Wall clock time and date at job start Tue Mar 31 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47534 * 2 1 4 4 H 1.09003 * 109.46284 * 54.38426 * 3 2 1 5 5 C 1.50699 * 109.47140 * 174.37986 * 3 2 1 6 6 H 1.08003 * 119.99227 * 120.00369 * 5 3 2 7 7 C 1.37868 * 120.00507 * 300.00431 * 5 3 2 8 8 N 1.31517 * 119.99911 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00213 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47154 * 89.99674 * 9 7 5 11 11 H 1.48495 * 109.47095 * 210.00100 * 9 7 5 12 12 H 1.48499 * 109.47157 * 330.00118 * 9 7 5 13 13 N 1.46894 * 109.47175 * 294.38804 * 3 2 1 14 14 C 1.46894 * 111.00102 * 152.36679 * 13 3 2 15 15 H 1.08998 * 109.47204 * 331.00385 * 14 13 3 16 16 C 1.50700 * 109.47575 * 91.00570 * 14 13 3 17 17 C 1.38233 * 119.99856 * 39.72294 * 16 14 13 18 18 C 1.38237 * 119.99984 * 179.76582 * 17 16 14 19 19 C 1.38229 * 119.99742 * 0.51569 * 18 17 16 20 20 C 1.38238 * 120.00304 * 359.74166 * 19 18 17 21 21 C 1.38234 * 119.99972 * 220.00034 * 16 14 13 22 22 C 1.52999 * 109.47314 * 211.00737 * 14 13 3 23 23 O 1.42906 * 112.90682 * 290.33351 * 22 14 13 24 24 C 1.53788 * 113.61564 * 61.58056 * 22 14 13 25 25 C 1.53785 * 87.07833 * 139.98499 * 24 22 14 26 26 C 1.53778 * 87.08340 * 334.56729 * 25 24 22 27 27 H 1.08999 * 109.47277 * 65.44615 * 1 2 3 28 28 H 1.08998 * 109.47067 * 185.44876 * 1 2 3 29 29 H 1.09007 * 109.46953 * 305.44956 * 1 2 3 30 30 H 1.09007 * 109.47101 * 240.00109 * 2 1 3 31 31 H 1.09002 * 109.47563 * 120.00869 * 2 1 3 32 32 H 0.97008 * 119.99830 * 180.02562 * 8 7 5 33 33 H 1.00900 * 111.00396 * 28.40743 * 13 3 2 34 34 H 1.08004 * 119.99949 * 0.02562 * 17 16 14 35 35 H 1.07997 * 119.99703 * 180.22966 * 18 17 16 36 36 H 1.08006 * 119.99792 * 179.72338 * 19 18 17 37 37 H 1.07996 * 120.00325 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00347 * 0.02562 * 21 16 14 39 39 H 0.96698 * 113.99881 * 181.58147 * 23 22 14 40 40 H 1.09001 * 113.60987 * 25.43729 * 24 22 14 41 41 H 1.08994 * 113.61717 * 254.53184 * 24 22 14 42 42 H 1.08996 * 113.61264 * 89.12207 * 25 24 22 43 43 H 1.09003 * 113.61269 * 220.02272 * 25 24 22 44 44 H 1.09000 * 113.61386 * 139.97585 * 26 25 24 45 45 H 1.08995 * 113.61855 * 270.88228 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5969 1.9844 0.8355 5 6 3.5406 1.4447 0.1391 6 1 4.1537 1.8865 -0.6324 7 6 4.1307 0.8827 1.2512 8 7 3.3841 0.3442 2.1905 9 14 5.9907 0.8861 1.4240 10 1 6.4203 2.1215 2.1271 11 1 6.4174 -0.3022 2.2056 12 1 6.6131 0.8417 0.0764 13 7 1.6642 2.0948 -1.2613 14 6 1.5229 3.5459 -1.0819 15 1 1.2195 3.7573 -0.0566 16 6 2.8419 4.2179 -1.3643 17 6 3.6313 3.7786 -2.4105 18 6 4.8390 4.3981 -2.6726 19 6 5.2621 5.4500 -1.8817 20 6 4.4751 5.8858 -0.8321 21 6 3.2649 5.2698 -0.5735 22 6 0.4623 4.0783 -2.0475 23 8 0.8831 4.0393 -3.4127 24 6 -0.9362 3.4815 -1.8168 25 6 -1.4949 4.8889 -2.0849 26 6 -0.1319 5.4322 -1.6246 27 1 -0.3634 0.4270 -0.9347 28 1 -0.3633 -1.0230 0.0976 29 1 -0.3633 0.5961 0.8372 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 3.7993 -0.0508 2.9732 33 1 0.8189 1.6930 -1.6384 34 1 3.3027 2.9541 -3.0258 35 1 5.4540 4.0573 -3.4923 36 1 6.2077 5.9311 -2.0837 37 1 4.8058 6.7073 -0.2140 38 1 2.6504 5.6098 0.2470 39 1 0.2338 4.3948 -4.0347 40 1 -1.0996 3.1338 -0.7967 41 1 -1.2264 2.7462 -2.5672 42 1 -1.7090 5.0807 -3.1363 43 1 -2.3193 5.1640 -1.4270 44 1 0.2272 6.2716 -2.2200 45 1 -0.0755 5.6179 -0.5521 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:39 Heat of formation + Delta-G solvation = -2.380958 kcal Electronic energy + Delta-G solvation = -24597.024607 eV Core-core repulsion = 21386.909974 eV Total energy + Delta-G solvation = -3210.114634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13114 -38.17136 -36.03350 -34.09993 -32.83311 -31.53289 -30.17797 -29.49031 -27.20803 -25.85604 -25.17516 -22.99192 -22.49884 -21.78561 -20.20833 -19.56658 -19.22673 -16.66305 -16.40312 -16.02197 -15.58290 -14.84376 -14.80623 -14.47336 -14.14297 -13.71200 -13.30116 -12.99618 -12.88498 -12.71004 -12.63507 -12.51092 -12.15610 -11.94555 -11.75152 -11.56924 -11.16870 -10.98562 -10.86668 -10.79143 -10.61353 -10.57618 -10.31267 -10.04509 -9.85244 -9.66851 -9.54712 -9.41790 -9.00075 -8.27086 -8.14508 -7.84571 -7.21057 -5.88521 -3.89849 2.11022 2.21520 3.38917 3.44762 3.51264 4.31418 4.49065 4.53826 4.55733 4.59916 4.85306 4.92318 5.26359 5.41856 5.55219 5.56480 5.65170 5.73008 5.76190 5.84456 5.86471 5.87717 6.00078 6.04232 6.14745 6.16582 6.20871 6.27033 6.37575 6.40587 6.42475 6.69483 6.82568 6.85053 7.07265 7.14142 7.19942 7.27021 7.41719 7.58836 7.76721 7.82759 7.87992 8.03851 8.35392 8.45797 8.81526 9.19517 9.74713 11.17241 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012687 B = 0.007914 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.536618 B = 3537.168718 C = 5116.195016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.480 4.480 6 H 0.066 0.934 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.672 5.672 14 C 0.157 3.843 15 H 0.058 0.942 16 C -0.034 4.034 17 C -0.052 4.052 18 C -0.138 4.138 19 C -0.134 4.134 20 C -0.134 4.134 21 C -0.119 4.119 22 C 0.120 3.880 23 O -0.521 6.521 24 C -0.172 4.172 25 C -0.145 4.145 26 C -0.167 4.167 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.257 0.743 33 H 0.323 0.677 34 H 0.128 0.872 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.365 0.635 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 9.266 -8.145 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.519 4.519 6 H 0.085 0.915 7 C -0.145 4.145 8 N -0.541 5.541 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.304 5.304 14 C 0.047 3.953 15 H 0.076 0.924 16 C -0.035 4.035 17 C -0.070 4.070 18 C -0.156 4.156 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.137 4.137 22 C 0.078 3.922 23 O -0.325 6.325 24 C -0.210 4.210 25 C -0.183 4.183 26 C -0.205 4.205 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.211 0.789 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.243 8.917 -7.923 13.463 hybrid contribution -0.286 0.235 0.649 0.747 sum -6.528 9.152 -7.274 13.390 Atomic orbital electron populations 1.21888 0.99746 0.99686 0.99380 1.21799 0.91081 1.00568 1.03149 1.19275 0.95741 0.89823 0.83841 0.98162 1.21283 0.91142 1.35339 1.04124 0.91539 1.24914 0.97688 0.95902 0.96044 1.69872 1.34446 1.40157 1.09661 0.86633 0.86462 0.77147 0.78054 1.20991 1.21586 1.19901 1.60610 1.37928 0.99978 1.31887 1.20288 0.90179 0.90362 0.94478 0.92411 1.19536 0.95692 0.93791 0.94450 1.20884 0.92487 0.97362 0.96284 1.21080 0.97276 0.97148 1.00122 1.20910 0.99240 0.98299 0.96750 1.20845 0.95350 1.00667 0.98331 1.20887 0.96647 0.97094 0.99107 1.22452 0.92095 0.94194 0.83445 1.86668 1.45542 1.85445 1.14798 1.23731 0.97150 0.97011 1.03139 1.22850 0.97432 0.96844 1.01157 1.23700 0.96050 0.98316 1.02479 0.94694 0.94434 0.93987 0.94053 0.88175 0.93332 0.85825 0.85442 0.87270 0.87487 0.87343 0.87419 0.78911 0.89234 0.90693 0.90386 0.91218 0.90908 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.66 37.16 0.36 -2.46 16 2 C -0.13 -2.95 5.34 -26.73 -0.14 -3.09 16 3 C 0.22 5.32 2.02 -68.87 -0.14 5.18 16 4 H 0.00 0.02 7.32 -51.93 -0.38 -0.36 16 5 C -0.48 -13.11 8.22 -34.44 -0.28 -13.40 16 6 H 0.07 1.88 6.49 -52.48 -0.34 1.54 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.71 11.29 55.43 0.63 -25.08 16 9 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 10 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.67 -13.73 5.40 -102.18 -0.55 -14.29 16 14 C 0.16 2.88 1.91 -68.87 -0.13 2.75 16 15 H 0.06 1.14 6.98 -51.93 -0.36 0.78 16 16 C -0.03 -0.65 3.91 -104.63 -0.41 -1.06 16 17 C -0.05 -1.02 7.39 -39.58 -0.29 -1.31 16 18 C -0.14 -2.48 10.05 -39.58 -0.40 -2.88 16 19 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 20 C -0.13 -2.30 10.05 -39.58 -0.40 -2.69 16 21 C -0.12 -2.18 9.67 -39.58 -0.38 -2.57 16 22 C 0.12 1.71 0.99 -89.80 -0.09 1.62 16 23 O -0.52 -7.38 12.21 -35.23 -0.43 -7.81 16 24 C -0.17 -2.13 6.41 -25.91 -0.17 -2.30 16 25 C -0.15 -1.47 7.75 -25.92 -0.20 -1.67 16 26 C -0.17 -2.01 7.40 -25.92 -0.19 -2.20 16 27 H 0.03 0.58 6.65 -51.93 -0.35 0.24 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.32 6.10 5.22 -39.29 -0.21 5.90 16 34 H 0.13 2.61 7.66 -52.48 -0.40 2.21 16 35 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.81 8.04 -52.49 -0.42 1.39 16 39 H 0.37 3.62 8.32 45.56 0.38 4.00 16 40 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 0.66 7.79 -51.93 -0.40 0.25 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.09 7.99 -51.93 -0.41 0.68 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -29.67 353.70 -9.97 -39.64 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -6.57 Total: 12.30 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -3.36 Total: -27.33 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.07 Total: -39.37 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.43 Total: -7.81 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.67 -9.97 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.258 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds