Wall clock time and date at job start Tue Mar 31 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46826 * 2 1 4 4 H 1.09005 * 109.47072 * 304.72059 * 3 2 1 5 5 C 1.50705 * 109.47119 * 184.72403 * 3 2 1 6 6 H 1.07995 * 119.99929 * 240.00122 * 5 3 2 7 7 C 1.37880 * 120.00161 * 59.99751 * 5 3 2 8 8 N 1.31518 * 119.99524 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00191 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47047 * 60.00142 * 9 7 5 11 11 H 1.48497 * 109.47181 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47145 * 300.00343 * 9 7 5 13 13 N 1.46897 * 109.47576 * 64.72213 * 3 2 1 14 14 C 1.46890 * 111.00715 * 215.40586 * 13 3 2 15 15 H 1.09004 * 109.54020 * 33.30197 * 14 13 3 16 16 C 1.53177 * 109.54513 * 273.13164 * 14 13 3 17 17 C 1.53091 * 109.15998 * 297.10763 * 16 14 13 18 18 O 1.42905 * 109.41732 * 302.39350 * 17 16 14 19 19 C 1.42901 * 114.09654 * 61.15244 * 18 17 16 20 20 H 1.09000 * 109.47953 * 58.84167 * 19 18 17 21 21 C 1.50702 * 109.48014 * 178.86234 * 19 18 17 22 22 C 1.38233 * 119.99870 * 39.72735 * 21 19 18 23 23 C 1.38237 * 119.99926 * 179.78667 * 22 21 19 24 24 C 1.38238 * 120.00006 * 0.47075 * 23 22 21 25 25 C 1.38240 * 120.00017 * 359.76138 * 24 23 22 26 26 C 1.38238 * 119.99920 * 220.00428 * 21 19 18 27 27 C 1.53178 * 109.55043 * 153.47821 * 14 13 3 28 28 H 1.09002 * 109.46679 * 174.72023 * 1 2 3 29 29 H 1.08991 * 109.46639 * 294.72022 * 1 2 3 30 30 H 1.09000 * 109.46742 * 54.72489 * 1 2 3 31 31 H 1.08998 * 109.46841 * 240.00494 * 2 1 3 32 32 H 1.09001 * 109.46976 * 120.00014 * 2 1 3 33 33 H 0.97006 * 119.99507 * 180.02562 * 8 7 5 34 34 H 1.00903 * 110.99727 * 339.36274 * 13 3 2 35 35 H 1.08993 * 109.52425 * 57.01290 * 16 14 13 36 36 H 1.09001 * 109.52208 * 177.14255 * 16 14 13 37 37 H 1.08996 * 109.48036 * 62.37285 * 17 16 14 38 38 H 1.08998 * 109.48481 * 182.39940 * 17 16 14 39 39 H 1.08001 * 120.00242 * 0.02562 * 22 21 19 40 40 H 1.08003 * 120.00227 * 180.25446 * 23 22 21 41 41 H 1.07998 * 120.00379 * 179.78734 * 24 23 22 42 42 H 1.07993 * 120.00377 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.00385 * 359.97438 * 26 21 19 44 44 H 1.08994 * 109.52560 * 182.79441 * 27 14 13 45 45 H 1.09002 * 109.52103 * 302.98911 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6092 1.9802 -0.8447 5 6 3.5425 1.4442 -0.1170 6 1 4.1442 1.8900 0.6611 7 6 4.1490 0.8765 -1.2175 8 7 3.4161 0.3340 -2.1653 9 14 6.0113 0.8779 -1.3622 10 1 6.5977 0.1450 -0.2114 11 1 6.4099 0.2115 -2.6279 12 1 6.5067 2.2778 -1.3618 13 7 1.6457 2.1014 1.2523 14 6 1.3282 3.5174 1.0250 15 1 0.8866 3.6378 0.0357 16 6 2.6096 4.3513 1.1189 17 6 3.1810 4.2369 2.5346 18 8 2.2004 4.6709 3.4792 19 6 0.9987 3.8978 3.4695 20 1 1.2352 2.8556 3.6842 21 6 0.0536 4.4249 4.5184 22 6 -0.0665 5.7874 4.7185 23 6 -0.9367 6.2711 5.6775 24 6 -1.6796 5.3919 6.4431 25 6 -1.5560 4.0292 6.2463 26 6 -0.6891 3.5457 5.2842 27 6 0.3379 3.9981 2.0902 28 1 -0.3633 -1.0233 -0.0946 29 1 -0.3632 0.4297 0.9334 30 1 -0.3633 0.5935 -0.8390 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8428 -0.0658 -2.9393 34 1 0.8702 1.6218 1.6845 35 1 3.3398 3.9793 0.4003 36 1 2.3821 5.3947 0.9002 37 1 3.4461 3.1992 2.7368 38 1 4.0697 4.8623 2.6196 39 1 0.5167 6.4742 4.1230 40 1 -1.0336 7.3357 5.8311 41 1 -2.3569 5.7696 7.1947 42 1 -2.1367 3.3424 6.8440 43 1 -0.5923 2.4811 5.1306 44 1 0.0644 5.0344 1.8921 45 1 -0.5552 3.3735 2.0655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:27 Heat of formation + Delta-G solvation = -45.300247 kcal Electronic energy + Delta-G solvation = -23736.445085 eV Core-core repulsion = 20524.469331 eV Total energy + Delta-G solvation = -3211.975754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.02690 -39.50576 -37.78211 -35.01439 -33.65300 -33.53882 -31.72534 -30.76893 -30.19829 -28.16671 -25.47802 -24.68128 -24.56082 -23.35565 -22.02858 -21.48051 -20.30444 -18.38593 -17.94904 -17.05675 -16.83922 -16.64997 -16.48861 -15.96063 -15.70872 -15.25309 -15.08865 -14.75751 -14.49529 -14.29130 -14.15386 -13.90217 -13.58950 -13.33885 -13.28024 -12.98604 -12.88313 -12.67028 -12.57243 -12.32730 -12.17383 -11.88795 -11.84737 -11.59224 -11.55835 -11.40100 -11.05625 -10.99142 -10.45500 -10.36276 -9.75947 -9.56841 -8.96263 -8.02307 -6.11946 0.45443 0.56429 1.43365 1.44149 1.51165 2.46090 2.78313 3.04215 3.22989 3.59506 3.74497 4.03154 4.05894 4.13913 4.20077 4.27672 4.33541 4.39280 4.42505 4.49728 4.55999 4.67620 4.70859 4.72818 4.75587 4.78084 4.99751 5.03354 5.08714 5.11647 5.15680 5.20987 5.24102 5.29697 5.33332 5.40982 5.61052 5.62628 5.67174 5.75777 5.79482 5.93722 6.16406 6.39980 6.40253 6.58568 6.99679 7.01169 7.56092 9.00646 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.004143 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.350039 B = 6757.471391 C = 7475.366978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.228 3.772 4 H -0.028 1.028 5 C -0.496 4.496 6 H 0.056 0.944 7 C 0.008 3.992 8 N -0.923 5.923 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.674 5.674 14 C 0.093 3.907 15 H 0.022 0.978 16 C -0.137 4.137 17 C 0.080 3.920 18 O -0.389 6.389 19 C 0.143 3.857 20 H 0.064 0.936 21 C -0.093 4.093 22 C -0.110 4.110 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.131 4.131 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.257 0.743 34 H 0.328 0.672 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.141 0.859 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.130 0.870 44 H 0.076 0.924 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.095 8.673 14.327 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.120 3.880 4 H -0.011 1.011 5 C -0.535 4.535 6 H 0.074 0.926 7 C -0.190 4.190 8 N -0.564 5.564 9 Si 0.775 3.225 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.307 5.307 14 C -0.018 4.018 15 H 0.040 0.960 16 C -0.175 4.175 17 C 0.004 3.996 18 O -0.308 6.308 19 C 0.085 3.915 20 H 0.082 0.918 21 C -0.093 4.093 22 C -0.129 4.129 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.169 4.169 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.147 0.853 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.114 0.886 39 H 0.137 0.863 40 H 0.158 0.842 41 H 0.164 0.836 42 H 0.163 0.837 43 H 0.148 0.852 44 H 0.094 0.906 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.397 8.864 14.468 19.396 hybrid contribution 0.398 -0.555 -1.519 1.665 sum -8.999 8.309 12.949 17.824 Atomic orbital electron populations 1.21744 0.96457 1.01003 1.00378 1.21684 0.94039 0.99485 1.01249 1.18994 0.94105 0.90169 0.84764 1.01091 1.21466 0.92602 1.35282 1.04127 0.92625 1.25643 1.01730 0.95750 0.95857 1.70001 1.36110 1.40136 1.10105 0.85756 0.81563 0.78174 0.76969 1.19986 1.21497 1.19945 1.60664 1.41344 1.01203 1.27454 1.21476 0.94607 0.89749 0.95947 0.96031 1.22066 0.98262 0.98726 0.98462 1.22351 0.90269 0.99918 0.87064 1.87810 1.26351 1.57290 1.59384 1.20726 0.83917 0.94467 0.92378 0.91782 1.19765 0.97666 0.94565 0.97308 1.21113 0.98238 0.94878 0.98626 1.21446 0.96364 1.00993 0.95906 1.21517 0.99572 0.93370 0.99732 1.21416 0.98546 0.96383 0.97930 1.21206 0.97030 0.99943 0.95859 1.22312 0.97882 1.02338 0.94358 0.92562 0.92399 0.94728 0.91527 0.94439 0.93367 0.85345 0.91955 0.91447 0.93209 0.88618 0.86294 0.84155 0.83566 0.83694 0.85235 0.90562 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 9.68 71.99 0.70 -4.36 16 2 C -0.13 -5.78 5.28 30.60 0.16 -5.62 16 3 C 0.23 11.02 2.04 44.17 0.09 11.11 16 4 H -0.03 -1.56 7.23 -2.38 -0.02 -1.58 16 5 C -0.50 -26.57 7.57 25.60 0.19 -26.37 16 6 H 0.06 3.00 7.55 -2.91 -0.02 2.97 16 7 C 0.01 0.42 5.29 84.65 0.45 0.87 16 8 N -0.92 -52.74 11.30 21.45 0.24 -52.50 16 9 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.67 -26.72 4.95 -472.72 -2.34 -29.06 16 14 C 0.09 3.34 2.84 45.04 0.13 3.47 16 15 H 0.02 0.87 7.32 -2.39 -0.02 0.85 16 16 C -0.14 -4.92 5.65 30.68 0.17 -4.74 16 17 C 0.08 2.70 6.68 72.01 0.48 3.18 16 18 O -0.39 -12.57 9.72 -148.98 -1.45 -14.02 16 19 C 0.14 4.18 2.69 29.94 0.08 4.26 16 20 H 0.06 2.00 7.57 -2.39 -0.02 1.98 16 21 C -0.09 -2.40 4.97 -19.86 -0.10 -2.50 16 22 C -0.11 -2.67 9.36 22.27 0.21 -2.46 16 23 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 24 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 25 C -0.12 -2.27 10.05 22.27 0.22 -2.05 16 26 C -0.12 -2.73 9.67 22.27 0.22 -2.52 16 27 C -0.13 -3.82 4.79 30.75 0.15 -3.67 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.82 6.66 -2.39 -0.02 1.81 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 3.53 5.96 -2.39 -0.01 3.52 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 34 H 0.33 11.78 6.04 -89.69 -0.54 11.24 16 35 H 0.06 2.63 6.67 -2.39 -0.02 2.61 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.05 1.87 7.75 -2.39 -0.02 1.85 16 38 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.12 2.94 7.77 -2.91 -0.02 2.91 16 40 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 42 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.13 2.61 8.04 -2.91 -0.02 2.59 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 Total: -1.00 -60.15 351.43 2.49 -57.65 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.42 Total: 27.62 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 3.60 Total: -35.57 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -2.10 Total: -81.56 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -1.45 Total: -14.02 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -60.15 2.49 -57.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.351 kcal (2) G-P(sol) polarization free energy of solvation -60.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds