Wall clock time and date at job start Tue Mar 31 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99997 * 2 1 4 4 O 1.42899 * 109.46830 * 134.99942 * 3 2 1 5 5 C 1.35905 * 116.99623 * 180.02562 * 4 3 2 6 6 C 1.38747 * 120.05662 * 359.95268 * 5 4 3 7 7 C 1.38122 * 119.94201 * 179.97438 * 6 5 4 8 8 C 1.38279 * 120.05795 * 0.03170 * 7 6 5 9 9 C 1.38239 * 120.11361 * 0.02562 * 8 7 6 10 10 C 1.38169 * 120.05390 * 359.96215 * 9 8 7 11 11 C 1.50704 * 120.02666 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46734 * 145.00292 * 11 10 9 13 13 C 1.52999 * 109.47114 * 265.00208 * 11 10 9 14 14 N 1.46897 * 109.47437 * 24.99962 * 11 10 9 15 15 C 1.46898 * 111.00036 * 156.81491 * 14 11 10 16 16 H 1.08991 * 109.47195 * 34.21428 * 15 14 11 17 17 C 1.50704 * 109.47146 * 274.21596 * 15 14 11 18 18 H 1.08002 * 119.99984 * 359.97438 * 17 15 14 19 19 C 1.37872 * 119.99810 * 180.02562 * 17 15 14 20 20 N 1.31512 * 120.00147 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 119.99878 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47402 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.47076 * 209.99691 * 21 19 17 24 24 H 1.48496 * 109.47478 * 329.99793 * 21 19 17 25 25 C 1.53001 * 109.47078 * 154.21527 * 15 14 11 26 26 C 1.52994 * 109.46995 * 296.14026 * 25 15 14 27 27 H 1.08000 * 120.00407 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00133 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99721 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47035 * 15.00070 * 3 2 1 31 31 H 1.08995 * 109.47028 * 254.99959 * 3 2 1 32 32 H 1.07997 * 120.03063 * 0.05025 * 6 5 4 33 33 H 1.08002 * 119.96884 * 180.29898 * 7 6 5 34 34 H 1.08004 * 119.94583 * 180.02562 * 8 7 6 35 35 H 1.08008 * 119.97647 * 179.97438 * 9 8 7 36 36 H 1.09006 * 109.47249 * 185.12968 * 13 11 10 37 37 H 1.09010 * 109.46952 * 305.12433 * 13 11 10 38 38 H 1.08997 * 109.47453 * 65.12219 * 13 11 10 39 39 H 1.00906 * 110.99933 * 32.86624 * 14 11 10 40 40 H 0.97000 * 120.00104 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.47005 * 56.14053 * 25 15 14 42 42 H 1.09001 * 109.47187 * 176.13261 * 25 15 14 43 43 H 1.09006 * 109.46880 * 185.21441 * 26 25 15 44 44 H 1.09005 * 109.47330 * 305.20646 * 26 25 15 45 45 H 1.08999 * 109.47877 * 65.21287 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9090 2.3453 1.0790 6 6 3.6591 3.4667 0.3012 7 6 4.4554 4.5877 0.4318 8 6 5.5013 4.5927 1.3364 9 6 5.7531 3.4763 2.1117 10 6 4.9594 2.3525 1.9849 11 6 5.2348 1.1355 2.8300 12 1 4.2927 0.6520 3.0888 13 6 6.1113 0.1573 2.0453 14 7 5.9313 1.5397 4.0585 15 6 5.7388 0.5469 5.1239 16 1 5.6902 -0.4503 4.6868 17 6 4.4537 0.8378 5.8555 18 1 3.8415 1.6767 5.5589 19 6 4.0602 0.0337 6.9040 20 7 4.8059 -0.9874 7.2655 21 14 2.4677 0.3947 7.8113 22 1 1.3501 -0.3336 7.1587 23 1 2.5906 -0.0495 9.2230 24 1 2.1963 1.8542 7.7735 25 6 6.9111 0.6173 6.1046 26 6 8.2032 0.2280 5.3836 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3855 2.1161 0.2660 31 1 2.4755 1.4867 -0.9926 32 1 2.8420 3.4636 -0.4049 33 1 4.2583 5.4626 -0.1700 34 1 6.1226 5.4704 1.4373 35 1 6.5709 3.4824 2.8172 36 1 6.2352 -0.7608 2.6196 37 1 5.6356 -0.0721 1.0916 38 1 7.0873 0.6079 1.8652 39 1 5.6322 2.4553 4.3592 40 1 4.5293 -1.5529 8.0034 41 1 7.0019 1.6328 6.4900 42 1 6.7349 -0.0707 6.9315 43 1 9.0222 0.1882 6.1018 44 1 8.0795 -0.7503 4.9190 45 1 8.4285 0.9687 4.6163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:04 Heat of formation + Delta-G solvation = -0.468384 kcal Electronic energy + Delta-G solvation = -23465.000383 eV Core-core repulsion = 20254.968685 eV Total energy + Delta-G solvation = -3210.031698 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15237 -37.68244 -36.29617 -34.14704 -33.50233 -31.49723 -29.95198 -29.68210 -28.32089 -26.61344 -25.85602 -23.35398 -22.57137 -21.81363 -20.36612 -19.60321 -19.22983 -17.90852 -16.61566 -16.31521 -15.77654 -15.52914 -14.84216 -14.53051 -14.24962 -14.03155 -13.62507 -13.46247 -13.23466 -12.73553 -12.62745 -12.51513 -12.03372 -11.86150 -11.53289 -11.35843 -11.28163 -11.20053 -11.09638 -11.05651 -10.95610 -10.62582 -10.60044 -10.15808 -10.03956 -9.63722 -9.52253 -9.43103 -8.99327 -8.57061 -8.31559 -7.88956 -7.20398 -5.94340 -4.06226 1.57299 1.66886 1.94826 3.30136 3.36948 3.40499 3.47272 4.00450 4.44255 4.69968 4.89508 4.91714 5.05337 5.11777 5.28453 5.30007 5.31243 5.40978 5.55510 5.66252 5.74013 5.91409 6.06758 6.20103 6.32870 6.37622 6.39255 6.45831 6.46148 6.55285 6.56836 6.64480 6.71535 6.78013 6.86547 6.98963 7.06802 7.20098 7.23274 7.52229 7.61100 7.67169 7.83863 8.15385 8.22985 8.40431 8.73095 9.06625 9.61001 11.05898 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011371 B = 0.005643 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.725241 B = 4960.848697 C = 6224.337697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.151 4.151 3 C 0.087 3.913 4 O -0.301 6.301 5 C 0.129 3.871 6 C -0.215 4.215 7 C -0.094 4.094 8 C -0.160 4.160 9 C -0.069 4.069 10 C -0.099 4.099 11 C 0.133 3.867 12 H 0.060 0.940 13 C -0.124 4.124 14 N -0.683 5.683 15 C 0.216 3.784 16 H 0.034 0.966 17 C -0.541 4.541 18 H 0.052 0.948 19 C 0.068 3.932 20 N -0.886 5.886 21 Si 0.886 3.114 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.105 4.105 26 C -0.135 4.135 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.328 0.672 40 H 0.260 0.740 41 H 0.029 0.971 42 H 0.089 0.911 43 H 0.023 0.977 44 H 0.036 0.964 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 6.249 -15.039 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.169 4.169 3 C 0.012 3.988 4 O -0.215 6.215 5 C 0.084 3.916 6 C -0.234 4.234 7 C -0.112 4.112 8 C -0.179 4.179 9 C -0.087 4.087 10 C -0.100 4.100 11 C 0.023 3.977 12 H 0.078 0.922 13 C -0.182 4.182 14 N -0.314 5.314 15 C 0.108 3.892 16 H 0.052 0.948 17 C -0.580 4.580 18 H 0.070 0.930 19 C -0.134 4.134 20 N -0.524 5.524 21 Si 0.714 3.286 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.144 4.144 26 C -0.192 4.192 27 H 0.116 0.884 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.107 0.893 43 H 0.042 0.958 44 H 0.055 0.945 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.986 5.631 -14.997 16.142 hybrid contribution -2.100 0.499 0.642 2.252 sum -4.085 6.130 -14.355 16.135 Atomic orbital electron populations 1.23840 0.95447 1.02385 0.99620 1.22697 0.95664 0.97979 1.00533 1.21768 0.88204 0.96661 0.92169 1.86184 1.41701 1.35500 1.58099 1.18859 0.91263 0.86040 0.95463 1.21101 1.03722 0.94630 1.03900 1.20812 0.95128 0.97095 0.98175 1.21045 0.99361 0.98897 0.98554 1.21043 0.98460 0.91312 0.97895 1.19658 0.94517 0.97727 0.98059 1.20108 0.96675 0.91067 0.89855 0.92195 1.21679 0.99234 0.98905 0.98396 1.61092 1.58891 1.06449 1.04961 1.19168 0.92213 0.90821 0.87032 0.94811 1.21877 1.06801 1.13111 1.16255 0.92986 1.24903 0.96660 0.94963 0.96909 1.69876 1.37316 1.16724 1.28503 0.86698 0.84249 0.78554 0.79112 1.20815 1.21192 1.20049 1.21486 0.92871 0.99878 1.00159 1.21682 0.98009 1.00165 0.99348 0.88420 0.87517 0.86135 0.91818 0.91379 0.86138 0.86488 0.86298 0.84125 0.92535 0.93749 0.92838 0.85510 0.92977 0.95169 0.89265 0.95830 0.94496 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 14.31 29.01 0.42 -1.28 16 2 C -0.15 -1.71 9.89 -36.03 -0.36 -2.06 16 3 C 0.09 1.05 5.15 36.01 0.19 1.23 16 4 O -0.30 -4.88 9.26 -19.44 -0.18 -5.06 16 5 C 0.13 2.09 6.66 -39.22 -0.26 1.83 16 6 C -0.21 -2.90 9.04 -39.44 -0.36 -3.26 16 7 C -0.09 -1.18 10.04 -39.61 -0.40 -1.58 16 8 C -0.16 -2.13 10.04 -39.57 -0.40 -2.53 16 9 C -0.07 -1.07 8.87 -39.61 -0.35 -1.42 16 10 C -0.10 -1.71 4.94 -104.47 -0.52 -2.23 16 11 C 0.13 2.63 2.37 -68.86 -0.16 2.46 16 12 H 0.06 1.39 7.23 -51.93 -0.38 1.01 16 13 C -0.12 -2.25 9.33 37.16 0.35 -1.91 16 14 N -0.68 -14.32 4.77 -102.17 -0.49 -14.81 16 15 C 0.22 5.34 1.80 -68.86 -0.12 5.21 16 16 H 0.03 0.93 7.03 -51.93 -0.36 0.57 16 17 C -0.54 -14.81 8.30 -34.44 -0.29 -15.09 16 18 H 0.05 1.44 7.73 -52.49 -0.41 1.04 16 19 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 20 N -0.89 -25.27 11.30 55.43 0.63 -24.64 16 21 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.11 -2.53 5.44 -26.73 -0.15 -2.67 16 26 C -0.13 -2.78 9.72 37.15 0.36 -2.42 16 27 H 0.10 0.83 7.90 -52.49 -0.41 0.42 16 28 H 0.11 0.89 8.06 -52.49 -0.42 0.46 16 29 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 30 H 0.06 0.70 7.38 -51.93 -0.38 0.32 16 31 H 0.07 0.70 7.66 -51.93 -0.40 0.30 16 32 H 0.12 1.33 6.30 -52.49 -0.33 1.00 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.14 2.16 7.00 -52.48 -0.37 1.79 16 36 H 0.06 1.09 7.38 -51.93 -0.38 0.70 16 37 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.33 6.90 7.05 -39.29 -0.28 6.62 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 2.40 5.98 -51.93 -0.31 2.09 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.93 7.87 -51.93 -0.41 0.52 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -28.96 365.14 -9.06 -38.02 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.36 Total: 8.34 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -2.14 Total: -23.92 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.14 Total: -39.45 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.18 Total: -5.06 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.96 -9.06 -38.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.551 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds