Wall clock time and date at job start Tue Mar 31 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47534 * 2 1 4 4 H 1.09003 * 109.46284 * 54.38426 * 3 2 1 5 5 C 1.50699 * 109.47140 * 174.37986 * 3 2 1 6 6 H 1.08003 * 119.99227 * 120.00369 * 5 3 2 7 7 C 1.37868 * 120.00507 * 300.00431 * 5 3 2 8 8 N 1.31517 * 119.99911 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00213 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47154 * 89.99674 * 9 7 5 11 11 H 1.48495 * 109.47095 * 210.00100 * 9 7 5 12 12 H 1.48499 * 109.47157 * 330.00118 * 9 7 5 13 13 N 1.46894 * 109.47175 * 294.38804 * 3 2 1 14 14 C 1.46894 * 111.00102 * 152.36679 * 13 3 2 15 15 H 1.08998 * 109.47204 * 331.00385 * 14 13 3 16 16 C 1.50700 * 109.47575 * 91.00570 * 14 13 3 17 17 C 1.38233 * 119.99856 * 39.72294 * 16 14 13 18 18 C 1.38237 * 119.99984 * 179.76582 * 17 16 14 19 19 C 1.38229 * 119.99742 * 0.51569 * 18 17 16 20 20 C 1.38238 * 120.00304 * 359.74166 * 19 18 17 21 21 C 1.38234 * 119.99972 * 220.00034 * 16 14 13 22 22 C 1.52999 * 109.47314 * 211.00737 * 14 13 3 23 23 O 1.42906 * 112.90682 * 290.33351 * 22 14 13 24 24 C 1.53788 * 113.61564 * 61.58056 * 22 14 13 25 25 C 1.53785 * 87.07833 * 139.98499 * 24 22 14 26 26 C 1.53778 * 87.08340 * 334.56729 * 25 24 22 27 27 H 1.08999 * 109.47277 * 65.44615 * 1 2 3 28 28 H 1.08998 * 109.47067 * 185.44876 * 1 2 3 29 29 H 1.09007 * 109.46953 * 305.44956 * 1 2 3 30 30 H 1.09007 * 109.47101 * 240.00109 * 2 1 3 31 31 H 1.09002 * 109.47563 * 120.00869 * 2 1 3 32 32 H 0.97008 * 119.99830 * 180.02562 * 8 7 5 33 33 H 1.00900 * 111.00396 * 28.40743 * 13 3 2 34 34 H 1.08004 * 119.99949 * 0.02562 * 17 16 14 35 35 H 1.07997 * 119.99703 * 180.22966 * 18 17 16 36 36 H 1.08006 * 119.99792 * 179.72338 * 19 18 17 37 37 H 1.07996 * 120.00325 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00347 * 0.02562 * 21 16 14 39 39 H 0.96698 * 113.99881 * 181.58147 * 23 22 14 40 40 H 1.09001 * 113.60987 * 25.43729 * 24 22 14 41 41 H 1.08994 * 113.61717 * 254.53184 * 24 22 14 42 42 H 1.08996 * 113.61264 * 89.12207 * 25 24 22 43 43 H 1.09003 * 113.61269 * 220.02272 * 25 24 22 44 44 H 1.09000 * 113.61386 * 139.97585 * 26 25 24 45 45 H 1.08995 * 113.61855 * 270.88228 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5969 1.9844 0.8355 5 6 3.5406 1.4447 0.1391 6 1 4.1537 1.8865 -0.6324 7 6 4.1307 0.8827 1.2512 8 7 3.3841 0.3442 2.1905 9 14 5.9907 0.8861 1.4240 10 1 6.4203 2.1215 2.1271 11 1 6.4174 -0.3022 2.2056 12 1 6.6131 0.8417 0.0764 13 7 1.6642 2.0948 -1.2613 14 6 1.5229 3.5459 -1.0819 15 1 1.2195 3.7573 -0.0566 16 6 2.8419 4.2179 -1.3643 17 6 3.6313 3.7786 -2.4105 18 6 4.8390 4.3981 -2.6726 19 6 5.2621 5.4500 -1.8817 20 6 4.4751 5.8858 -0.8321 21 6 3.2649 5.2698 -0.5735 22 6 0.4623 4.0783 -2.0475 23 8 0.8831 4.0393 -3.4127 24 6 -0.9362 3.4815 -1.8168 25 6 -1.4949 4.8889 -2.0849 26 6 -0.1319 5.4322 -1.6246 27 1 -0.3634 0.4270 -0.9347 28 1 -0.3633 -1.0230 0.0976 29 1 -0.3633 0.5961 0.8372 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 3.7993 -0.0508 2.9732 33 1 0.8189 1.6930 -1.6384 34 1 3.3027 2.9541 -3.0258 35 1 5.4540 4.0573 -3.4923 36 1 6.2077 5.9311 -2.0837 37 1 4.8058 6.7073 -0.2140 38 1 2.6504 5.6098 0.2470 39 1 0.2338 4.3948 -4.0347 40 1 -1.0996 3.1338 -0.7967 41 1 -1.2264 2.7462 -2.5672 42 1 -1.7090 5.0807 -3.1363 43 1 -2.3193 5.1640 -1.4270 44 1 0.2272 6.2716 -2.2200 45 1 -0.0755 5.6179 -0.5521 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:38 Heat of formation + Delta-G solvation = -20.372230 kcal Electronic energy + Delta-G solvation = -24597.804767 eV Core-core repulsion = 21386.909974 eV Total energy + Delta-G solvation = -3210.894794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30212 -39.47528 -37.76804 -35.14288 -34.58820 -33.37257 -31.58622 -31.01105 -28.92056 -27.13882 -26.48855 -24.57995 -23.94723 -23.20323 -21.59553 -21.26075 -20.43545 -18.33880 -17.72670 -17.48554 -16.90591 -16.69895 -16.12588 -15.87633 -15.68565 -15.20827 -14.78314 -14.60969 -14.12094 -14.06230 -13.93535 -13.83414 -13.50877 -13.45265 -13.13950 -13.12103 -13.03278 -12.72656 -12.54091 -12.12098 -11.95482 -11.79525 -11.74911 -11.71524 -11.53028 -11.50023 -11.06204 -10.82513 -10.54746 -10.38439 -9.56269 -9.26602 -8.95059 -8.01916 -6.09155 0.70618 0.80212 1.37162 1.38821 1.49056 2.45453 3.08556 3.23009 3.31910 3.46121 3.55040 3.75299 3.91175 4.01210 4.24375 4.29280 4.39619 4.47014 4.53068 4.57506 4.59511 4.73473 4.75914 4.76999 4.83645 4.88162 4.98290 5.05249 5.05984 5.11385 5.12340 5.23266 5.32640 5.39018 5.42296 5.46165 5.61652 5.75741 5.80871 5.84658 5.95764 6.06887 6.37768 6.43890 6.58941 6.99585 7.05431 7.06547 7.58366 9.01416 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012687 B = 0.007914 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.536618 B = 3537.168718 C = 5116.195016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.231 3.769 4 H -0.032 1.032 5 C -0.487 4.487 6 H 0.053 0.947 7 C 0.010 3.990 8 N -0.921 5.921 9 Si 0.939 3.061 10 H -0.283 1.283 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.670 5.670 14 C 0.156 3.844 15 H 0.036 0.964 16 C -0.048 4.048 17 C -0.072 4.072 18 C -0.147 4.147 19 C -0.137 4.137 20 C -0.136 4.136 21 C -0.139 4.139 22 C 0.118 3.882 23 O -0.537 6.537 24 C -0.173 4.173 25 C -0.125 4.125 26 C -0.165 4.165 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.256 0.744 33 H 0.331 0.669 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.114 0.886 39 H 0.385 0.615 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 10.469 -9.342 16.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.123 3.877 4 H -0.015 1.015 5 C -0.526 4.526 6 H 0.071 0.929 7 C -0.187 4.187 8 N -0.563 5.563 9 Si 0.766 3.234 10 H -0.209 1.209 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.302 5.302 14 C 0.045 3.955 15 H 0.054 0.946 16 C -0.049 4.049 17 C -0.091 4.091 18 C -0.165 4.165 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.158 4.158 22 C 0.076 3.924 23 O -0.343 6.343 24 C -0.211 4.211 25 C -0.162 4.162 26 C -0.203 4.203 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.151 0.849 34 H 0.129 0.871 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.132 0.868 39 H 0.234 0.766 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.728 10.129 -9.141 15.212 hybrid contribution -0.102 -0.102 0.988 0.998 sum -6.830 10.028 -8.153 14.617 Atomic orbital electron populations 1.21737 0.96252 1.01063 1.00407 1.21621 0.94241 0.99219 1.01114 1.18984 0.94005 0.90392 0.84333 1.01472 1.21502 0.92813 1.34703 1.03623 0.92915 1.25525 1.01048 0.96031 0.96079 1.69989 1.35579 1.40802 1.09938 0.85842 0.82561 0.77176 0.77808 1.20906 1.20941 1.19959 1.60451 1.38576 1.01441 1.29711 1.20283 0.91524 0.88876 0.94795 0.94576 1.19692 0.96105 0.94349 0.94720 1.20837 0.93693 0.97714 0.96814 1.21378 0.96883 0.97345 1.00867 1.21283 1.00310 0.97814 0.96108 1.21228 0.94667 1.00979 0.98527 1.21130 0.97685 0.97501 0.99457 1.22319 0.91192 0.95913 0.82998 1.86613 1.46855 1.85904 1.14952 1.23705 0.95974 0.98763 1.02619 1.22809 0.96393 0.94126 1.02862 1.23662 0.97204 0.97255 1.02165 0.92429 0.92559 0.94443 0.94717 0.91424 0.93446 0.84905 0.87141 0.85437 0.84401 0.84644 0.86817 0.76629 0.90597 0.89872 0.87883 0.90022 0.90332 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.66 71.98 0.70 -4.38 16 2 C -0.12 -5.82 5.34 30.59 0.16 -5.65 16 3 C 0.23 11.52 2.02 44.17 0.09 11.61 16 4 H -0.03 -1.79 7.32 -2.39 -0.02 -1.81 16 5 C -0.49 -27.36 8.22 25.60 0.21 -27.15 16 6 H 0.05 3.06 6.49 -2.91 -0.02 3.04 16 7 C 0.01 0.59 5.29 84.65 0.45 1.03 16 8 N -0.92 -53.89 11.29 21.44 0.24 -53.65 16 9 Si 0.94 46.20 29.54 68.60 2.03 48.23 16 10 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 13 N -0.67 -27.95 5.40 -477.18 -2.58 -30.52 16 14 C 0.16 5.82 1.91 44.17 0.08 5.90 16 15 H 0.04 1.50 6.98 -2.39 -0.02 1.48 16 16 C -0.05 -1.87 3.91 -19.87 -0.08 -1.95 16 17 C -0.07 -2.85 7.39 22.27 0.16 -2.69 16 18 C -0.15 -5.15 10.05 22.27 0.22 -4.93 16 19 C -0.14 -4.40 10.05 22.27 0.22 -4.18 16 20 C -0.14 -4.48 10.05 22.27 0.22 -4.25 16 21 C -0.14 -5.12 9.67 22.27 0.22 -4.90 16 22 C 0.12 3.26 0.99 -10.26 -0.01 3.25 16 23 O -0.54 -14.56 12.21 -148.98 -1.82 -16.38 16 24 C -0.17 -4.00 6.41 31.12 0.20 -3.80 16 25 C -0.12 -2.16 7.75 31.12 0.24 -1.92 16 26 C -0.16 -3.73 7.40 31.12 0.23 -3.50 16 27 H 0.06 1.85 6.65 -2.39 -0.02 1.83 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.07 3.66 5.94 -2.39 -0.01 3.64 16 32 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 33 H 0.33 12.52 5.22 -89.69 -0.47 12.05 16 34 H 0.11 4.65 7.66 -2.91 -0.02 4.63 16 35 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 36 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 38 H 0.11 3.89 8.04 -2.91 -0.02 3.87 16 39 H 0.38 6.74 8.32 -74.06 -0.62 6.12 16 40 H 0.08 1.97 8.10 -2.39 -0.02 1.95 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.10 1.31 7.79 -2.39 -0.02 1.29 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 45 H 0.08 1.95 7.99 -2.39 -0.02 1.93 16 Total: -1.00 -65.47 353.70 1.09 -64.38 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -0.11 Total: 35.45 kcal Atomic # 6 Polarization: -50.83 SS G_CDS: 3.32 Total: -47.50 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -2.33 Total: -84.17 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -1.82 Total: -16.38 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -65.47 1.09 -64.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.005 kcal (2) G-P(sol) polarization free energy of solvation -65.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds