Wall clock time and date at job start Tue Mar 31 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.46795 * 2 1 4 4 H 1.08997 * 109.47492 * 303.59608 * 3 2 1 5 5 C 1.50698 * 109.47130 * 183.59101 * 3 2 1 6 6 H 1.07999 * 120.00421 * 240.00114 * 5 3 2 7 7 C 1.37881 * 119.99808 * 60.00033 * 5 3 2 8 8 N 1.31517 * 120.00045 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00351 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46831 * 0.02562 * 9 7 5 11 11 H 1.48490 * 109.47229 * 119.99962 * 9 7 5 12 12 H 1.48498 * 109.47101 * 240.00231 * 9 7 5 13 13 N 1.46902 * 109.47418 * 63.59450 * 3 2 1 14 14 C 1.46893 * 111.00357 * 204.72797 * 13 3 2 15 15 H 1.09002 * 109.47293 * 336.80709 * 14 13 3 16 16 C 1.50698 * 109.47356 * 216.80157 * 14 13 3 17 17 C 1.38228 * 120.00182 * 319.72997 * 16 14 13 18 18 C 1.38240 * 119.99948 * 179.76310 * 17 16 14 19 19 C 1.38233 * 120.00081 * 0.50770 * 18 17 16 20 20 C 1.38234 * 119.99796 * 359.74455 * 19 18 17 21 21 C 1.38238 * 120.00144 * 359.97438 * 20 19 18 22 22 C 1.53007 * 109.46778 * 96.80400 * 14 13 3 23 23 O 1.42897 * 112.84857 * 59.72554 * 22 14 13 24 24 C 1.53779 * 113.61367 * 288.52743 * 22 14 13 25 25 C 1.53962 * 87.01838 * 220.05091 * 24 22 14 26 26 C 1.53779 * 113.61161 * 190.91990 * 22 14 13 27 27 H 1.09001 * 109.46754 * 174.10496 * 1 2 3 28 28 H 1.08995 * 109.47711 * 294.10322 * 1 2 3 29 29 H 1.09003 * 109.47054 * 54.11329 * 1 2 3 30 30 H 1.09003 * 109.47013 * 239.99839 * 2 1 3 31 31 H 1.09003 * 109.46782 * 120.00165 * 2 1 3 32 32 H 0.96995 * 119.99902 * 179.97438 * 8 7 5 33 33 H 1.00906 * 110.99980 * 328.68775 * 13 3 2 34 34 H 1.08002 * 120.00369 * 359.97438 * 17 16 14 35 35 H 1.07999 * 119.99686 * 180.23362 * 18 17 16 36 36 H 1.07999 * 120.00311 * 179.72668 * 19 18 17 37 37 H 1.08001 * 119.99854 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00242 * 179.97438 * 21 20 19 39 39 H 0.96703 * 113.99754 * 179.97438 * 23 22 14 40 40 H 1.08997 * 113.61888 * 334.56730 * 24 22 14 41 41 H 1.08998 * 113.61264 * 105.47486 * 24 22 14 42 42 H 1.09008 * 113.53629 * 270.81302 * 25 24 22 43 43 H 1.08997 * 113.66794 * 139.93418 * 25 24 22 44 44 H 1.09003 * 113.61563 * 254.53112 * 26 22 14 45 45 H 1.08999 * 113.61864 * 25.43373 * 26 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6249 1.9746 -0.8560 5 6 3.5443 1.4435 -0.0890 6 1 4.1315 1.8944 0.6973 7 6 4.1710 0.8686 -1.1743 8 7 3.4560 0.3199 -2.1320 9 14 6.0358 0.8692 -1.2844 10 1 6.6021 1.5431 -0.0883 11 1 6.5286 -0.5304 -1.3431 12 1 6.4591 1.5948 -2.5089 13 7 1.6224 2.1095 1.2405 14 6 1.5539 3.5654 1.0580 15 1 2.1949 3.8580 0.2264 16 6 2.0189 4.2519 2.3164 17 6 1.6514 3.7531 3.5521 18 6 2.0821 4.3800 4.7064 19 6 2.8717 5.5117 4.6250 20 6 3.2348 6.0136 3.3892 21 6 2.8090 5.3833 2.2349 22 6 0.1104 3.9743 0.7577 23 8 -0.7963 3.6177 1.8031 24 6 -0.3693 3.5575 -0.6426 25 6 -1.0755 4.9234 -0.7194 26 6 -0.0322 5.4321 0.2894 27 1 -0.3633 -1.0223 -0.1056 28 1 -0.3634 0.4196 0.9380 29 1 -0.3633 0.6024 -0.8326 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8969 -0.0842 -2.8956 33 1 0.7408 1.7442 1.5684 34 1 1.0306 2.8716 3.6158 35 1 1.7981 3.9880 5.6719 36 1 3.2045 6.0041 5.5267 37 1 3.8513 6.8980 3.3255 38 1 3.0924 5.7756 1.2694 39 1 -1.7140 3.8690 1.6305 40 1 0.4389 3.4426 -1.3648 41 1 -1.0551 2.7103 -0.6350 42 1 -2.0923 4.9105 -0.3268 43 1 -1.0045 5.3983 -1.6979 44 1 -0.4461 6.0961 1.0483 45 1 0.8684 5.8308 -0.1776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:41 Heat of formation + Delta-G solvation = -5.883310 kcal Electronic energy + Delta-G solvation = -24503.427320 eV Core-core repulsion = 21293.160813 eV Total energy + Delta-G solvation = -3210.266507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15284 -38.31526 -35.98313 -34.08658 -32.94304 -31.60133 -30.41962 -29.64829 -27.00520 -25.71337 -25.27350 -23.11770 -22.50602 -21.99394 -20.24221 -19.74563 -19.04194 -16.67507 -16.47629 -16.10571 -15.56660 -14.87427 -14.80697 -14.49848 -14.32612 -13.68972 -13.42527 -13.18748 -12.96156 -12.82672 -12.73027 -12.43145 -12.13826 -11.90317 -11.74269 -11.43940 -11.19797 -10.94704 -10.82854 -10.76738 -10.66030 -10.57866 -10.44025 -10.15934 -9.92962 -9.77893 -9.58460 -9.32037 -9.01829 -8.41728 -8.33132 -8.12627 -7.12170 -5.94759 -3.98026 1.86273 1.93252 3.32257 3.40750 3.47191 4.21134 4.42722 4.48020 4.68819 4.71237 4.97536 5.01630 5.22658 5.34519 5.34811 5.41505 5.57882 5.67748 5.77361 5.89481 5.92376 5.99214 6.06581 6.08741 6.14088 6.16996 6.20979 6.26472 6.29935 6.46070 6.47152 6.53771 6.62263 6.88901 6.92156 6.98208 7.13014 7.22080 7.24488 7.50607 7.56357 7.81117 7.83929 7.97551 8.36016 8.43592 8.83502 9.11840 9.67334 11.10286 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.006897 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.962200 B = 4058.764580 C = 5167.600268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.008 0.992 5 C -0.491 4.491 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.674 5.674 14 C 0.157 3.843 15 H 0.096 0.904 16 C -0.044 4.044 17 C -0.074 4.074 18 C -0.132 4.132 19 C -0.135 4.135 20 C -0.130 4.130 21 C -0.120 4.120 22 C 0.097 3.903 23 O -0.533 6.533 24 C -0.165 4.165 25 C -0.149 4.149 26 C -0.164 4.164 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.040 0.960 32 H 0.258 0.742 33 H 0.329 0.671 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.369 0.631 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.337 9.553 6.229 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.025 0.975 5 C -0.530 4.530 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.305 5.305 14 C 0.045 3.955 15 H 0.114 0.886 16 C -0.045 4.045 17 C -0.092 4.092 18 C -0.151 4.151 19 C -0.153 4.153 20 C -0.148 4.148 21 C -0.138 4.138 22 C 0.054 3.946 23 O -0.338 6.338 24 C -0.203 4.203 25 C -0.186 4.186 26 C -0.202 4.202 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.215 0.785 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.112 9.199 6.586 13.363 hybrid contribution -0.262 0.248 -1.011 1.074 sum -7.373 9.446 5.575 13.216 Atomic orbital electron populations 1.21902 0.99651 0.99517 0.99650 1.21754 0.91159 1.00469 1.02979 1.19269 0.95013 0.89882 0.84777 0.97464 1.21313 0.91287 1.35587 1.04796 0.92029 1.24935 0.97976 0.95722 0.95828 1.69880 1.34638 1.39255 1.09950 0.86557 0.86193 0.77606 0.77788 1.19752 1.21196 1.21322 1.60638 1.34779 1.00380 1.34729 1.20381 0.89804 0.90665 0.94619 0.88569 1.19883 0.95534 0.93788 0.95293 1.20919 0.98176 0.98720 0.91400 1.21088 0.99312 0.96447 0.98207 1.20959 0.99887 0.97370 0.97107 1.20946 1.00949 1.00170 0.92727 1.21002 0.98550 0.96175 0.98078 1.22984 0.91652 0.93533 0.86420 1.86497 1.20275 1.83327 1.43653 1.23791 1.01177 0.96846 0.98470 1.22928 0.97924 0.97786 0.99995 1.23625 0.99912 0.97745 0.98948 0.94629 0.94320 0.93972 0.88421 0.94140 0.93241 0.85135 0.85932 0.87008 0.87179 0.86997 0.86788 0.78478 0.88375 0.90967 0.90728 0.91267 0.91282 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.60 37.16 0.36 -2.50 16 2 C -0.13 -2.90 5.37 -26.73 -0.14 -3.05 16 3 C 0.22 5.17 1.70 -68.87 -0.12 5.06 16 4 H 0.01 0.20 5.72 -51.93 -0.30 -0.10 16 5 C -0.49 -13.31 8.57 -34.44 -0.29 -13.60 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.52 5.30 -17.82 -0.09 1.42 16 8 N -0.90 -25.06 11.30 55.43 0.63 -24.44 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.67 -13.95 5.36 -102.18 -0.55 -14.50 16 14 C 0.16 2.87 1.70 -68.87 -0.12 2.75 16 15 H 0.10 1.97 7.37 -51.93 -0.38 1.59 16 16 C -0.04 -0.78 4.69 -104.63 -0.49 -1.27 16 17 C -0.07 -1.26 8.60 -39.58 -0.34 -1.60 16 18 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 19 C -0.14 -1.92 10.05 -39.58 -0.40 -2.32 16 20 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 21 C -0.12 -1.95 9.67 -39.58 -0.38 -2.33 16 22 C 0.10 1.45 0.88 -89.81 -0.08 1.37 16 23 O -0.53 -7.53 11.86 -35.23 -0.42 -7.94 16 24 C -0.17 -2.46 6.58 -25.82 -0.17 -2.63 16 25 C -0.15 -1.76 7.76 -25.82 -0.20 -1.96 16 26 C -0.16 -2.13 7.22 -25.92 -0.19 -2.32 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.68 6.58 -51.93 -0.34 0.34 16 29 H 0.04 0.79 7.49 -51.93 -0.39 0.40 16 30 H 0.10 2.55 5.98 -51.93 -0.31 2.24 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.33 6.51 5.39 -39.29 -0.21 6.30 16 34 H 0.12 2.15 7.55 -52.49 -0.40 1.75 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.11 1.72 8.04 -52.49 -0.42 1.30 16 39 H 0.37 3.81 8.33 45.56 0.38 4.19 16 40 H 0.10 1.70 6.84 -51.93 -0.36 1.35 16 41 H 0.07 1.08 7.49 -51.93 -0.39 0.69 16 42 H 0.07 0.74 7.80 -51.92 -0.40 0.34 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.18 8.10 -51.93 -0.42 0.75 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -28.59 352.68 -9.94 -38.53 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -6.45 Total: 14.19 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -3.45 Total: -27.68 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.08 Total: -38.94 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.42 Total: -7.94 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.59 -9.94 -38.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.647 kcal (2) G-P(sol) polarization free energy of solvation -28.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds