Wall clock time and date at job start Tue Mar 31 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46935 * 2 1 4 4 H 1.08998 * 109.47115 * 179.80980 * 3 2 1 5 5 C 1.50699 * 109.47412 * 299.81729 * 3 2 1 6 6 H 1.07995 * 120.00561 * 120.00289 * 5 3 2 7 7 C 1.37885 * 119.99617 * 299.99652 * 5 3 2 8 8 N 1.31513 * 119.99715 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46750 * 90.00314 * 9 7 5 11 11 H 1.48500 * 109.47024 * 210.00586 * 9 7 5 12 12 H 1.48496 * 109.46815 * 330.00300 * 9 7 5 13 13 N 1.46904 * 109.47084 * 59.81623 * 3 2 1 14 14 C 1.46896 * 111.00105 * 85.73756 * 13 3 2 15 15 H 1.09000 * 110.88212 * 320.13625 * 14 13 3 16 16 C 1.54339 * 110.82072 * 196.63192 * 14 13 3 17 17 C 1.51391 * 105.17674 * 215.40191 * 16 14 13 18 18 C 1.38550 * 130.32054 * 197.18140 * 17 16 14 19 19 C 1.38004 * 120.28680 * 179.72209 * 18 17 16 20 20 C 1.50702 * 120.06239 * 180.29749 * 19 18 17 21 21 C 1.38752 * 119.87753 * 0.57543 * 19 18 17 22 22 O 1.35896 * 120.09472 * 179.71971 * 21 19 18 23 23 C 1.42898 * 117.00393 * 179.72805 * 22 21 19 24 24 C 1.38592 * 119.81708 * 359.44706 * 21 19 18 25 25 C 1.38253 * 109.74091 * 17.19984 * 17 16 14 26 26 C 1.51386 * 109.75325 * 359.97438 * 25 17 16 27 27 H 1.09004 * 109.47347 * 175.63584 * 1 2 3 28 28 H 1.09003 * 109.46918 * 295.63241 * 1 2 3 29 29 H 1.09003 * 109.47297 * 55.63034 * 1 2 3 30 30 H 1.08994 * 109.46765 * 240.00339 * 2 1 3 31 31 H 1.09004 * 109.46888 * 120.00126 * 2 1 3 32 32 H 0.97006 * 119.99587 * 179.97438 * 8 7 5 33 33 H 1.00899 * 110.99870 * 209.68856 * 13 3 2 34 34 H 1.09003 * 110.30333 * 334.32875 * 16 14 13 35 35 H 1.09006 * 110.30565 * 96.37693 * 16 14 13 36 36 H 1.07998 * 119.85865 * 0.04367 * 18 17 16 37 37 H 1.08998 * 109.47053 * 270.27982 * 20 19 18 38 38 H 1.08997 * 109.47066 * 30.27918 * 20 19 18 39 39 H 1.08996 * 109.47332 * 150.28142 * 20 19 18 40 40 H 1.09008 * 109.47020 * 180.02562 * 23 22 21 41 41 H 1.09003 * 109.46576 * 299.99531 * 23 22 21 42 42 H 1.08998 * 109.47312 * 59.99585 * 23 22 21 43 43 H 1.08002 * 119.91901 * 180.28006 * 24 21 19 44 44 H 1.09005 * 110.29883 * 101.73049 * 26 25 17 45 45 H 1.08998 * 110.30495 * 223.77651 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4425 0.0034 5 6 1.5413 2.1516 -1.2327 6 1 0.9202 3.0298 -1.1365 7 6 1.8783 1.6792 -2.4835 8 7 2.6344 0.6096 -2.6006 9 14 1.2597 2.5578 -4.0115 10 1 2.2386 3.5993 -4.4140 11 1 1.0983 1.5773 -5.1150 12 1 -0.0495 3.1950 -3.7201 13 7 1.5466 2.1363 1.1972 14 6 2.4363 1.9059 2.3433 15 1 2.7875 0.8743 2.3612 16 6 1.7305 2.2682 3.6671 17 6 2.8156 2.8487 4.5489 18 6 2.8459 3.0480 5.9196 19 6 3.9616 3.5966 6.5187 20 6 3.9917 3.8050 8.0109 21 6 5.0532 3.9614 5.7438 22 8 6.1519 4.5073 6.3284 23 6 7.2400 4.8529 5.4691 24 6 5.0224 3.7622 4.3726 25 6 3.9044 3.2060 3.7754 26 6 3.6252 2.8895 2.3216 27 1 -0.3634 -1.0247 -0.0782 28 1 -0.3633 0.4446 0.9266 29 1 -0.3634 0.5802 -0.8483 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.8712 0.2771 -3.4806 33 1 1.4314 3.1231 1.0216 34 1 0.9507 3.0089 3.4897 35 1 1.3056 1.3753 4.1259 36 1 1.9948 2.7680 6.5226 37 1 3.5982 4.7934 8.2478 38 1 3.3800 3.0445 8.4964 39 1 5.0186 3.7277 8.3679 40 1 8.0506 5.2770 6.0618 41 1 7.5950 3.9594 4.9553 42 1 6.9046 5.5852 4.7347 43 1 5.8730 4.0414 3.7685 44 1 3.3547 3.7972 1.7821 45 1 4.4964 2.4227 1.8621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:54 Heat of formation + Delta-G solvation = -41.316892 kcal Electronic energy + Delta-G solvation = -23016.985975 eV Core-core repulsion = 19805.182953 eV Total energy + Delta-G solvation = -3211.803022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.57877 -39.77204 -37.96630 -36.10546 -33.97633 -32.82794 -31.88440 -30.23163 -28.90006 -28.15088 -27.33808 -25.92100 -25.02757 -22.93663 -21.98587 -21.20929 -20.68340 -18.46247 -18.31103 -17.49459 -17.01308 -16.72018 -16.08824 -15.93145 -15.58322 -15.21519 -15.02293 -14.72034 -14.40196 -14.24502 -13.89453 -13.84031 -13.71528 -13.66670 -12.98698 -12.95677 -12.85897 -12.80535 -12.60074 -12.45931 -12.35798 -12.25159 -12.14342 -11.93083 -11.62892 -11.51983 -11.33213 -11.25846 -10.76417 -10.51935 -9.66700 -8.96188 -8.86050 -8.08119 -6.19727 0.33146 0.44631 1.41794 1.44179 1.53382 2.36778 2.43458 2.70485 3.20754 3.39788 3.49486 3.86937 3.93574 4.10341 4.19528 4.24172 4.31973 4.34822 4.39682 4.62177 4.67360 4.69367 4.71978 4.73766 4.79283 4.81891 4.87160 4.88787 4.97466 5.01610 5.12123 5.19011 5.30357 5.34133 5.36231 5.47107 5.50698 5.60098 5.73911 5.75153 5.84154 5.86837 5.93520 6.30925 6.42837 6.53266 6.82664 7.06363 7.49001 8.96897 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.003474 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.869350 B = 8057.411955 C = 8768.688873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.101 4.101 3 C 0.224 3.776 4 H -0.032 1.032 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.667 5.667 14 C 0.094 3.906 15 H 0.067 0.933 16 C -0.057 4.057 17 C -0.132 4.132 18 C -0.073 4.073 19 C -0.128 4.128 20 C -0.097 4.097 21 C 0.112 3.888 22 O -0.324 6.324 23 C 0.019 3.981 24 C -0.202 4.202 25 C -0.073 4.073 26 C -0.106 4.106 27 H 0.030 0.970 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.334 0.666 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.124 0.876 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.131 0.869 44 H 0.075 0.925 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.423 6.655 18.402 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C 0.116 3.884 4 H -0.015 1.015 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.182 4.182 8 N -0.556 5.556 9 Si 0.778 3.222 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.296 5.296 14 C -0.018 4.018 15 H 0.085 0.915 16 C -0.094 4.094 17 C -0.132 4.132 18 C -0.090 4.090 19 C -0.128 4.128 20 C -0.153 4.153 21 C 0.067 3.933 22 O -0.238 6.238 23 C -0.075 4.075 24 C -0.221 4.221 25 C -0.073 4.073 26 C -0.145 4.145 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.168 0.832 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.142 0.858 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.149 0.851 44 H 0.093 0.907 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.093 6.071 18.617 20.005 hybrid contribution 1.057 0.770 -1.973 2.367 sum 5.150 6.841 16.644 18.717 Atomic orbital electron populations 1.21311 0.95887 0.98297 1.00990 1.21339 0.96389 0.97868 0.98350 1.18877 0.90930 0.91961 0.86660 1.01489 1.21460 1.31271 1.11926 0.91330 0.92386 1.25603 0.95307 0.95627 1.01667 1.70023 1.37777 1.23901 1.23920 0.85648 0.78899 0.78236 0.79408 1.20489 1.21251 1.19186 1.60654 1.48200 1.15656 1.05118 1.22171 0.90307 0.97421 0.91870 0.91457 1.20879 0.95686 1.00896 0.91939 1.20689 0.96549 1.01962 0.94030 1.20576 0.97742 0.97866 0.92853 1.19471 0.92303 1.03482 0.97589 1.20589 1.03087 1.02789 0.88864 1.18788 0.88050 0.95764 0.90711 1.86016 1.24171 1.76335 1.37249 1.23286 0.87813 1.00533 0.95879 1.20789 1.00075 1.07287 0.93922 1.20382 0.94114 0.97203 0.95645 1.21796 1.00104 0.99971 0.92615 0.95046 0.92696 0.94521 0.92515 0.96325 0.93116 0.84785 0.89598 0.89926 0.83167 0.90725 0.90069 0.91541 0.85761 0.92573 0.92447 0.85099 0.90702 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.52 71.98 0.69 -4.01 16 2 C -0.10 -4.87 5.57 30.59 0.17 -4.70 16 3 C 0.22 11.00 2.17 44.17 0.10 11.09 16 4 H -0.03 -1.79 7.64 -2.39 -0.02 -1.81 16 5 C -0.52 -27.57 7.26 25.60 0.19 -27.39 16 6 H 0.06 3.02 7.61 -2.91 -0.02 2.99 16 7 C 0.02 0.92 5.30 84.66 0.45 1.37 16 8 N -0.92 -52.21 11.32 21.45 0.24 -51.97 16 9 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 N -0.67 -26.89 5.42 -468.71 -2.54 -29.43 16 14 C 0.09 3.29 3.15 45.82 0.14 3.43 16 15 H 0.07 2.58 7.31 -2.39 -0.02 2.56 16 16 C -0.06 -1.63 6.49 30.52 0.20 -1.43 16 17 C -0.13 -3.71 6.14 -19.57 -0.12 -3.83 16 18 C -0.07 -1.73 9.69 22.29 0.22 -1.51 16 19 C -0.13 -3.02 5.89 -19.80 -0.12 -3.14 16 20 C -0.10 -1.68 9.79 71.24 0.70 -0.98 16 21 C 0.11 2.88 6.66 22.48 0.15 3.03 16 22 O -0.32 -7.31 9.55 -92.38 -0.88 -8.19 16 23 C 0.02 0.30 9.81 113.37 1.11 1.42 16 24 C -0.20 -5.58 9.04 22.40 0.20 -5.38 16 25 C -0.07 -2.22 6.13 -19.60 -0.12 -2.34 16 26 C -0.11 -3.59 6.15 30.51 0.19 -3.40 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 2.23 7.74 -2.39 -0.02 2.21 16 29 H 0.04 1.72 7.07 -2.39 -0.02 1.70 16 30 H 0.06 3.10 6.06 -2.39 -0.01 3.08 16 31 H 0.02 0.83 7.49 -2.39 -0.02 0.81 16 32 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 33 H 0.33 13.27 7.74 -89.69 -0.69 12.58 16 34 H 0.09 2.42 8.08 -2.39 -0.02 2.40 16 35 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 39 H 0.07 1.17 7.54 -2.39 -0.02 1.16 16 40 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 42 H 0.06 0.87 7.66 -2.39 -0.02 0.86 16 43 H 0.13 3.24 6.29 -2.91 -0.02 3.22 16 44 H 0.07 2.59 7.68 -2.38 -0.02 2.57 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -60.28 354.66 3.27 -57.01 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.28 Total: 25.28 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 4.14 Total: -37.75 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -2.30 Total: -81.41 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.88 Total: -8.19 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -60.28 3.27 -57.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.693 kcal (2) G-P(sol) polarization free energy of solvation -60.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds