Wall clock time and date at job start Tue Mar 31 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47040 * 2 1 4 4 H 1.08997 * 109.46958 * 54.26556 * 3 2 1 5 5 C 1.50704 * 109.46859 * 174.26359 * 3 2 1 6 6 H 1.08001 * 119.99899 * 120.00610 * 5 3 2 7 7 C 1.37873 * 119.99919 * 299.99771 * 5 3 2 8 8 N 1.31520 * 120.00449 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99999 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46589 * 90.00708 * 9 7 5 11 11 H 1.48494 * 109.47538 * 210.00186 * 9 7 5 12 12 H 1.48497 * 109.47403 * 330.00837 * 9 7 5 13 13 N 1.46894 * 109.47460 * 294.26299 * 3 2 1 14 14 C 1.46908 * 111.00053 * 157.37169 * 13 3 2 15 15 H 1.09001 * 109.46836 * 36.70806 * 14 13 3 16 16 C 1.50702 * 109.46969 * 276.70764 * 14 13 3 17 17 C 1.38233 * 120.00018 * 319.73080 * 16 14 13 18 18 C 1.38240 * 119.99595 * 179.76458 * 17 16 14 19 19 C 1.38234 * 119.99952 * 0.50612 * 18 17 16 20 20 C 1.38228 * 120.00153 * 359.74605 * 19 18 17 21 21 C 1.38232 * 120.00038 * 359.97438 * 20 19 18 22 22 C 1.53001 * 109.46830 * 156.71178 * 14 13 3 23 23 O 1.42896 * 112.85186 * 63.29187 * 22 14 13 24 24 C 1.53785 * 113.60869 * 194.48421 * 22 14 13 25 25 C 1.54051 * 86.98347 * 140.01810 * 24 22 14 26 26 C 1.53780 * 113.61053 * 292.09023 * 22 14 13 27 27 H 1.08996 * 109.47582 * 186.45231 * 1 2 3 28 28 H 1.09001 * 109.47466 * 306.46105 * 1 2 3 29 29 H 1.09010 * 109.47135 * 66.45153 * 1 2 3 30 30 H 1.09004 * 109.46811 * 240.00214 * 2 1 3 31 31 H 1.08999 * 109.46833 * 120.00071 * 2 1 3 32 32 H 0.96998 * 120.00174 * 179.97438 * 8 7 5 33 33 H 1.00899 * 110.99798 * 33.41888 * 13 3 2 34 34 H 1.07997 * 120.00338 * 359.97438 * 17 16 14 35 35 H 1.08005 * 119.99843 * 180.22750 * 18 17 16 36 36 H 1.08001 * 119.99568 * 179.72546 * 19 18 17 37 37 H 1.08005 * 120.00223 * 179.97438 * 20 19 18 38 38 H 1.08007 * 120.00132 * 179.97438 * 21 20 19 39 39 H 0.96702 * 114.00087 * 179.97438 * 23 22 14 40 40 H 1.08995 * 113.61392 * 254.60973 * 24 22 14 41 41 H 1.08999 * 113.61561 * 25.52222 * 24 22 14 42 42 H 1.09002 * 113.62179 * 220.02446 * 25 24 22 43 43 H 1.09004 * 113.61292 * 89.11281 * 25 24 22 44 44 H 1.09000 * 113.61913 * 334.48270 * 26 22 14 45 45 H 1.09000 * 113.61459 * 105.39467 * 26 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5952 1.9851 0.8342 5 6 3.5403 1.4448 0.1420 6 1 4.1550 1.8862 -0.6286 7 6 4.1282 0.8837 1.2558 8 7 3.3797 0.3459 2.1941 9 14 5.9879 0.8859 1.4315 10 1 6.4171 2.1218 2.1341 11 1 6.4126 -0.3017 2.2152 12 1 6.6125 0.8397 0.0850 13 7 1.6667 2.0939 -1.2626 14 6 1.6406 3.5552 -1.1135 15 1 2.4450 3.8668 -0.4472 16 6 0.3155 3.9773 -0.5330 17 6 -0.8501 3.3654 -0.9545 18 6 -2.0651 3.7493 -0.4185 19 6 -2.1155 4.7524 0.5313 20 6 -0.9504 5.3679 0.9490 21 6 0.2651 4.9800 0.4172 22 6 1.8297 4.2109 -2.4829 23 8 0.7703 3.9099 -3.3933 24 6 2.1696 5.7088 -2.4068 25 6 3.1600 5.4594 -3.5600 26 6 3.2320 4.0007 -3.0781 27 1 -0.3634 -1.0211 0.1155 28 1 -0.3634 0.6107 0.8265 29 1 -0.3634 0.4106 -0.9422 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 3.7934 -0.0491 2.9774 33 1 0.7802 1.7489 -1.5991 34 1 -0.8113 2.5850 -1.7001 35 1 -2.9755 3.2687 -0.7451 36 1 -3.0652 5.0554 0.9468 37 1 -0.9898 6.1519 1.6908 38 1 1.1755 5.4613 0.7432 39 1 0.8729 4.3166 -4.2646 40 1 1.3379 6.3595 -2.6767 41 1 2.6510 6.0005 -1.4734 42 1 4.0999 6.0012 -3.4535 43 1 2.7156 5.5710 -4.5491 44 1 4.0032 3.8264 -2.3278 45 1 3.2573 3.2735 -3.8896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:43 Heat of formation + Delta-G solvation = -5.510950 kcal Electronic energy + Delta-G solvation = -24521.150441 eV Core-core repulsion = 21310.900081 eV Total energy + Delta-G solvation = -3210.250360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.02650 -38.41082 -36.04711 -33.95261 -32.96589 -31.50706 -30.50710 -29.57888 -27.01657 -25.72411 -25.27891 -22.91537 -22.66262 -22.01371 -20.24395 -19.54442 -19.10050 -16.80360 -16.41053 -16.03460 -15.51312 -14.93310 -14.81107 -14.43194 -14.28316 -13.65392 -13.56071 -13.16817 -13.01337 -12.71793 -12.69546 -12.34177 -12.13509 -11.87732 -11.78883 -11.44314 -11.19238 -10.91661 -10.83510 -10.70277 -10.64345 -10.62363 -10.46354 -10.13161 -9.91482 -9.60760 -9.51545 -9.29151 -8.99546 -8.50876 -8.33199 -8.21026 -7.18301 -5.93675 -3.98083 1.77796 1.81737 3.32022 3.39406 3.43149 4.19046 4.45568 4.53909 4.75209 4.79355 5.03259 5.10712 5.25724 5.29206 5.33863 5.40140 5.48997 5.63793 5.81299 5.90104 5.98397 6.01820 6.06772 6.08658 6.18865 6.24279 6.25427 6.31940 6.41283 6.43290 6.50147 6.52770 6.70514 6.84521 6.87898 6.93065 7.08740 7.17108 7.25387 7.41276 7.58375 7.83118 7.94713 7.98728 8.35630 8.44120 8.81960 9.09957 9.66705 11.11449 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.006931 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.335141 B = 4038.668044 C = 5071.454375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.670 5.670 14 C 0.155 3.845 15 H 0.101 0.899 16 C -0.087 4.087 17 C -0.093 4.093 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.126 4.126 21 C -0.114 4.114 22 C 0.136 3.864 23 O -0.535 6.535 24 C -0.168 4.168 25 C -0.153 4.153 26 C -0.147 4.147 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.098 0.902 32 H 0.259 0.741 33 H 0.324 0.676 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.366 0.634 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 9.614 -7.578 13.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.300 5.300 14 C 0.044 3.956 15 H 0.119 0.881 16 C -0.089 4.089 17 C -0.112 4.112 18 C -0.144 4.144 19 C -0.151 4.151 20 C -0.144 4.144 21 C -0.132 4.132 22 C 0.094 3.906 23 O -0.339 6.339 24 C -0.206 4.206 25 C -0.191 4.191 26 C -0.184 4.184 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.212 0.788 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.113 0.887 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.248 9.114 -7.138 13.155 hybrid contribution 0.376 0.437 0.323 0.660 sum -5.872 9.551 -6.815 13.120 Atomic orbital electron populations 1.21880 0.99599 0.99521 0.99564 1.21733 0.91242 1.00370 1.02885 1.19162 0.95206 0.90006 0.84443 0.97959 1.21211 0.91317 1.36612 1.04038 0.92102 1.24948 0.97819 0.95733 0.95958 1.69882 1.34542 1.39429 1.09513 0.86612 0.86122 0.77327 0.78004 1.20975 1.21414 1.19937 1.60814 1.35130 1.00987 1.33105 1.20476 0.92843 0.90677 0.91633 0.88078 1.20819 0.96927 0.95362 0.95784 1.20914 0.91860 0.99458 0.98940 1.21046 0.97620 0.97906 0.97782 1.20990 0.97821 0.97645 0.98639 1.21022 0.92828 1.00324 1.00222 1.21054 0.97562 0.97494 0.97130 1.22208 0.86531 0.92064 0.89794 1.86524 1.46428 1.75513 1.25401 1.23738 0.99315 0.98074 0.99516 1.22992 0.99797 0.98468 0.97807 1.23472 0.98615 0.95023 1.01318 0.94580 0.93891 0.94685 0.94172 0.88357 0.93151 0.85591 0.86126 0.86813 0.86952 0.86812 0.86579 0.78814 0.91488 0.89402 0.91450 0.90837 0.88696 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.62 37.16 0.36 -2.63 16 2 C -0.12 -2.95 5.38 -26.73 -0.14 -3.09 16 3 C 0.22 5.36 1.86 -68.87 -0.13 5.23 16 4 H 0.00 0.08 7.59 -51.93 -0.39 -0.32 16 5 C -0.49 -13.22 8.36 -34.44 -0.29 -13.51 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.43 16 8 N -0.89 -25.31 11.29 55.43 0.63 -24.69 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.67 -13.95 5.92 -102.17 -0.60 -14.55 16 14 C 0.16 2.86 1.61 -68.86 -0.11 2.75 16 15 H 0.10 2.08 7.39 -51.93 -0.38 1.69 16 16 C -0.09 -1.53 4.30 -104.62 -0.45 -1.98 16 17 C -0.09 -1.58 8.32 -39.58 -0.33 -1.91 16 18 C -0.13 -1.90 10.05 -39.58 -0.40 -2.29 16 19 C -0.13 -1.90 10.05 -39.59 -0.40 -2.30 16 20 C -0.13 -1.87 10.05 -39.59 -0.40 -2.27 16 21 C -0.11 -1.88 9.67 -39.58 -0.38 -2.26 16 22 C 0.14 2.08 1.04 -89.81 -0.09 1.99 16 23 O -0.53 -7.83 12.37 -35.23 -0.44 -8.26 16 24 C -0.17 -2.20 7.32 -25.77 -0.19 -2.39 16 25 C -0.15 -1.81 7.76 -25.77 -0.20 -2.01 16 26 C -0.15 -2.19 7.36 -25.91 -0.19 -2.38 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.64 6.49 -51.92 -0.34 0.30 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.32 6.53 4.31 -39.29 -0.17 6.36 16 34 H 0.12 2.07 6.22 -52.49 -0.33 1.74 16 35 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 36 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 38 H 0.12 1.80 8.04 -52.48 -0.42 1.37 16 39 H 0.37 3.94 8.32 45.56 0.38 4.32 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 44 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 355.87 15.07 5.36 5.36 Total: -1.00 -28.82 355.87 -10.06 -38.89 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -6.56 Total: 14.65 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -3.43 Total: -27.62 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.02 Total: -39.24 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.44 Total: -8.26 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.82 -10.06 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.376 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds