Wall clock time and date at job start Tue Mar 31 2020 05:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52990 * 109.47740 * 2 1 4 4 H 1.09003 * 109.47622 * 305.86090 * 3 2 1 5 5 C 1.50699 * 109.47549 * 185.85520 * 3 2 1 6 6 H 1.07999 * 120.00305 * 243.37171 * 5 3 2 7 7 C 1.37884 * 119.99536 * 63.37478 * 5 3 2 8 8 N 1.31515 * 119.99427 * 197.00819 * 7 5 3 9 9 Si 1.86796 * 120.00005 * 17.00738 * 7 5 3 10 10 H 1.48498 * 109.47067 * 86.47711 * 9 7 5 11 11 H 1.48504 * 109.46755 * 206.47316 * 9 7 5 12 12 H 1.48499 * 109.47323 * 326.47312 * 9 7 5 13 13 N 1.46908 * 109.46802 * 65.85712 * 3 2 1 14 14 C 1.46902 * 110.99984 * 253.15564 * 13 3 2 15 15 H 1.08996 * 109.46921 * 18.52682 * 14 13 3 16 16 C 1.50698 * 109.46916 * 138.52539 * 14 13 3 17 17 C 1.38236 * 120.00044 * 39.72825 * 16 14 13 18 18 C 1.38233 * 119.99861 * 179.76847 * 17 16 14 19 19 C 1.38234 * 120.00100 * 0.50271 * 18 17 16 20 20 C 1.38236 * 120.00033 * 359.74725 * 19 18 17 21 21 C 1.38234 * 120.00052 * 219.99942 * 16 14 13 22 22 C 1.52998 * 109.46969 * 258.52252 * 14 13 3 23 23 O 1.42898 * 112.85314 * 290.15117 * 22 14 13 24 24 C 1.53782 * 113.61593 * 158.84296 * 22 14 13 25 25 C 1.53772 * 87.08373 * 220.02114 * 24 22 14 26 26 C 1.53780 * 87.08457 * 25.43334 * 25 24 22 27 27 H 1.09000 * 109.47922 * 179.30702 * 1 2 3 28 28 H 1.09003 * 109.46849 * 299.30535 * 1 2 3 29 29 H 1.09005 * 109.47064 * 59.30280 * 1 2 3 30 30 H 1.09006 * 109.46832 * 240.00117 * 2 1 3 31 31 H 1.08997 * 109.47000 * 120.00919 * 2 1 3 32 32 H 0.97003 * 119.99513 * 180.02562 * 8 7 5 33 33 H 1.00902 * 110.99767 * 129.20366 * 13 3 2 34 34 H 1.08002 * 119.99896 * 359.97438 * 17 16 14 35 35 H 1.08001 * 120.00195 * 180.22779 * 18 17 16 36 36 H 1.07996 * 119.99972 * 179.72867 * 19 18 17 37 37 H 1.08001 * 120.00209 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99802 * 0.02562 * 21 16 14 39 39 H 0.96696 * 114.00268 * 179.97438 * 23 22 14 40 40 H 1.09005 * 113.61206 * 334.57579 * 24 22 14 41 41 H 1.09005 * 113.61437 * 105.46525 * 24 22 14 42 42 H 1.09006 * 113.61419 * 270.88080 * 25 24 22 43 43 H 1.09008 * 113.61425 * 139.98056 * 25 24 22 44 44 H 1.09000 * 113.61150 * 220.02483 * 26 25 24 45 45 H 1.08996 * 113.61820 * 89.11748 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 1 1.5937 1.9857 -0.8329 5 6 3.5401 1.4448 -0.1449 6 1 4.1587 1.8361 0.6491 7 6 4.1226 0.9473 -1.2914 8 7 5.4004 0.6362 -1.2978 9 14 3.0969 0.7153 -2.8352 10 1 3.0704 1.9837 -3.6071 11 1 3.6935 -0.3591 -3.6690 12 1 1.7117 0.3369 -2.4570 13 7 1.6692 2.0928 1.2639 14 6 0.5831 3.0605 1.0591 15 1 0.0816 2.8493 0.1147 16 6 -0.4074 2.9505 2.1895 17 6 0.0391 2.7574 3.4834 18 6 -0.8693 2.6613 4.5209 19 6 -2.2247 2.7478 4.2631 20 6 -2.6714 2.9357 2.9685 21 6 -1.7628 3.0370 1.9317 22 6 1.1616 4.4765 1.0240 23 8 1.6384 4.9130 2.2984 24 6 0.2498 5.4972 0.3227 25 6 1.5247 6.0914 -0.2985 26 6 2.1640 4.7042 -0.1199 27 1 -0.3635 -1.0275 -0.0124 28 1 -0.3633 0.5030 0.8962 29 1 -0.3633 0.5246 -0.8837 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 5.8104 0.2866 -2.1045 33 1 2.4697 2.5330 1.6925 34 1 1.0978 2.6850 3.6842 35 1 -0.5204 2.5141 5.5323 36 1 -2.9345 2.6683 5.0731 37 1 -3.7303 3.0028 2.7670 38 1 -2.1118 3.1830 0.9201 39 1 2.0082 5.8064 2.2950 40 1 -0.4248 5.0506 -0.4078 41 1 -0.2575 6.1742 1.0102 42 1 1.9872 6.8672 0.3118 43 1 1.4059 6.3864 -1.3412 44 1 3.2021 4.7411 0.2103 45 1 2.0129 4.0408 -0.9714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:37 Heat of formation + Delta-G solvation = -0.920327 kcal Electronic energy + Delta-G solvation = -24612.447402 eV Core-core repulsion = 21402.396106 eV Total energy + Delta-G solvation = -3210.051296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.20058 -38.42205 -36.17678 -34.05522 -32.95454 -31.76235 -30.59566 -30.05882 -27.47366 -25.71242 -25.25382 -22.97136 -22.45830 -22.13567 -20.37352 -19.81535 -19.16982 -17.08252 -16.54925 -16.41267 -15.52938 -15.21183 -14.76158 -14.61528 -14.12610 -13.78111 -13.50110 -13.14803 -13.03686 -12.87423 -12.77336 -12.44897 -12.29803 -12.26984 -11.83912 -11.71272 -11.48854 -11.12712 -10.88438 -10.80331 -10.68961 -10.67273 -10.57191 -10.23871 -10.09253 -9.79067 -9.48842 -9.31379 -9.15264 -8.53438 -8.43568 -8.23696 -7.41087 -6.15787 -4.09448 1.73590 1.82351 3.23661 3.34110 3.36976 4.13076 4.37566 4.38822 4.67575 4.70451 4.92763 5.02931 5.08691 5.17901 5.24017 5.29621 5.47440 5.60765 5.65626 5.79291 5.90372 5.91375 5.98522 6.00138 6.04904 6.12396 6.15556 6.20113 6.31687 6.35418 6.42122 6.48058 6.56727 6.71072 6.79627 6.82774 6.90066 7.04895 7.07953 7.18805 7.39642 7.46548 7.64925 7.84454 8.02428 8.37996 8.59996 8.95015 9.51326 10.97127 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.006423 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.358351 B = 4358.436998 C = 5134.026683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C 0.194 3.806 4 H 0.005 0.995 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.081 3.919 8 N -0.888 5.888 9 Si 0.856 3.144 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.250 1.250 13 N -0.667 5.667 14 C 0.150 3.850 15 H 0.083 0.917 16 C -0.047 4.047 17 C -0.067 4.067 18 C -0.131 4.131 19 C -0.133 4.133 20 C -0.130 4.130 21 C -0.123 4.123 22 C 0.099 3.901 23 O -0.531 6.531 24 C -0.166 4.166 25 C -0.150 4.150 26 C -0.158 4.158 27 H 0.033 0.967 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.263 0.737 33 H 0.349 0.651 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.370 0.630 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 8.656 5.296 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C 0.086 3.914 4 H 0.022 0.978 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.122 4.122 8 N -0.525 5.525 9 Si 0.683 3.317 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.297 5.297 14 C 0.039 3.961 15 H 0.101 0.899 16 C -0.048 4.048 17 C -0.086 4.086 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.142 4.142 22 C 0.057 3.943 23 O -0.335 6.335 24 C -0.204 4.204 25 C -0.188 4.188 26 C -0.196 4.196 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.169 0.831 34 H 0.144 0.856 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.217 0.783 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.216 7.444 5.556 16.153 hybrid contribution 0.253 1.123 -1.696 2.050 sum -12.963 8.567 3.860 16.010 Atomic orbital electron populations 1.21830 0.98597 0.99471 1.00642 1.21885 0.92743 0.99436 1.00786 1.19540 0.95324 0.90756 0.85825 0.97759 1.21242 0.89476 1.42294 1.03847 0.90706 1.24867 0.94639 0.94026 0.98715 1.70001 1.12003 1.42099 1.28353 0.87343 0.82452 0.77978 0.83960 1.20738 1.21467 1.17370 1.60550 1.11795 1.30522 1.26865 1.20554 0.92542 0.87447 0.95561 0.89870 1.19830 0.92964 0.96979 0.95018 1.20946 0.99948 0.95955 0.91701 1.21126 0.93339 1.01500 0.98966 1.20983 0.95669 1.02032 0.96452 1.20929 0.98810 1.02018 0.93091 1.20953 0.92959 1.01660 0.98625 1.22900 0.93814 0.94434 0.83196 1.86519 1.81503 1.35959 1.29519 1.23666 0.97184 0.99275 1.00320 1.22903 0.97225 0.97425 1.01210 1.23650 1.00044 0.96140 0.99776 0.94824 0.92311 0.94763 0.93201 0.92351 0.92701 0.83088 0.85615 0.86867 0.87111 0.87015 0.87066 0.78342 0.89639 0.91272 0.90592 0.91364 0.90216 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.39 37.16 0.35 -2.44 16 2 C -0.11 -2.41 4.90 -26.74 -0.13 -2.54 16 3 C 0.19 4.29 1.08 -68.87 -0.07 4.22 16 4 H 0.00 0.11 4.90 -51.93 -0.25 -0.15 16 5 C -0.53 -13.90 9.03 -34.44 -0.31 -14.21 16 6 H 0.07 2.15 7.62 -52.49 -0.40 1.75 16 7 C 0.08 2.22 5.30 -17.82 -0.09 2.13 16 8 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 9 Si 0.86 20.48 25.83 -169.99 -4.39 16.09 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.25 -5.66 5.52 56.52 0.31 -5.35 16 13 N -0.67 -12.93 4.93 -102.17 -0.50 -13.44 16 14 C 0.15 2.49 1.14 -68.87 -0.08 2.41 16 15 H 0.08 1.43 6.70 -51.93 -0.35 1.09 16 16 C -0.05 -0.74 4.28 -104.63 -0.45 -1.19 16 17 C -0.07 -1.07 8.39 -39.58 -0.33 -1.40 16 18 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 19 C -0.13 -1.73 10.05 -39.58 -0.40 -2.12 16 20 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 21 C -0.12 -1.77 9.67 -39.58 -0.38 -2.15 16 22 C 0.10 1.46 0.77 -89.80 -0.07 1.39 16 23 O -0.53 -7.58 11.98 -35.23 -0.42 -8.00 16 24 C -0.17 -2.10 7.41 -25.92 -0.19 -2.29 16 25 C -0.15 -1.85 7.75 -25.92 -0.20 -2.05 16 26 C -0.16 -2.49 6.81 -25.92 -0.18 -2.66 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.09 6.77 -51.93 -0.35 0.74 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 1.15 4.85 -51.93 -0.25 0.90 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.35 7.17 7.15 -39.29 -0.28 6.88 16 34 H 0.13 2.11 7.66 -52.49 -0.40 1.71 16 35 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.11 1.44 8.04 -52.49 -0.42 1.01 16 39 H 0.37 3.99 8.33 45.56 0.38 4.37 16 40 H 0.09 1.06 7.98 -51.93 -0.41 0.65 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.80 7.80 -51.93 -0.40 0.40 16 43 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.09 1.71 6.89 -51.93 -0.36 1.35 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -28.67 348.53 -9.16 -37.83 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -6.54 Total: 14.90 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: -3.33 Total: -27.23 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.27 Total: -38.84 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.42 Total: -8.00 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.39 Total: 16.09 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.67 -9.16 -37.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.909 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds