 * 177.51233 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 0.8353 5 6 3.5405 1.4448 0.1395 6 1 4.1538 1.8865 -0.6319 7 6 4.1304 0.8829 1.2519 8 7 3.3835 0.3454 2.1915 9 14 5.9904 0.8852 1.4245 10 1 6.3699 0.2266 2.7001 11 1 6.5940 0.1463 0.2865 12 1 6.4858 2.2852 1.4242 13 7 1.6644 2.0947 -1.2616 14 6 1.6119 3.5543 -1.1044 15 1 2.3712 3.8717 -0.3898 16 6 0.2265 3.9653 -0.5962 17 6 -0.8255 3.5840 -1.6409 18 8 -0.5120 4.2165 -2.8835 19 6 0.7514 3.8336 -3.4306 20 1 0.7678 2.7552 -3.5877 21 6 0.9630 4.5366 -4.7467 22 6 0.5772 5.8556 -4.8956 23 6 0.7752 6.5017 -6.1016 24 6 1.3504 5.8260 -7.1615 25 6 1.7319 4.5055 -7.0139 26 6 1.5377 3.8607 -5.8067 27 6 1.8669 4.2250 -2.4577 28 1 -0.3633 0.5994 0.8348 29 1 -0.3634 0.4232 -0.9365 30 1 -0.3633 -1.0226 0.1017 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.7984 -0.0496 2.9742 34 1 0.7866 1.7363 -1.6065 35 1 0.0140 3.4491 0.3400 36 1 0.2035 5.0428 -0.4325 37 1 -0.8298 2.5023 -1.7745 38 1 -1.8086 3.9126 -1.3036 39 1 0.1237 6.3822 -4.0689 40 1 0.4774 7.5335 -6.2167 41 1 1.5021 6.3297 -8.1046 42 1 2.1818 3.9776 -7.8419 43 1 1.8354 2.8288 -5.6916 44 1 1.8770 5.3076 -2.3315 45 1 2.8274 3.8944 -2.8528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:25 Heat of formation + Delta-G solvation = -46.023153 kcal Electronic energy + Delta-G solvation = -23719.784176 eV Core-core repulsion = 20507.777075 eV Total energy + Delta-G solvation = -3212.007101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18683 -39.60959 -37.75077 -35.07138 -33.79348 -33.45081 -31.73308 -30.88173 -30.14765 -28.13521 -25.70523 -24.74489 -24.62430 -23.37775 -22.12163 -21.52440 -20.23169 -18.28246 -18.10055 -17.14347 -16.96662 -16.73427 -16.42880 -16.00292 -15.82833 -15.24273 -15.04140 -14.91858 -14.59983 -14.45968 -14.17027 -13.70241 -13.60607 -13.42840 -13.28476 -12.98941 -12.82617 -12.75216 -12.56413 -12.40812 -12.26152 -11.97817 -11.89806 -11.75668 -11.56385 -11.52245 -11.20587 -10.91154 -10.48883 -10.40120 -9.76568 -9.56469 -8.97817 -8.06403 -6.17780 0.44769 0.55775 1.41168 1.41919 1.49673 2.43561 2.70850 3.00002 3.18783 3.58072 3.80548 3.89809 4.02259 4.06230 4.13292 4.18540 4.24668 4.32649 4.36023 4.44786 4.53590 4.57467 4.69443 4.71315 4.74082 4.75902 4.90370 4.97315 5.03661 5.06354 5.12806 5.17112 5.20728 5.24831 5.31129 5.37954 5.61405 5.61894 5.66238 5.72991 5.76260 5.89585 6.15711 6.27164 6.37321 6.51844 6.95384 7.00014 7.51105 8.96360 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.004290 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.985996 B = 6525.189138 C = 7280.857657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.229 3.771 4 H -0.027 1.027 5 C -0.511 4.511 6 H 0.047 0.953 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.284 1.284 11 H -0.274 1.274 12 H -0.276 1.276 13 N -0.679 5.679 14 C 0.089 3.911 15 H 0.055 0.945 16 C -0.177 4.177 17 C 0.067 3.933 18 O -0.382 6.382 19 C 0.140 3.860 20 H 0.063 0.937 21 C -0.092 4.092 22 C -0.109 4.109 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.116 4.116 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.260 0.740 34 H 0.325 0.675 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.125 0.875 44 H 0.071 0.929 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.788 9.326 -14.495 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.120 3.880 4 H -0.010 1.010 5 C -0.550 4.550 6 H 0.065 0.935 7 C -0.187 4.187 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.210 1.210 11 H -0.200 1.200 12 H -0.202 1.202 13 N -0.312 5.312 14 C -0.022 4.022 15 H 0.073 0.927 16 C -0.217 4.217 17 C -0.010 4.010 18 O -0.302 6.302 19 C 0.082 3.918 20 H 0.081 0.919 21 C -0.092 4.092 22 C -0.127 4.127 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.142 4.142 27 C -0.154 4.154 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.145 0.855 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.161 0.839 43 H 0.143 0.857 44 H 0.090 0.910 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.244 9.351 -14.655 18.833 hybrid contribution 0.556 -0.388 1.473 1.622 sum -6.688 8.963 -13.181 17.286 Atomic orbital electron populations 1.21758 0.96315 1.01171 1.00346 1.21595 0.94189 0.99167 1.01105 1.18892 0.93755 0.90455 0.84860 1.00986 1.21443 0.92983 1.36516 1.04041 0.93455 1.25627 1.01963 0.95411 0.95652 1.69983 1.36150 1.39926 1.09808 0.85710 0.81182 0.78121 0.77163 1.20956 1.19966 1.20165 1.60735 1.35803 1.03138 1.31488 1.21465 0.95550 0.88974 0.96163 0.92703 1.22740 0.96900 1.02697 0.99342 1.22603 0.98622 0.96779 0.82987 1.87867 1.36151 1.68960 1.37196 1.20746 0.83539 0.97319 0.90163 0.91925 1.19711 1.00321 0.95115 0.94046 1.21117 0.99065 0.94053 0.98483 1.21459 0.99387 1.00938 0.92846 1.21516 0.98207 0.94702 0.99719 1.21404 1.00082 0.95561 0.97307 1.21196 0.99519 1.00464 0.93042 1.22037 0.98854 0.99868 0.94649 0.94213 0.92708 0.92467 0.94736 0.91394 0.93123 0.85458 0.92074 0.90209 0.93391 0.86641 0.85941 0.83930 0.83491 0.83857 0.85730 0.91012 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 9.64 71.98 0.69 -4.39 16 2 C -0.12 -5.69 5.37 30.59 0.16 -5.53 16 3 C 0.23 11.26 1.85 44.17 0.08 11.34 16 4 H -0.03 -1.49 7.22 -2.39 -0.02 -1.51 16 5 C -0.51 -28.35 8.44 25.60 0.22 -28.14 16 6 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 7 C 0.01 0.65 5.29 84.66 0.45 1.10 16 8 N -0.92 -52.63 11.29 21.45 0.24 -52.38 16 9 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 N -0.68 -27.82 5.64 -472.71 -2.66 -30.48 16 14 C 0.09 3.30 2.68 45.04 0.12 3.43 16 15 H 0.05 2.38 7.58 -2.39 -0.02 2.36 16 16 C -0.18 -5.54 5.70 30.68 0.18 -5.36 16 17 C 0.07 1.81 6.58 72.01 0.47 2.28 16 18 O -0.38 -11.11 9.72 -148.98 -1.45 -12.56 16 19 C 0.14 4.12 2.61 29.88 0.08 4.20 16 20 H 0.06 1.96 7.27 -2.39 -0.02 1.95 16 21 C -0.09 -2.47 4.97 -19.87 -0.10 -2.57 16 22 C -0.11 -2.66 9.36 22.27 0.21 -2.45 16 23 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 24 C -0.12 -2.23 10.05 22.27 0.22 -2.00 16 25 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 26 C -0.12 -3.04 9.67 22.27 0.22 -2.82 16 27 C -0.12 -3.74 5.09 30.69 0.16 -3.58 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.76 6.28 -2.38 -0.01 1.74 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 3.62 5.94 -2.39 -0.01 3.61 16 33 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.33 12.04 3.76 -89.69 -0.34 11.70 16 35 H 0.06 2.07 7.50 -2.39 -0.02 2.05 16 36 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.05 1.33 6.05 -2.39 -0.01 1.31 16 38 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.12 2.95 7.77 -2.91 -0.02 2.93 16 40 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 43 H 0.12 2.92 8.04 -2.91 -0.02 2.90 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -61.36 349.61 2.38 -58.97 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.62 Total: 29.15 kcal Atomic # 6 Polarization: -42.70 SS G_CDS: 3.60 Total: -39.09 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -2.42 Total: -82.87 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.45 Total: -12.56 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -61.36 2.38 -58.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.950 kcal (2) G-P(sol) polarization free energy of solvation -61.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds