Wall clock time and date at job start Tue Mar 31 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.46795 * 2 1 4 4 H 1.08997 * 109.47492 * 303.59608 * 3 2 1 5 5 C 1.50698 * 109.47130 * 183.59101 * 3 2 1 6 6 H 1.07999 * 120.00421 * 240.00114 * 5 3 2 7 7 C 1.37881 * 119.99808 * 60.00033 * 5 3 2 8 8 N 1.31517 * 120.00045 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00351 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46831 * 0.02562 * 9 7 5 11 11 H 1.48490 * 109.47229 * 119.99962 * 9 7 5 12 12 H 1.48498 * 109.47101 * 240.00231 * 9 7 5 13 13 N 1.46902 * 109.47418 * 63.59450 * 3 2 1 14 14 C 1.46893 * 111.00357 * 204.72797 * 13 3 2 15 15 H 1.09002 * 109.47293 * 336.80709 * 14 13 3 16 16 C 1.50698 * 109.47356 * 216.80157 * 14 13 3 17 17 C 1.38228 * 120.00182 * 319.72997 * 16 14 13 18 18 C 1.38240 * 119.99948 * 179.76310 * 17 16 14 19 19 C 1.38233 * 120.00081 * 0.50770 * 18 17 16 20 20 C 1.38234 * 119.99796 * 359.74455 * 19 18 17 21 21 C 1.38238 * 120.00144 * 359.97438 * 20 19 18 22 22 C 1.53007 * 109.46778 * 96.80400 * 14 13 3 23 23 O 1.42897 * 112.84857 * 59.72554 * 22 14 13 24 24 C 1.53779 * 113.61367 * 288.52743 * 22 14 13 25 25 C 1.53962 * 87.01838 * 220.05091 * 24 22 14 26 26 C 1.53779 * 113.61161 * 190.91990 * 22 14 13 27 27 H 1.09001 * 109.46754 * 174.10496 * 1 2 3 28 28 H 1.08995 * 109.47711 * 294.10322 * 1 2 3 29 29 H 1.09003 * 109.47054 * 54.11329 * 1 2 3 30 30 H 1.09003 * 109.47013 * 239.99839 * 2 1 3 31 31 H 1.09003 * 109.46782 * 120.00165 * 2 1 3 32 32 H 0.96995 * 119.99902 * 179.97438 * 8 7 5 33 33 H 1.00906 * 110.99980 * 328.68775 * 13 3 2 34 34 H 1.08002 * 120.00369 * 359.97438 * 17 16 14 35 35 H 1.07999 * 119.99686 * 180.23362 * 18 17 16 36 36 H 1.07999 * 120.00311 * 179.72668 * 19 18 17 37 37 H 1.08001 * 119.99854 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00242 * 179.97438 * 21 20 19 39 39 H 0.96703 * 113.99754 * 179.97438 * 23 22 14 40 40 H 1.08997 * 113.61888 * 334.56730 * 24 22 14 41 41 H 1.08998 * 113.61264 * 105.47486 * 24 22 14 42 42 H 1.09008 * 113.53629 * 270.81302 * 25 24 22 43 43 H 1.08997 * 113.66794 * 139.93418 * 25 24 22 44 44 H 1.09003 * 113.61563 * 254.53112 * 26 22 14 45 45 H 1.08999 * 113.61864 * 25.43373 * 26 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6249 1.9746 -0.8560 5 6 3.5443 1.4435 -0.0890 6 1 4.1315 1.8944 0.6973 7 6 4.1710 0.8686 -1.1743 8 7 3.4560 0.3199 -2.1320 9 14 6.0358 0.8692 -1.2844 10 1 6.6021 1.5431 -0.0883 11 1 6.5286 -0.5304 -1.3431 12 1 6.4591 1.5948 -2.5089 13 7 1.6224 2.1095 1.2405 14 6 1.5539 3.5654 1.0580 15 1 2.1949 3.8580 0.2264 16 6 2.0189 4.2519 2.3164 17 6 1.6514 3.7531 3.5521 18 6 2.0821 4.3800 4.7064 19 6 2.8717 5.5117 4.6250 20 6 3.2348 6.0136 3.3892 21 6 2.8090 5.3833 2.2349 22 6 0.1104 3.9743 0.7577 23 8 -0.7963 3.6177 1.8031 24 6 -0.3693 3.5575 -0.6426 25 6 -1.0755 4.9234 -0.7194 26 6 -0.0322 5.4321 0.2894 27 1 -0.3633 -1.0223 -0.1056 28 1 -0.3634 0.4196 0.9380 29 1 -0.3633 0.6024 -0.8326 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8969 -0.0842 -2.8956 33 1 0.7408 1.7442 1.5684 34 1 1.0306 2.8716 3.6158 35 1 1.7981 3.9880 5.6719 36 1 3.2045 6.0041 5.5267 37 1 3.8513 6.8980 3.3255 38 1 3.0924 5.7756 1.2694 39 1 -1.7140 3.8690 1.6305 40 1 0.4389 3.4426 -1.3648 41 1 -1.0551 2.7103 -0.6350 42 1 -2.0923 4.9105 -0.3268 43 1 -1.0045 5.3983 -1.6979 44 1 -0.4461 6.0961 1.0483 45 1 0.8684 5.8308 -0.1776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:40 Heat of formation + Delta-G solvation = -22.877077 kcal Electronic energy + Delta-G solvation = -24504.164225 eV Core-core repulsion = 21293.160813 eV Total energy + Delta-G solvation = -3211.003412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.38642 -39.49342 -37.70719 -35.19435 -34.64519 -33.42380 -31.63599 -31.10067 -28.72651 -27.14932 -26.55701 -24.72697 -23.90712 -23.25758 -21.59046 -21.31602 -20.41481 -18.34189 -17.84769 -17.46227 -16.93611 -16.66322 -16.15006 -15.88171 -15.70536 -15.17815 -14.75709 -14.64032 -14.48884 -14.12273 -13.94112 -13.84724 -13.46772 -13.28231 -13.18061 -13.11222 -12.90964 -12.72095 -12.49338 -12.14673 -11.98354 -11.89673 -11.79756 -11.70539 -11.49906 -11.41624 -11.35757 -10.89782 -10.56948 -10.40135 -9.63073 -9.38097 -8.81527 -8.04833 -6.15521 0.64608 0.71746 1.36649 1.39859 1.51280 2.43637 3.00718 3.19277 3.26806 3.56025 3.56252 3.75594 3.90208 3.93710 4.19803 4.28530 4.40221 4.45727 4.51082 4.55742 4.59858 4.72120 4.75271 4.76620 4.82632 4.88218 4.93721 5.02095 5.03549 5.11856 5.18557 5.25645 5.30654 5.36484 5.40563 5.45161 5.63031 5.73046 5.76684 5.81512 5.91348 6.00981 6.30983 6.41730 6.58769 6.89710 7.00611 7.09341 7.53614 8.97388 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.006897 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.962200 B = 4058.764580 C = 5167.600268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 C 0.229 3.771 4 H -0.012 1.012 5 C -0.507 4.507 6 H 0.041 0.959 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.677 5.677 14 C 0.158 3.842 15 H 0.062 0.938 16 C -0.064 4.064 17 C -0.092 4.092 18 C -0.135 4.135 19 C -0.133 4.133 20 C -0.129 4.129 21 C -0.137 4.137 22 C 0.103 3.897 23 O -0.540 6.540 24 C -0.171 4.171 25 C -0.129 4.129 26 C -0.157 4.157 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.259 0.741 33 H 0.334 0.666 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.115 0.885 39 H 0.388 0.612 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.157 10.993 7.683 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.121 3.879 4 H 0.005 0.995 5 C -0.546 4.546 6 H 0.059 0.941 7 C -0.184 4.184 8 N -0.558 5.558 9 Si 0.773 3.227 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.308 5.308 14 C 0.047 3.953 15 H 0.080 0.920 16 C -0.065 4.065 17 C -0.110 4.110 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.156 4.156 22 C 0.060 3.940 23 O -0.347 6.347 24 C -0.209 4.209 25 C -0.166 4.166 26 C -0.196 4.196 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.154 0.846 34 H 0.130 0.870 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.133 0.867 39 H 0.237 0.763 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.122 0.878 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.954 10.652 8.043 15.538 hybrid contribution 0.017 -0.175 -1.404 1.415 sum -7.938 10.477 6.639 14.726 Atomic orbital electron populations 1.21731 0.96266 1.00823 1.00437 1.21591 0.94190 0.99430 1.00768 1.18979 0.93228 0.90329 0.85400 0.99465 1.21515 0.93139 1.35530 1.04384 0.94063 1.25563 1.01715 0.95539 0.95618 1.69988 1.35929 1.39624 1.10221 0.85690 0.81746 0.77650 0.77652 1.20047 1.20680 1.20589 1.60517 1.35197 1.01993 1.33099 1.20239 0.91832 0.89068 0.94177 0.91969 1.19875 0.96856 0.94711 0.95014 1.20921 0.99087 0.98971 0.92025 1.21391 0.98881 0.96539 0.98456 1.21361 0.98731 0.96785 0.98173 1.21295 1.00488 1.00676 0.92255 1.21163 0.98911 0.96361 0.99122 1.22706 0.90004 0.94985 0.86333 1.86452 1.21514 1.83563 1.43140 1.23715 1.00585 0.98888 0.97738 1.22897 0.98709 0.94770 1.00204 1.23548 1.00143 0.96445 0.99420 0.92843 0.92791 0.94005 0.91464 0.95331 0.93167 0.84648 0.87025 0.84689 0.83895 0.84306 0.86729 0.76266 0.91830 0.91119 0.87751 0.90553 0.89930 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 9.60 71.98 0.69 -4.43 16 2 C -0.12 -5.80 5.37 30.59 0.16 -5.63 16 3 C 0.23 11.37 1.70 44.17 0.07 11.44 16 4 H -0.01 -0.65 5.72 -2.39 -0.01 -0.66 16 5 C -0.51 -28.67 8.57 25.60 0.22 -28.45 16 6 H 0.04 2.45 7.81 -2.91 -0.02 2.42 16 7 C 0.01 0.77 5.30 84.66 0.45 1.22 16 8 N -0.92 -52.76 11.30 21.45 0.24 -52.52 16 9 Si 0.95 45.18 29.54 68.60 2.03 47.21 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 N -0.68 -29.04 5.36 -477.18 -2.56 -31.59 16 14 C 0.16 6.00 1.70 44.17 0.08 6.07 16 15 H 0.06 2.75 7.37 -2.39 -0.02 2.73 16 16 C -0.06 -2.27 4.69 -19.87 -0.09 -2.36 16 17 C -0.09 -3.10 8.60 22.27 0.19 -2.91 16 18 C -0.13 -3.81 10.05 22.27 0.22 -3.58 16 19 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 20 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 21 C -0.14 -4.44 9.67 22.27 0.22 -4.22 16 22 C 0.10 3.07 0.88 -10.27 -0.01 3.06 16 23 O -0.54 -14.53 11.86 -148.98 -1.77 -16.30 16 24 C -0.17 -5.14 6.58 31.18 0.21 -4.94 16 25 C -0.13 -2.81 7.76 31.18 0.24 -2.57 16 26 C -0.16 -3.93 7.22 31.12 0.22 -3.70 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.87 6.58 -2.39 -0.02 1.85 16 29 H 0.04 1.57 7.49 -2.39 -0.02 1.55 16 30 H 0.07 3.64 5.98 -2.39 -0.01 3.63 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 32 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.33 13.45 5.39 -89.69 -0.48 12.96 16 34 H 0.11 3.93 7.55 -2.91 -0.02 3.90 16 35 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.11 3.56 8.04 -2.91 -0.02 3.53 16 39 H 0.39 7.02 8.33 -74.06 -0.62 6.41 16 40 H 0.06 2.35 6.84 -2.39 -0.02 2.33 16 41 H 0.07 2.10 7.49 -2.39 -0.02 2.08 16 42 H 0.10 1.70 7.80 -2.38 -0.02 1.68 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 Total: -1.00 -63.77 352.68 1.15 -62.62 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.12 Total: 38.05 kcal Atomic # 6 Polarization: -50.79 SS G_CDS: 3.32 Total: -47.47 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -2.31 Total: -84.12 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -1.77 Total: -16.30 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -63.77 1.15 -62.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.742 kcal (2) G-P(sol) polarization free energy of solvation -63.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds