Wall clock time and date at job start Tue Mar 31 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46957 * 2 1 4 4 H 1.08999 * 109.47550 * 54.56078 * 3 2 1 5 5 C 1.50702 * 109.47276 * 174.56452 * 3 2 1 6 6 H 1.07995 * 120.00351 * 119.99514 * 5 3 2 7 7 C 1.37878 * 119.99763 * 300.00349 * 5 3 2 8 8 N 1.31507 * 120.00101 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99651 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47293 * 89.99641 * 9 7 5 11 11 H 1.48501 * 109.47048 * 209.99386 * 9 7 5 12 12 H 1.48493 * 109.47398 * 329.99397 * 9 7 5 13 13 N 1.46904 * 109.47031 * 294.56220 * 3 2 1 14 14 C 1.46903 * 110.99692 * 152.68743 * 13 3 2 15 15 H 1.08999 * 110.73271 * 32.91806 * 14 13 3 16 16 C 1.54345 * 110.81973 * 156.31742 * 14 13 3 17 17 C 1.51386 * 105.17697 * 144.59402 * 16 14 13 18 18 C 1.38544 * 130.32416 * 162.82101 * 17 16 14 19 19 C 1.37999 * 120.29295 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.06453 * 180.02562 * 19 18 17 21 21 C 1.38757 * 119.87801 * 0.02562 * 19 18 17 22 22 O 1.35897 * 120.08945 * 179.97438 * 21 19 18 23 23 C 1.42907 * 116.99813 * 180.02562 * 22 21 19 24 24 C 1.38594 * 119.81366 * 0.25231 * 21 19 18 25 25 C 1.38263 * 109.73957 * 342.80473 * 17 16 14 26 26 C 1.51377 * 109.75503 * 359.97438 * 25 17 16 27 27 H 1.09002 * 109.47118 * 181.28612 * 1 2 3 28 28 H 1.08992 * 109.47484 * 301.29466 * 1 2 3 29 29 H 1.09005 * 109.46899 * 61.29595 * 1 2 3 30 30 H 1.08993 * 109.47119 * 239.99657 * 2 1 3 31 31 H 1.09004 * 109.46714 * 119.99828 * 2 1 3 32 32 H 0.97002 * 120.00190 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00110 * 28.73998 * 13 3 2 34 34 H 1.09004 * 110.29807 * 25.67403 * 16 14 13 35 35 H 1.08997 * 110.30115 * 263.52631 * 16 14 13 36 36 H 1.08003 * 119.85356 * 359.97438 * 18 17 16 37 37 H 1.08993 * 109.47823 * 269.98584 * 20 19 18 38 38 H 1.09007 * 109.46691 * 29.98271 * 20 19 18 39 39 H 1.09002 * 109.47427 * 149.97304 * 20 19 18 40 40 H 1.08996 * 109.46964 * 59.99559 * 23 22 21 41 41 H 1.09000 * 109.47230 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.46676 * 299.99990 * 23 22 21 43 43 H 1.07999 * 119.91141 * 179.74814 * 24 21 19 44 44 H 1.08997 * 110.30626 * 258.27519 * 26 25 17 45 45 H 1.08997 * 110.38539 * 136.16915 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9837 0.8372 5 6 3.5410 1.4447 0.1346 6 1 4.1518 1.8872 -0.6383 7 6 4.1344 0.8815 1.2444 8 7 3.3906 0.3429 2.1857 9 14 5.9950 0.8837 1.4109 10 1 6.4277 2.1184 2.1134 11 1 6.4235 -0.3054 2.1905 12 1 6.6128 0.8396 0.0613 13 7 1.6604 2.0960 -1.2597 14 6 1.5269 3.5479 -1.0801 15 1 2.2340 3.9111 -0.3343 16 6 1.7172 4.2865 -2.4219 17 6 0.7633 5.4607 -2.3667 18 6 0.7235 6.6198 -3.1247 19 6 -0.2526 7.5681 -2.8956 20 6 -0.2915 8.8267 -3.7235 21 6 -1.1982 7.3606 -1.9015 22 8 -2.1610 8.2918 -1.6720 23 6 -3.1004 8.0109 -0.6323 24 6 -1.1545 6.2036 -1.1397 25 6 -0.1780 5.2515 -1.3759 26 6 0.0789 3.9224 -0.6984 27 1 -0.3633 -1.0274 0.0231 28 1 -0.3634 0.5338 0.8781 29 1 -0.3633 0.4936 -0.9014 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8081 -0.0529 2.9667 33 1 0.8111 1.6982 -1.6319 34 1 1.4618 3.6305 -3.2541 35 1 2.7445 4.6378 -2.5178 36 1 1.4595 6.7819 -3.8982 37 1 0.3117 9.5967 -3.2427 38 1 0.1071 8.6205 -4.7169 39 1 -1.3214 9.1730 -3.8100 40 1 -2.5717 7.8967 0.3139 41 1 -3.8124 8.8325 -0.5544 42 1 -3.6338 7.0891 -0.8641 43 1 -1.8873 6.0424 -0.3628 44 1 -0.6170 3.1690 -1.0674 45 1 -0.0126 4.0235 0.3830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:50 Heat of formation + Delta-G solvation = -25.888839 kcal Electronic energy + Delta-G solvation = -23047.255433 eV Core-core repulsion = 19836.121421 eV Total energy + Delta-G solvation = -3211.134012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.50276 -38.62612 -36.53772 -34.66835 -32.31706 -31.57308 -30.55029 -28.97886 -27.96703 -26.70670 -26.17970 -24.76154 -22.79176 -21.73784 -20.51001 -19.92138 -19.54288 -17.40618 -16.51916 -16.19305 -15.86979 -15.28268 -14.81052 -14.52201 -14.37742 -13.93139 -13.63477 -13.52680 -13.25161 -13.03203 -12.68439 -12.49600 -12.13664 -12.08165 -12.01934 -11.87485 -11.72789 -11.31221 -11.15692 -11.04889 -10.95078 -10.76032 -10.62423 -10.60415 -10.15871 -9.94837 -9.68284 -9.57352 -9.08867 -8.60409 -8.34644 -7.78489 -7.24052 -5.96122 -4.00075 1.40728 1.53303 3.22526 3.33181 3.39899 3.44661 3.78880 4.45454 4.58518 4.74760 4.87906 4.97639 5.01457 5.20096 5.28153 5.29411 5.34890 5.38242 5.53364 5.61749 5.65305 5.67502 5.75841 5.79330 6.06100 6.08265 6.14625 6.15522 6.19859 6.27396 6.38752 6.42452 6.47057 6.52724 6.71299 6.83038 6.87089 6.89185 7.07593 7.16804 7.39964 7.50593 7.77894 7.93388 8.30396 8.40175 8.75154 9.08269 9.65101 11.09181 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.003623 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.597910 B = 7726.102614 C = 8244.122111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.676 5.676 14 C 0.102 3.898 15 H 0.093 0.907 16 C -0.070 4.070 17 C -0.119 4.119 18 C -0.074 4.074 19 C -0.122 4.122 20 C -0.100 4.100 21 C 0.117 3.883 22 O -0.317 6.317 23 C 0.028 3.972 24 C -0.193 4.193 25 C -0.054 4.054 26 C -0.113 4.113 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.259 0.741 33 H 0.319 0.681 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.122 0.878 44 H 0.077 0.923 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.085 12.711 -7.506 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.022 0.978 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.306 5.306 14 C -0.010 4.010 15 H 0.111 0.889 16 C -0.107 4.107 17 C -0.119 4.119 18 C -0.093 4.093 19 C -0.123 4.123 20 C -0.156 4.156 21 C 0.072 3.928 22 O -0.231 6.231 23 C -0.067 4.067 24 C -0.212 4.212 25 C -0.055 4.055 26 C -0.152 4.152 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.140 0.860 44 H 0.095 0.905 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.431 12.800 -7.648 18.197 hybrid contribution -0.089 -0.181 1.032 1.052 sum -10.521 12.618 -6.616 17.711 Atomic orbital electron populations 1.21891 0.99660 0.99617 0.99584 1.21788 0.91171 1.00475 1.03130 1.19177 0.95433 0.89893 0.84356 0.97801 1.21238 0.91283 1.36345 1.04307 0.91993 1.24953 0.98069 0.95645 0.95871 1.69867 1.34691 1.39551 1.09580 0.86561 0.85863 0.77310 0.78048 1.20910 1.21417 1.19883 1.60714 1.37162 1.00620 1.32096 1.22164 0.93016 0.90247 0.95546 0.88923 1.21073 0.97534 0.92807 0.99326 1.20708 0.98311 0.96051 0.96859 1.20323 0.97375 0.92285 0.99267 1.19047 0.96138 0.98614 0.98509 1.20544 1.02551 0.94288 0.98240 1.18585 0.89898 0.88706 0.95598 1.86023 1.39717 1.43349 1.54002 1.23011 0.91529 1.02399 0.89805 1.20640 1.02413 0.94930 1.03230 1.20421 0.93805 0.95331 0.95947 1.22000 0.99948 0.92928 1.00336 0.94413 0.93885 0.94670 0.94046 0.88215 0.93123 0.86202 0.90071 0.90852 0.85700 0.91706 0.91885 0.91494 0.92708 0.88518 0.92809 0.85984 0.90474 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.73 37.16 0.36 -2.46 16 2 C -0.13 -2.92 5.34 -26.73 -0.14 -3.06 16 3 C 0.22 5.26 1.89 -68.86 -0.13 5.13 16 4 H 0.00 0.11 7.82 -51.93 -0.41 -0.29 16 5 C -0.49 -13.35 8.66 -34.44 -0.30 -13.65 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.20 11.29 55.43 0.63 -24.58 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -13.76 6.14 -99.47 -0.61 -14.37 16 14 C 0.10 1.87 3.14 -66.30 -0.21 1.66 16 15 H 0.09 1.93 7.79 -51.93 -0.40 1.52 16 16 C -0.07 -1.11 6.49 -26.84 -0.17 -1.28 16 17 C -0.12 -1.80 6.14 -104.16 -0.64 -2.44 16 18 C -0.07 -1.01 9.69 -39.56 -0.38 -1.39 16 19 C -0.12 -1.61 5.89 -104.52 -0.62 -2.23 16 20 C -0.10 -1.03 9.79 36.00 0.35 -0.68 16 21 C 0.12 1.60 6.66 -39.26 -0.26 1.34 16 22 O -0.32 -3.86 9.55 -19.42 -0.19 -4.05 16 23 C 0.03 0.24 9.81 101.05 0.99 1.23 16 24 C -0.19 -2.71 9.04 -39.38 -0.36 -3.07 16 25 C -0.05 -0.84 6.13 -104.21 -0.64 -1.48 16 26 C -0.11 -1.83 6.45 -26.84 -0.17 -2.01 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.59 6.50 -51.93 -0.34 0.25 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.32 5.96 5.88 -39.29 -0.23 5.73 16 34 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 39 H 0.07 0.68 7.54 -51.93 -0.39 0.29 16 40 H 0.05 0.45 7.65 -51.93 -0.40 0.06 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 43 H 0.12 1.49 6.29 -52.49 -0.33 1.16 16 44 H 0.08 1.20 7.58 -51.93 -0.39 0.81 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 356.01 15.07 5.37 5.37 Total: -1.00 -28.78 356.01 -9.60 -38.38 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.37 Total: 5.91 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -2.41 Total: -22.99 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.02 Total: -38.95 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.19 Total: -4.05 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.78 -9.60 -38.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.491 kcal (2) G-P(sol) polarization free energy of solvation -28.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds