Wall clock time and date at job start Tue Mar 31 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46957 * 2 1 4 4 H 1.08999 * 109.47550 * 54.56078 * 3 2 1 5 5 C 1.50702 * 109.47276 * 174.56452 * 3 2 1 6 6 H 1.07995 * 120.00351 * 119.99514 * 5 3 2 7 7 C 1.37878 * 119.99763 * 300.00349 * 5 3 2 8 8 N 1.31507 * 120.00101 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99651 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47293 * 89.99641 * 9 7 5 11 11 H 1.48501 * 109.47048 * 209.99386 * 9 7 5 12 12 H 1.48493 * 109.47398 * 329.99397 * 9 7 5 13 13 N 1.46904 * 109.47031 * 294.56220 * 3 2 1 14 14 C 1.46903 * 110.99692 * 152.68743 * 13 3 2 15 15 H 1.08999 * 110.73271 * 32.91806 * 14 13 3 16 16 C 1.54345 * 110.81973 * 156.31742 * 14 13 3 17 17 C 1.51386 * 105.17697 * 144.59402 * 16 14 13 18 18 C 1.38544 * 130.32416 * 162.82101 * 17 16 14 19 19 C 1.37999 * 120.29295 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.06453 * 180.02562 * 19 18 17 21 21 C 1.38757 * 119.87801 * 0.02562 * 19 18 17 22 22 O 1.35897 * 120.08945 * 179.97438 * 21 19 18 23 23 C 1.42907 * 116.99813 * 180.02562 * 22 21 19 24 24 C 1.38594 * 119.81366 * 0.25231 * 21 19 18 25 25 C 1.38263 * 109.73957 * 342.80473 * 17 16 14 26 26 C 1.51377 * 109.75503 * 359.97438 * 25 17 16 27 27 H 1.09002 * 109.47118 * 181.28612 * 1 2 3 28 28 H 1.08992 * 109.47484 * 301.29466 * 1 2 3 29 29 H 1.09005 * 109.46899 * 61.29595 * 1 2 3 30 30 H 1.08993 * 109.47119 * 239.99657 * 2 1 3 31 31 H 1.09004 * 109.46714 * 119.99828 * 2 1 3 32 32 H 0.97002 * 120.00190 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00110 * 28.73998 * 13 3 2 34 34 H 1.09004 * 110.29807 * 25.67403 * 16 14 13 35 35 H 1.08997 * 110.30115 * 263.52631 * 16 14 13 36 36 H 1.08003 * 119.85356 * 359.97438 * 18 17 16 37 37 H 1.08993 * 109.47823 * 269.98584 * 20 19 18 38 38 H 1.09007 * 109.46691 * 29.98271 * 20 19 18 39 39 H 1.09002 * 109.47427 * 149.97304 * 20 19 18 40 40 H 1.08996 * 109.46964 * 59.99559 * 23 22 21 41 41 H 1.09000 * 109.47230 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.46676 * 299.99990 * 23 22 21 43 43 H 1.07999 * 119.91141 * 179.74814 * 24 21 19 44 44 H 1.08997 * 110.30626 * 258.27519 * 26 25 17 45 45 H 1.08997 * 110.38539 * 136.16915 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9837 0.8372 5 6 3.5410 1.4447 0.1346 6 1 4.1518 1.8872 -0.6383 7 6 4.1344 0.8815 1.2444 8 7 3.3906 0.3429 2.1857 9 14 5.9950 0.8837 1.4109 10 1 6.4277 2.1184 2.1134 11 1 6.4235 -0.3054 2.1905 12 1 6.6128 0.8396 0.0613 13 7 1.6604 2.0960 -1.2597 14 6 1.5269 3.5479 -1.0801 15 1 2.2340 3.9111 -0.3343 16 6 1.7172 4.2865 -2.4219 17 6 0.7633 5.4607 -2.3667 18 6 0.7235 6.6198 -3.1247 19 6 -0.2526 7.5681 -2.8956 20 6 -0.2915 8.8267 -3.7235 21 6 -1.1982 7.3606 -1.9015 22 8 -2.1610 8.2918 -1.6720 23 6 -3.1004 8.0109 -0.6323 24 6 -1.1545 6.2036 -1.1397 25 6 -0.1780 5.2515 -1.3759 26 6 0.0789 3.9224 -0.6984 27 1 -0.3633 -1.0274 0.0231 28 1 -0.3634 0.5338 0.8781 29 1 -0.3633 0.4936 -0.9014 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8081 -0.0529 2.9667 33 1 0.8111 1.6982 -1.6319 34 1 1.4618 3.6305 -3.2541 35 1 2.7445 4.6378 -2.5178 36 1 1.4595 6.7819 -3.8982 37 1 0.3117 9.5967 -3.2427 38 1 0.1071 8.6205 -4.7169 39 1 -1.3214 9.1730 -3.8100 40 1 -2.5717 7.8967 0.3139 41 1 -3.8124 8.8325 -0.5544 42 1 -3.6338 7.0891 -0.8641 43 1 -1.8873 6.0424 -0.3628 44 1 -0.6170 3.1690 -1.0674 45 1 -0.0126 4.0235 0.3830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:49 Heat of formation + Delta-G solvation = -41.205128 kcal Electronic energy + Delta-G solvation = -23047.919597 eV Core-core repulsion = 19836.121421 eV Total energy + Delta-G solvation = -3211.798176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.57279 -39.76878 -38.00315 -36.07415 -34.05511 -33.01387 -31.86184 -30.27438 -28.85520 -28.32029 -27.46983 -26.00812 -24.55764 -22.82972 -21.71193 -21.54550 -21.04826 -18.45469 -18.20558 -17.58745 -17.03300 -16.69055 -16.16813 -15.97981 -15.76454 -15.16112 -14.94660 -14.69805 -14.53769 -14.28007 -14.13132 -13.76733 -13.57216 -13.34532 -13.14957 -12.97540 -12.92602 -12.84193 -12.68921 -12.54867 -12.34373 -12.33397 -12.13187 -11.96273 -11.65345 -11.51731 -11.42880 -11.25457 -11.01588 -10.41893 -9.66339 -8.97400 -8.85502 -8.05057 -6.16582 0.33491 0.44972 1.41671 1.43072 1.53556 2.37618 2.45218 2.70875 3.19819 3.40572 3.49108 3.85493 3.92691 4.09349 4.20794 4.28553 4.32953 4.36928 4.41712 4.52255 4.57606 4.63060 4.67964 4.70447 4.72973 4.73714 4.80292 4.87135 4.88163 5.01865 5.08570 5.16480 5.20740 5.26341 5.31428 5.34738 5.38519 5.50565 5.63455 5.74900 5.78557 5.85033 5.92736 6.38812 6.44067 6.54359 6.97337 7.01922 7.52516 8.97845 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.003623 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.597910 B = 7726.102614 C = 8244.122111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.227 3.773 4 H -0.027 1.027 5 C -0.511 4.511 6 H 0.050 0.950 7 C 0.010 3.990 8 N -0.919 5.919 9 Si 0.953 3.047 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.675 5.675 14 C 0.098 3.902 15 H 0.059 0.941 16 C -0.059 4.059 17 C -0.133 4.133 18 C -0.075 4.075 19 C -0.128 4.128 20 C -0.097 4.097 21 C 0.112 3.888 22 O -0.324 6.324 23 C 0.019 3.981 24 C -0.199 4.199 25 C -0.072 4.072 26 C -0.102 4.102 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.057 0.943 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.259 0.741 33 H 0.331 0.669 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.147 0.853 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.124 0.876 42 H 0.059 0.941 43 H 0.136 0.864 44 H 0.085 0.915 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.963 13.978 -8.807 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.119 3.881 4 H -0.010 1.010 5 C -0.550 4.550 6 H 0.068 0.932 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.195 1.195 13 N -0.305 5.305 14 C -0.013 4.013 15 H 0.077 0.923 16 C -0.096 4.096 17 C -0.133 4.133 18 C -0.093 4.093 19 C -0.128 4.128 20 C -0.153 4.153 21 C 0.067 3.933 22 O -0.238 6.238 23 C -0.076 4.076 24 C -0.217 4.217 25 C -0.072 4.072 26 C -0.141 4.141 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.150 0.850 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.165 0.835 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.078 0.922 43 H 0.153 0.847 44 H 0.103 0.897 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.327 14.079 -8.960 20.170 hybrid contribution 0.120 -0.488 1.446 1.531 sum -11.207 13.591 -7.514 19.151 Atomic orbital electron populations 1.21756 0.96292 1.01174 1.00417 1.21612 0.94202 0.99061 1.01251 1.18914 0.93846 0.90552 0.84809 1.00982 1.21518 0.92991 1.36321 1.04190 0.93209 1.25649 1.02094 0.95404 0.95645 1.69993 1.36144 1.39995 1.09865 0.85637 0.81081 0.77370 0.78016 1.20556 1.20889 1.19545 1.60605 1.38054 1.01733 1.30156 1.22067 0.93754 0.89074 0.96381 0.92309 1.20896 0.97898 0.93133 0.97718 1.20676 0.98256 0.96577 0.97806 1.20560 0.97871 0.91491 0.99335 1.19448 0.95528 0.99411 0.98430 1.20588 1.02989 0.93044 0.98720 1.18773 0.90345 0.88698 0.95464 1.86023 1.39776 1.42981 1.55011 1.23297 0.91338 1.03971 0.88951 1.20784 1.02395 0.94832 1.03736 1.20363 0.94997 0.95303 0.96572 1.21780 0.98425 0.94127 0.99767 0.92422 0.94462 0.92436 0.94446 0.91431 0.93150 0.84953 0.89512 0.90996 0.83535 0.90923 0.90142 0.91328 0.92546 0.85835 0.92219 0.84653 0.89691 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.73 71.98 0.70 -4.41 16 2 C -0.12 -5.72 5.34 30.59 0.16 -5.55 16 3 C 0.23 11.26 1.89 44.17 0.08 11.34 16 4 H -0.03 -1.51 7.82 -2.39 -0.02 -1.53 16 5 C -0.51 -28.52 8.66 25.60 0.22 -28.30 16 6 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 7 C 0.01 0.56 5.29 84.66 0.45 1.01 16 8 N -0.92 -52.95 11.29 21.45 0.24 -52.70 16 9 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 N -0.67 -27.86 6.14 -468.62 -2.88 -30.73 16 14 C 0.10 3.70 3.14 45.83 0.14 3.84 16 15 H 0.06 2.59 7.79 -2.39 -0.02 2.57 16 16 C -0.06 -1.86 6.49 30.52 0.20 -1.67 16 17 C -0.13 -3.91 6.14 -19.57 -0.12 -4.03 16 18 C -0.07 -1.88 9.69 22.29 0.22 -1.66 16 19 C -0.13 -3.09 5.89 -19.80 -0.12 -3.21 16 20 C -0.10 -1.75 9.79 71.24 0.70 -1.05 16 21 C 0.11 2.88 6.66 22.48 0.15 3.03 16 22 O -0.32 -7.20 9.55 -92.39 -0.88 -8.09 16 23 C 0.02 0.28 9.81 113.37 1.11 1.39 16 24 C -0.20 -5.36 9.04 22.40 0.20 -5.15 16 25 C -0.07 -2.18 6.13 -19.60 -0.12 -2.30 16 26 C -0.10 -3.34 6.45 30.52 0.20 -3.15 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.84 6.50 -2.38 -0.02 1.82 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 3.61 5.94 -2.39 -0.01 3.60 16 32 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.33 12.18 5.88 -89.69 -0.53 11.65 16 34 H 0.09 2.63 8.08 -2.38 -0.02 2.61 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 1.17 8.09 -2.38 -0.02 1.15 16 39 H 0.07 1.22 7.54 -2.39 -0.02 1.20 16 40 H 0.06 0.83 7.65 -2.39 -0.02 0.81 16 41 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 0.83 7.67 -2.39 -0.02 0.81 16 43 H 0.14 3.14 6.29 -2.91 -0.02 3.12 16 44 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -62.82 356.01 3.13 -59.69 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.44 Total: 25.21 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 4.18 Total: -39.85 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -2.64 Total: -83.44 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.88 Total: -8.09 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -62.82 3.13 -59.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.480 kcal (2) G-P(sol) polarization free energy of solvation -62.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds