Wall clock time and date at job start Tue Mar 31 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46935 * 2 1 4 4 H 1.08998 * 109.47115 * 179.80980 * 3 2 1 5 5 C 1.50699 * 109.47412 * 299.81729 * 3 2 1 6 6 H 1.07995 * 120.00561 * 120.00289 * 5 3 2 7 7 C 1.37885 * 119.99617 * 299.99652 * 5 3 2 8 8 N 1.31513 * 119.99715 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46750 * 90.00314 * 9 7 5 11 11 H 1.48500 * 109.47024 * 210.00586 * 9 7 5 12 12 H 1.48496 * 109.46815 * 330.00300 * 9 7 5 13 13 N 1.46904 * 109.47084 * 59.81623 * 3 2 1 14 14 C 1.46896 * 111.00105 * 85.73756 * 13 3 2 15 15 H 1.09000 * 110.88212 * 320.13625 * 14 13 3 16 16 C 1.54339 * 110.82072 * 196.63192 * 14 13 3 17 17 C 1.51391 * 105.17674 * 215.40191 * 16 14 13 18 18 C 1.38550 * 130.32054 * 197.18140 * 17 16 14 19 19 C 1.38004 * 120.28680 * 179.72209 * 18 17 16 20 20 C 1.50702 * 120.06239 * 180.29749 * 19 18 17 21 21 C 1.38752 * 119.87753 * 0.57543 * 19 18 17 22 22 O 1.35896 * 120.09472 * 179.71971 * 21 19 18 23 23 C 1.42898 * 117.00393 * 179.72805 * 22 21 19 24 24 C 1.38592 * 119.81708 * 359.44706 * 21 19 18 25 25 C 1.38253 * 109.74091 * 17.19984 * 17 16 14 26 26 C 1.51386 * 109.75325 * 359.97438 * 25 17 16 27 27 H 1.09004 * 109.47347 * 175.63584 * 1 2 3 28 28 H 1.09003 * 109.46918 * 295.63241 * 1 2 3 29 29 H 1.09003 * 109.47297 * 55.63034 * 1 2 3 30 30 H 1.08994 * 109.46765 * 240.00339 * 2 1 3 31 31 H 1.09004 * 109.46888 * 120.00126 * 2 1 3 32 32 H 0.97006 * 119.99587 * 179.97438 * 8 7 5 33 33 H 1.00899 * 110.99870 * 209.68856 * 13 3 2 34 34 H 1.09003 * 110.30333 * 334.32875 * 16 14 13 35 35 H 1.09006 * 110.30565 * 96.37693 * 16 14 13 36 36 H 1.07998 * 119.85865 * 0.04367 * 18 17 16 37 37 H 1.08998 * 109.47053 * 270.27982 * 20 19 18 38 38 H 1.08997 * 109.47066 * 30.27918 * 20 19 18 39 39 H 1.08996 * 109.47332 * 150.28142 * 20 19 18 40 40 H 1.09008 * 109.47020 * 180.02562 * 23 22 21 41 41 H 1.09003 * 109.46576 * 299.99531 * 23 22 21 42 42 H 1.08998 * 109.47312 * 59.99585 * 23 22 21 43 43 H 1.08002 * 119.91901 * 180.28006 * 24 21 19 44 44 H 1.09005 * 110.29883 * 101.73049 * 26 25 17 45 45 H 1.08998 * 110.30495 * 223.77651 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4425 0.0034 5 6 1.5413 2.1516 -1.2327 6 1 0.9202 3.0298 -1.1365 7 6 1.8783 1.6792 -2.4835 8 7 2.6344 0.6096 -2.6006 9 14 1.2597 2.5578 -4.0115 10 1 2.2386 3.5993 -4.4140 11 1 1.0983 1.5773 -5.1150 12 1 -0.0495 3.1950 -3.7201 13 7 1.5466 2.1363 1.1972 14 6 2.4363 1.9059 2.3433 15 1 2.7875 0.8743 2.3612 16 6 1.7305 2.2682 3.6671 17 6 2.8156 2.8487 4.5489 18 6 2.8459 3.0480 5.9196 19 6 3.9616 3.5966 6.5187 20 6 3.9917 3.8050 8.0109 21 6 5.0532 3.9614 5.7438 22 8 6.1519 4.5073 6.3284 23 6 7.2400 4.8529 5.4691 24 6 5.0224 3.7622 4.3726 25 6 3.9044 3.2060 3.7754 26 6 3.6252 2.8895 2.3216 27 1 -0.3634 -1.0247 -0.0782 28 1 -0.3633 0.4446 0.9266 29 1 -0.3634 0.5802 -0.8483 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.8712 0.2771 -3.4806 33 1 1.4314 3.1231 1.0216 34 1 0.9507 3.0089 3.4897 35 1 1.3056 1.3753 4.1259 36 1 1.9948 2.7680 6.5226 37 1 3.5982 4.7934 8.2478 38 1 3.3800 3.0445 8.4964 39 1 5.0186 3.7277 8.3679 40 1 8.0506 5.2770 6.0618 41 1 7.5950 3.9594 4.9553 42 1 6.9046 5.5852 4.7347 43 1 5.8730 4.0414 3.7685 44 1 3.3547 3.7972 1.7821 45 1 4.4964 2.4227 1.8621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:54 Heat of formation + Delta-G solvation = -26.997150 kcal Electronic energy + Delta-G solvation = -23016.365025 eV Core-core repulsion = 19805.182953 eV Total energy + Delta-G solvation = -3211.182072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52185 -38.64625 -36.50802 -34.66696 -32.38495 -31.35787 -30.45997 -28.91925 -27.99308 -26.75242 -25.90941 -24.66257 -23.16364 -21.84620 -20.65607 -20.04889 -18.90238 -17.40186 -16.71156 -16.16968 -15.86931 -15.22550 -14.85375 -14.43211 -14.34636 -13.82496 -13.60465 -13.49160 -13.39061 -12.86128 -12.54240 -12.48363 -12.20220 -12.09694 -12.04992 -11.84584 -11.76927 -11.24920 -11.15712 -10.97869 -10.93473 -10.71049 -10.59534 -10.43514 -10.16641 -10.04068 -9.67848 -9.37373 -8.78697 -8.61664 -8.48370 -7.80795 -7.25166 -6.03200 -4.08623 1.39384 1.51110 3.21814 3.27833 3.35341 3.38631 3.77023 4.38478 4.56559 4.73300 4.87036 4.97885 5.01943 5.19021 5.26248 5.28472 5.30829 5.37029 5.50204 5.59566 5.63142 5.65971 5.72610 5.77265 6.04711 6.08017 6.16050 6.23998 6.39867 6.41394 6.48609 6.56123 6.60260 6.68824 6.84170 6.86822 6.87535 7.24434 7.33595 7.38800 7.49730 7.74429 7.78757 7.84487 8.26203 8.38461 8.65580 9.00863 9.56260 11.02618 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.003474 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.869350 B = 8057.411955 C = 8768.688873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C 0.216 3.784 4 H 0.002 0.998 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.675 5.675 14 C 0.096 3.904 15 H 0.083 0.917 16 C -0.069 4.069 17 C -0.122 4.122 18 C -0.074 4.074 19 C -0.124 4.124 20 C -0.099 4.099 21 C 0.118 3.882 22 O -0.317 6.317 23 C 0.028 3.972 24 C -0.194 4.194 25 C -0.053 4.053 26 C -0.114 4.114 27 H 0.013 0.987 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.009 0.991 32 H 0.260 0.740 33 H 0.332 0.668 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.123 0.877 44 H 0.082 0.918 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 5.755 16.580 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.020 0.980 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.304 5.304 14 C -0.016 4.016 15 H 0.101 0.899 16 C -0.107 4.107 17 C -0.123 4.123 18 C -0.092 4.092 19 C -0.124 4.124 20 C -0.156 4.156 21 C 0.074 3.926 22 O -0.231 6.231 23 C -0.068 4.068 24 C -0.213 4.213 25 C -0.053 4.053 26 C -0.153 4.153 27 H 0.032 0.968 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.141 0.859 44 H 0.100 0.900 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.680 5.156 16.776 18.164 hybrid contribution 0.771 1.026 -1.488 1.965 sum 5.451 6.182 15.288 17.368 Atomic orbital electron populations 1.21451 0.97518 0.97408 1.01336 1.21450 0.95051 0.98306 0.99420 1.19125 0.93078 0.91414 0.85521 0.97997 1.21184 1.31636 1.11958 0.90361 0.92327 1.24880 0.95058 0.94977 0.98900 1.69885 1.36682 1.22642 1.23485 0.86594 0.79259 0.79340 0.82807 1.20862 1.21259 1.19846 1.60723 1.47812 1.15887 1.05980 1.22188 0.89821 0.98018 0.91561 0.89882 1.21040 0.95760 1.00303 0.93549 1.20667 0.97048 1.01321 0.93217 1.20309 0.96833 0.98594 0.93473 1.19043 0.92763 1.04607 0.96020 1.20541 1.02601 1.01592 0.90871 1.18595 0.87217 0.95921 0.90911 1.86019 1.23970 1.76653 1.36453 1.23020 0.88109 1.00237 0.95405 1.20661 1.00114 1.07257 0.93231 1.20471 0.92875 0.95394 0.96596 1.21998 1.01158 1.00762 0.91348 0.96823 0.93930 0.92523 0.89553 0.97197 0.92972 0.84943 0.89965 0.91035 0.85742 0.91751 0.91880 0.91472 0.88495 0.92717 0.92723 0.85918 0.89978 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.52 37.16 0.35 -2.30 16 2 C -0.10 -2.47 5.57 -26.73 -0.15 -2.62 16 3 C 0.22 5.17 2.17 -68.86 -0.15 5.02 16 4 H 0.00 0.06 7.64 -51.93 -0.40 -0.33 16 5 C -0.51 -13.37 7.26 -34.44 -0.25 -13.62 16 6 H 0.06 1.52 7.61 -52.49 -0.40 1.12 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.72 11.32 55.43 0.63 -24.09 16 9 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.67 -13.48 5.42 -99.50 -0.54 -14.02 16 14 C 0.10 1.67 3.15 -66.32 -0.21 1.46 16 15 H 0.08 1.55 7.31 -51.93 -0.38 1.17 16 16 C -0.07 -1.03 6.49 -26.84 -0.17 -1.21 16 17 C -0.12 -1.79 6.14 -104.16 -0.64 -2.43 16 18 C -0.07 -0.97 9.69 -39.55 -0.38 -1.35 16 19 C -0.12 -1.60 5.89 -104.52 -0.62 -2.22 16 20 C -0.10 -1.01 9.79 36.01 0.35 -0.66 16 21 C 0.12 1.61 6.66 -39.26 -0.26 1.35 16 22 O -0.32 -3.86 9.55 -19.41 -0.19 -4.04 16 23 C 0.03 0.24 9.81 101.05 0.99 1.23 16 24 C -0.19 -2.73 9.04 -39.39 -0.36 -3.08 16 25 C -0.05 -0.81 6.13 -104.21 -0.64 -1.45 16 26 C -0.11 -1.86 6.15 -26.86 -0.17 -2.03 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.04 0.89 7.74 -51.93 -0.40 0.49 16 29 H 0.06 1.35 7.07 -51.93 -0.37 0.98 16 30 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 31 H 0.01 0.21 7.49 -51.93 -0.39 -0.18 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.33 6.56 7.74 -39.29 -0.30 6.25 16 34 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.07 0.68 7.54 -51.93 -0.39 0.29 16 40 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 42 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 43 H 0.12 1.53 6.29 -52.49 -0.33 1.20 16 44 H 0.08 1.37 7.68 -51.93 -0.40 0.97 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 354.66 15.07 5.34 5.34 Total: -1.00 -28.05 354.66 -9.54 -37.60 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.38 Total: 5.69 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -2.39 Total: -22.30 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.09 Total: -38.12 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.19 Total: -4.04 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.05 -9.54 -37.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.598 kcal (2) G-P(sol) polarization free energy of solvation -28.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds