Wall clock time and date at job start Tue Mar 31 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46826 * 2 1 4 4 H 1.09005 * 109.47072 * 304.72059 * 3 2 1 5 5 C 1.50705 * 109.47119 * 184.72403 * 3 2 1 6 6 H 1.07995 * 119.99929 * 240.00122 * 5 3 2 7 7 C 1.37880 * 120.00161 * 59.99751 * 5 3 2 8 8 N 1.31518 * 119.99524 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00191 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47047 * 60.00142 * 9 7 5 11 11 H 1.48497 * 109.47181 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47145 * 300.00343 * 9 7 5 13 13 N 1.46897 * 109.47576 * 64.72213 * 3 2 1 14 14 C 1.46890 * 111.00715 * 215.40586 * 13 3 2 15 15 H 1.09004 * 109.54020 * 33.30197 * 14 13 3 16 16 C 1.53177 * 109.54513 * 273.13164 * 14 13 3 17 17 C 1.53091 * 109.15998 * 297.10763 * 16 14 13 18 18 O 1.42905 * 109.41732 * 302.39350 * 17 16 14 19 19 C 1.42901 * 114.09654 * 61.15244 * 18 17 16 20 20 H 1.09000 * 109.47953 * 58.84167 * 19 18 17 21 21 C 1.50702 * 109.48014 * 178.86234 * 19 18 17 22 22 C 1.38233 * 119.99870 * 39.72735 * 21 19 18 23 23 C 1.38237 * 119.99926 * 179.78667 * 22 21 19 24 24 C 1.38238 * 120.00006 * 0.47075 * 23 22 21 25 25 C 1.38240 * 120.00017 * 359.76138 * 24 23 22 26 26 C 1.38238 * 119.99920 * 220.00428 * 21 19 18 27 27 C 1.53178 * 109.55043 * 153.47821 * 14 13 3 28 28 H 1.09002 * 109.46679 * 174.72023 * 1 2 3 29 29 H 1.08991 * 109.46639 * 294.72022 * 1 2 3 30 30 H 1.09000 * 109.46742 * 54.72489 * 1 2 3 31 31 H 1.08998 * 109.46841 * 240.00494 * 2 1 3 32 32 H 1.09001 * 109.46976 * 120.00014 * 2 1 3 33 33 H 0.97006 * 119.99507 * 180.02562 * 8 7 5 34 34 H 1.00903 * 110.99727 * 339.36274 * 13 3 2 35 35 H 1.08993 * 109.52425 * 57.01290 * 16 14 13 36 36 H 1.09001 * 109.52208 * 177.14255 * 16 14 13 37 37 H 1.08996 * 109.48036 * 62.37285 * 17 16 14 38 38 H 1.08998 * 109.48481 * 182.39940 * 17 16 14 39 39 H 1.08001 * 120.00242 * 0.02562 * 22 21 19 40 40 H 1.08003 * 120.00227 * 180.25446 * 23 22 21 41 41 H 1.07998 * 120.00379 * 179.78734 * 24 23 22 42 42 H 1.07993 * 120.00377 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.00385 * 359.97438 * 26 21 19 44 44 H 1.08994 * 109.52560 * 182.79441 * 27 14 13 45 45 H 1.09002 * 109.52103 * 302.98911 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6092 1.9802 -0.8447 5 6 3.5425 1.4442 -0.1170 6 1 4.1442 1.8900 0.6611 7 6 4.1490 0.8765 -1.2175 8 7 3.4161 0.3340 -2.1653 9 14 6.0113 0.8779 -1.3622 10 1 6.5977 0.1450 -0.2114 11 1 6.4099 0.2115 -2.6279 12 1 6.5067 2.2778 -1.3618 13 7 1.6457 2.1014 1.2523 14 6 1.3282 3.5174 1.0250 15 1 0.8866 3.6378 0.0357 16 6 2.6096 4.3513 1.1189 17 6 3.1810 4.2369 2.5346 18 8 2.2004 4.6709 3.4792 19 6 0.9987 3.8978 3.4695 20 1 1.2352 2.8556 3.6842 21 6 0.0536 4.4249 4.5184 22 6 -0.0665 5.7874 4.7185 23 6 -0.9367 6.2711 5.6775 24 6 -1.6796 5.3919 6.4431 25 6 -1.5560 4.0292 6.2463 26 6 -0.6891 3.5457 5.2842 27 6 0.3379 3.9981 2.0902 28 1 -0.3633 -1.0233 -0.0946 29 1 -0.3632 0.4297 0.9334 30 1 -0.3633 0.5935 -0.8390 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8428 -0.0658 -2.9393 34 1 0.8702 1.6218 1.6845 35 1 3.3398 3.9793 0.4003 36 1 2.3821 5.3947 0.9002 37 1 3.4461 3.1992 2.7368 38 1 4.0697 4.8623 2.6196 39 1 0.5167 6.4742 4.1230 40 1 -1.0336 7.3357 5.8311 41 1 -2.3569 5.7696 7.1947 42 1 -2.1367 3.3424 6.8440 43 1 -0.5923 2.4811 5.1306 44 1 0.0644 5.0344 1.8921 45 1 -0.5552 3.3735 2.0655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:28 Heat of formation + Delta-G solvation = -31.377141 kcal Electronic energy + Delta-G solvation = -23735.841334 eV Core-core repulsion = 20524.469331 eV Total energy + Delta-G solvation = -3211.372003 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.85068 -38.40953 -36.14437 -33.34464 -32.55085 -31.67192 -30.87482 -29.26062 -28.95082 -26.32013 -24.18822 -23.37674 -22.79253 -22.43746 -21.01722 -19.67376 -18.84028 -17.06146 -16.30293 -15.83196 -15.68135 -15.16744 -14.80042 -14.69627 -14.26772 -13.97659 -13.90673 -13.33898 -13.01784 -12.97976 -12.92776 -12.66106 -12.31969 -11.99375 -11.67124 -11.44620 -11.27259 -11.14981 -11.04599 -10.84631 -10.76117 -10.67502 -10.27793 -9.98122 -9.89577 -9.65425 -9.51375 -9.24882 -9.04006 -8.90154 -8.56929 -8.33154 -7.25664 -5.97093 -4.00430 1.33998 1.42433 3.32959 3.37796 3.40704 3.75203 4.16289 4.43631 4.86131 4.94835 4.99696 5.10621 5.14749 5.31212 5.37670 5.43305 5.47527 5.54503 5.65677 5.73338 5.77168 5.97508 6.01894 6.07654 6.10461 6.13026 6.15620 6.28412 6.36992 6.44654 6.49077 6.50279 6.58135 6.59098 6.75849 6.81958 6.86163 7.00843 7.03907 7.16255 7.45182 7.69424 7.75883 7.91705 8.30234 8.41095 8.71797 9.06497 9.64091 11.08208 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.004143 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.350039 B = 6757.471391 C = 7475.366978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.219 3.781 4 H 0.007 0.993 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.681 5.681 14 C 0.094 3.906 15 H 0.040 0.960 16 C -0.140 4.140 17 C 0.072 3.928 18 O -0.386 6.386 19 C 0.140 3.860 20 H 0.075 0.925 21 C -0.073 4.073 22 C -0.094 4.094 23 C -0.126 4.126 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.111 4.111 27 C -0.144 4.144 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.099 0.901 32 H 0.040 0.960 33 H 0.259 0.741 34 H 0.318 0.682 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.068 0.932 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.847 7.883 12.159 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.112 3.888 4 H 0.024 0.976 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.313 5.313 14 C -0.017 4.017 15 H 0.058 0.942 16 C -0.179 4.179 17 C -0.004 4.004 18 O -0.305 6.305 19 C 0.082 3.918 20 H 0.093 0.907 21 C -0.073 4.073 22 C -0.112 4.112 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.182 4.182 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.086 0.914 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.141 8.067 12.282 16.799 hybrid contribution 0.065 -0.355 -0.909 0.978 sum -8.075 7.712 11.373 15.938 Atomic orbital electron populations 1.21881 0.99671 0.99680 0.99469 1.21860 0.91137 1.00786 1.03104 1.19252 0.95440 0.89632 0.84457 0.97579 1.21194 0.91114 1.35927 1.04436 0.91951 1.24969 0.97947 0.95761 0.95943 1.69863 1.34786 1.39313 1.09746 0.86651 0.86015 0.78130 0.77116 1.20370 1.21571 1.20422 1.60798 1.40626 1.00330 1.29534 1.21456 0.93739 0.90787 0.95676 0.94214 1.22136 0.99097 0.98076 0.98544 1.22478 0.89514 1.00718 0.87663 1.87801 1.25902 1.57077 1.59745 1.20728 0.84173 0.95033 0.91863 0.90702 1.19838 0.96962 0.93860 0.96661 1.21045 0.97315 0.95229 0.97660 1.21157 0.97081 0.99545 0.96647 1.21118 0.99921 0.93582 0.99807 1.21073 0.99097 0.95527 0.98477 1.21022 0.96738 0.99649 0.95509 1.22426 0.98511 1.01848 0.95396 0.94416 0.94764 0.93929 0.88242 0.94147 0.93097 0.86401 0.88863 0.92998 0.91161 0.90239 0.85638 0.86312 0.86450 0.86186 0.85894 0.91358 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.68 37.16 0.36 -2.44 16 2 C -0.13 -2.95 5.28 -26.73 -0.14 -3.09 16 3 C 0.22 5.16 2.04 -68.87 -0.14 5.02 16 4 H 0.01 0.17 7.23 -51.93 -0.38 -0.20 16 5 C -0.49 -12.72 7.57 -34.44 -0.26 -12.98 16 6 H 0.06 1.64 7.55 -52.49 -0.40 1.24 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.35 16 8 N -0.90 -24.93 11.30 55.43 0.63 -24.31 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.68 -13.34 4.95 -100.77 -0.50 -13.83 16 14 C 0.09 1.68 2.84 -67.54 -0.19 1.49 16 15 H 0.04 0.77 7.32 -51.93 -0.38 0.39 16 16 C -0.14 -2.49 5.65 -26.59 -0.15 -2.64 16 17 C 0.07 1.22 6.68 37.20 0.25 1.47 16 18 O -0.39 -6.36 9.72 -35.23 -0.34 -6.70 16 19 C 0.14 2.10 2.69 -27.74 -0.07 2.03 16 20 H 0.08 1.19 7.57 -51.93 -0.39 0.80 16 21 C -0.07 -1.00 4.97 -104.62 -0.52 -1.52 16 22 C -0.09 -1.22 9.36 -39.58 -0.37 -1.59 16 23 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 24 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 25 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 26 C -0.11 -1.35 9.67 -39.58 -0.38 -1.74 16 27 C -0.14 -2.16 4.79 -26.50 -0.13 -2.28 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.03 0.57 6.66 -51.93 -0.35 0.22 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 2.57 5.96 -51.93 -0.31 2.26 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.32 5.81 6.04 -39.29 -0.24 5.57 16 35 H 0.09 1.90 6.67 -51.93 -0.35 1.55 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.30 7.75 -51.93 -0.40 0.90 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.13 1.61 7.77 -52.49 -0.41 1.20 16 40 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 1.35 8.04 -52.49 -0.42 0.93 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -27.41 351.43 -10.35 -37.76 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.37 Total: 7.90 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -3.04 Total: -22.12 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.13 Total: -38.14 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.34 Total: -6.70 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.41 -10.35 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.383 kcal (2) G-P(sol) polarization free energy of solvation -27.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds