Wall clock time and date at job start Tue Mar 31 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52990 * 109.47740 * 2 1 4 4 H 1.09003 * 109.47622 * 305.86090 * 3 2 1 5 5 C 1.50699 * 109.47549 * 185.85520 * 3 2 1 6 6 H 1.07999 * 120.00305 * 243.37171 * 5 3 2 7 7 C 1.37884 * 119.99536 * 63.37478 * 5 3 2 8 8 N 1.31515 * 119.99427 * 197.00819 * 7 5 3 9 9 Si 1.86796 * 120.00005 * 17.00738 * 7 5 3 10 10 H 1.48498 * 109.47067 * 86.47711 * 9 7 5 11 11 H 1.48504 * 109.46755 * 206.47316 * 9 7 5 12 12 H 1.48499 * 109.47323 * 326.47312 * 9 7 5 13 13 N 1.46908 * 109.46802 * 65.85712 * 3 2 1 14 14 C 1.46902 * 110.99984 * 253.15564 * 13 3 2 15 15 H 1.08996 * 109.46921 * 18.52682 * 14 13 3 16 16 C 1.50698 * 109.46916 * 138.52539 * 14 13 3 17 17 C 1.38236 * 120.00044 * 39.72825 * 16 14 13 18 18 C 1.38233 * 119.99861 * 179.76847 * 17 16 14 19 19 C 1.38234 * 120.00100 * 0.50271 * 18 17 16 20 20 C 1.38236 * 120.00033 * 359.74725 * 19 18 17 21 21 C 1.38234 * 120.00052 * 219.99942 * 16 14 13 22 22 C 1.52998 * 109.46969 * 258.52252 * 14 13 3 23 23 O 1.42898 * 112.85314 * 290.15117 * 22 14 13 24 24 C 1.53782 * 113.61593 * 158.84296 * 22 14 13 25 25 C 1.53772 * 87.08373 * 220.02114 * 24 22 14 26 26 C 1.53780 * 87.08457 * 25.43334 * 25 24 22 27 27 H 1.09000 * 109.47922 * 179.30702 * 1 2 3 28 28 H 1.09003 * 109.46849 * 299.30535 * 1 2 3 29 29 H 1.09005 * 109.47064 * 59.30280 * 1 2 3 30 30 H 1.09006 * 109.46832 * 240.00117 * 2 1 3 31 31 H 1.08997 * 109.47000 * 120.00919 * 2 1 3 32 32 H 0.97003 * 119.99513 * 180.02562 * 8 7 5 33 33 H 1.00902 * 110.99767 * 129.20366 * 13 3 2 34 34 H 1.08002 * 119.99896 * 359.97438 * 17 16 14 35 35 H 1.08001 * 120.00195 * 180.22779 * 18 17 16 36 36 H 1.07996 * 119.99972 * 179.72867 * 19 18 17 37 37 H 1.08001 * 120.00209 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99802 * 0.02562 * 21 16 14 39 39 H 0.96696 * 114.00268 * 179.97438 * 23 22 14 40 40 H 1.09005 * 113.61206 * 334.57579 * 24 22 14 41 41 H 1.09005 * 113.61437 * 105.46525 * 24 22 14 42 42 H 1.09006 * 113.61419 * 270.88080 * 25 24 22 43 43 H 1.09008 * 113.61425 * 139.98056 * 25 24 22 44 44 H 1.09000 * 113.61150 * 220.02483 * 26 25 24 45 45 H 1.08996 * 113.61820 * 89.11748 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 1 1.5937 1.9857 -0.8329 5 6 3.5401 1.4448 -0.1449 6 1 4.1587 1.8361 0.6491 7 6 4.1226 0.9473 -1.2914 8 7 5.4004 0.6362 -1.2978 9 14 3.0969 0.7153 -2.8352 10 1 3.0704 1.9837 -3.6071 11 1 3.6935 -0.3591 -3.6690 12 1 1.7117 0.3369 -2.4570 13 7 1.6692 2.0928 1.2639 14 6 0.5831 3.0605 1.0591 15 1 0.0816 2.8493 0.1147 16 6 -0.4074 2.9505 2.1895 17 6 0.0391 2.7574 3.4834 18 6 -0.8693 2.6613 4.5209 19 6 -2.2247 2.7478 4.2631 20 6 -2.6714 2.9357 2.9685 21 6 -1.7628 3.0370 1.9317 22 6 1.1616 4.4765 1.0240 23 8 1.6384 4.9130 2.2984 24 6 0.2498 5.4972 0.3227 25 6 1.5247 6.0914 -0.2985 26 6 2.1640 4.7042 -0.1199 27 1 -0.3635 -1.0275 -0.0124 28 1 -0.3633 0.5030 0.8962 29 1 -0.3633 0.5246 -0.8837 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 5.8104 0.2866 -2.1045 33 1 2.4697 2.5330 1.6925 34 1 1.0978 2.6850 3.6842 35 1 -0.5204 2.5141 5.5323 36 1 -2.9345 2.6683 5.0731 37 1 -3.7303 3.0028 2.7670 38 1 -2.1118 3.1830 0.9201 39 1 2.0082 5.8064 2.2950 40 1 -0.4248 5.0506 -0.4078 41 1 -0.2575 6.1742 1.0102 42 1 1.9872 6.8672 0.3118 43 1 1.4059 6.3864 -1.3412 44 1 3.2021 4.7411 0.2103 45 1 2.0129 4.0408 -0.9714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:36 Heat of formation + Delta-G solvation = -19.231778 kcal Electronic energy + Delta-G solvation = -24613.241446 eV Core-core repulsion = 21402.396106 eV Total energy + Delta-G solvation = -3210.845340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39244 -39.49692 -37.80981 -35.18306 -34.65521 -33.53846 -31.74493 -31.35493 -29.09076 -27.11336 -26.47600 -24.39291 -23.93223 -23.28002 -21.62561 -21.31227 -20.51113 -18.96493 -17.77224 -17.51570 -17.03516 -16.67637 -16.07238 -15.75826 -15.51964 -15.30099 -14.84308 -14.70776 -14.44497 -14.10180 -14.04998 -13.86559 -13.67671 -13.46755 -13.37408 -13.16153 -12.85941 -12.74532 -12.62256 -12.18442 -11.97670 -11.84101 -11.79051 -11.70714 -11.57708 -11.31506 -11.11483 -11.08342 -10.62681 -10.48089 -9.60642 -9.37335 -8.96521 -8.31054 -6.27683 0.66011 0.74643 1.31580 1.35999 1.44726 2.34485 3.00528 3.04436 3.26540 3.49982 3.57414 3.74480 3.88919 3.92280 4.18758 4.29387 4.37541 4.41341 4.48023 4.54126 4.55505 4.66558 4.71756 4.78639 4.82621 4.86861 4.95240 4.97203 5.02175 5.08360 5.16814 5.20690 5.28798 5.31906 5.38301 5.43398 5.46252 5.56485 5.74614 5.79637 5.84919 5.95049 6.12679 6.32923 6.52941 6.71623 6.88689 6.91869 7.36872 8.85507 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.006423 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.358351 B = 4358.436998 C = 5134.026683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.206 3.794 4 H 0.007 0.993 5 C -0.524 4.524 6 H 0.034 0.966 7 C 0.027 3.973 8 N -0.938 5.938 9 Si 0.915 3.085 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.226 1.226 13 N -0.666 5.666 14 C 0.150 3.850 15 H 0.079 0.921 16 C -0.060 4.060 17 C -0.088 4.088 18 C -0.138 4.138 19 C -0.132 4.132 20 C -0.128 4.128 21 C -0.130 4.130 22 C 0.100 3.900 23 O -0.541 6.541 24 C -0.152 4.152 25 C -0.134 4.134 26 C -0.170 4.170 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.263 0.737 33 H 0.338 0.662 34 H 0.103 0.897 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.385 0.615 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.597 9.684 5.199 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.096 3.904 4 H 0.025 0.975 5 C -0.562 4.562 6 H 0.052 0.948 7 C -0.172 4.172 8 N -0.578 5.578 9 Si 0.740 3.260 10 H -0.201 1.201 11 H -0.218 1.218 12 H -0.149 1.149 13 N -0.295 5.295 14 C 0.039 3.961 15 H 0.097 0.903 16 C -0.061 4.061 17 C -0.107 4.107 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.146 4.146 21 C -0.149 4.149 22 C 0.058 3.942 23 O -0.348 6.348 24 C -0.190 4.190 25 C -0.171 4.171 26 C -0.209 4.209 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.156 0.844 34 H 0.122 0.878 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.144 0.856 39 H 0.234 0.766 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.066 8.494 5.471 19.832 hybrid contribution 1.488 0.827 -1.515 2.279 sum -15.577 9.321 3.957 18.579 Atomic orbital electron populations 1.21700 0.95590 1.00910 1.01205 1.21825 0.95415 0.98408 0.99403 1.19340 0.92293 0.91590 0.87175 0.97514 1.21476 0.91626 1.40708 1.02425 0.94803 1.25653 0.95617 0.94057 1.01901 1.70138 1.14116 1.44296 1.29232 0.86375 0.81922 0.77949 0.79800 1.20056 1.21773 1.14910 1.60523 1.11909 1.31893 1.25201 1.20562 0.91689 0.87833 0.95969 0.90262 1.19732 0.93514 0.98483 0.94345 1.20879 0.99334 0.97791 0.92680 1.21343 0.93886 1.01187 0.99186 1.21345 0.95508 1.00613 0.97499 1.21299 1.00123 1.00486 0.92652 1.21157 0.92287 1.01499 0.99913 1.22788 0.94055 0.94373 0.83019 1.86494 1.81740 1.37318 1.29246 1.23571 0.96995 0.98353 1.00112 1.22877 0.96295 0.95678 1.02273 1.23622 0.99151 0.98585 0.99496 0.92972 0.92161 0.93712 0.94399 0.94002 0.92763 0.84367 0.87842 0.85469 0.84268 0.84097 0.85632 0.76619 0.89105 0.89760 0.88493 0.90484 0.92751 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 9.39 71.98 0.68 -4.16 16 2 C -0.11 -4.87 4.90 30.59 0.15 -4.72 16 3 C 0.21 9.23 1.08 44.16 0.05 9.28 16 4 H 0.01 0.33 4.90 -2.39 -0.01 0.31 16 5 C -0.52 -28.78 9.03 25.60 0.23 -28.55 16 6 H 0.03 2.09 7.62 -2.91 -0.02 2.07 16 7 C 0.03 1.50 5.30 84.66 0.45 1.95 16 8 N -0.94 -57.78 13.96 21.45 0.30 -57.48 16 9 Si 0.92 42.75 25.83 68.60 1.77 44.52 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.23 -9.63 5.52 99.48 0.55 -9.08 16 13 N -0.67 -26.57 4.93 -477.16 -2.35 -28.92 16 14 C 0.15 4.91 1.14 44.17 0.05 4.96 16 15 H 0.08 2.63 6.70 -2.39 -0.02 2.62 16 16 C -0.06 -1.81 4.28 -19.87 -0.08 -1.90 16 17 C -0.09 -2.76 8.39 22.27 0.19 -2.58 16 18 C -0.14 -3.62 10.05 22.27 0.22 -3.39 16 19 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 20 C -0.13 -2.83 10.05 22.27 0.22 -2.61 16 21 C -0.13 -3.34 9.67 22.27 0.22 -3.13 16 22 C 0.10 2.90 0.77 -10.27 -0.01 2.90 16 23 O -0.54 -15.36 11.98 -148.98 -1.79 -17.15 16 24 C -0.15 -3.46 7.41 31.12 0.23 -3.23 16 25 C -0.13 -3.04 7.75 31.12 0.24 -2.80 16 26 C -0.17 -5.43 6.81 31.12 0.21 -5.22 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 2.12 6.77 -2.39 -0.02 2.10 16 29 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.04 1.72 4.85 -2.38 -0.01 1.70 16 31 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.34 14.75 7.15 -89.69 -0.64 14.10 16 34 H 0.10 3.62 7.66 -2.91 -0.02 3.59 16 35 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 36 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.13 2.80 8.04 -2.91 -0.02 2.78 16 39 H 0.38 7.99 8.33 -74.06 -0.62 7.37 16 40 H 0.09 1.99 7.98 -2.38 -0.02 1.97 16 41 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.10 1.80 7.80 -2.38 -0.02 1.78 16 43 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.07 2.54 6.89 -2.39 -0.02 2.52 16 Total: -1.00 -64.50 348.53 0.77 -63.72 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: -0.43 Total: 41.23 kcal Atomic # 6 Polarization: -49.20 SS G_CDS: 3.27 Total: -45.93 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -2.05 Total: -86.40 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -1.79 Total: -17.15 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.77 Total: 44.52 kcal Total: -64.50 0.77 -63.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.491 kcal (2) G-P(sol) polarization free energy of solvation -64.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds