Wall clock time and date at job start Tue Mar 31 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99997 * 2 1 4 4 O 1.42899 * 109.46830 * 134.99942 * 3 2 1 5 5 C 1.35905 * 116.99623 * 180.02562 * 4 3 2 6 6 C 1.38747 * 120.05662 * 359.95268 * 5 4 3 7 7 C 1.38122 * 119.94201 * 179.97438 * 6 5 4 8 8 C 1.38279 * 120.05795 * 0.03170 * 7 6 5 9 9 C 1.38239 * 120.11361 * 0.02562 * 8 7 6 10 10 C 1.38169 * 120.05390 * 359.96215 * 9 8 7 11 11 C 1.50704 * 120.02666 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46734 * 145.00292 * 11 10 9 13 13 C 1.52999 * 109.47114 * 265.00208 * 11 10 9 14 14 N 1.46897 * 109.47437 * 24.99962 * 11 10 9 15 15 C 1.46898 * 111.00036 * 156.81491 * 14 11 10 16 16 H 1.08991 * 109.47195 * 34.21428 * 15 14 11 17 17 C 1.50704 * 109.47146 * 274.21596 * 15 14 11 18 18 H 1.08002 * 119.99984 * 359.97438 * 17 15 14 19 19 C 1.37872 * 119.99810 * 180.02562 * 17 15 14 20 20 N 1.31512 * 120.00147 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 119.99878 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47402 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.47076 * 209.99691 * 21 19 17 24 24 H 1.48496 * 109.47478 * 329.99793 * 21 19 17 25 25 C 1.53001 * 109.47078 * 154.21527 * 15 14 11 26 26 C 1.52994 * 109.46995 * 296.14026 * 25 15 14 27 27 H 1.08000 * 120.00407 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00133 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99721 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47035 * 15.00070 * 3 2 1 31 31 H 1.08995 * 109.47028 * 254.99959 * 3 2 1 32 32 H 1.07997 * 120.03063 * 0.05025 * 6 5 4 33 33 H 1.08002 * 119.96884 * 180.29898 * 7 6 5 34 34 H 1.08004 * 119.94583 * 180.02562 * 8 7 6 35 35 H 1.08008 * 119.97647 * 179.97438 * 9 8 7 36 36 H 1.09006 * 109.47249 * 185.12968 * 13 11 10 37 37 H 1.09010 * 109.46952 * 305.12433 * 13 11 10 38 38 H 1.08997 * 109.47453 * 65.12219 * 13 11 10 39 39 H 1.00906 * 110.99933 * 32.86624 * 14 11 10 40 40 H 0.97000 * 120.00104 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.47005 * 56.14053 * 25 15 14 42 42 H 1.09001 * 109.47187 * 176.13261 * 25 15 14 43 43 H 1.09006 * 109.46880 * 185.21441 * 26 25 15 44 44 H 1.09005 * 109.47330 * 305.20646 * 26 25 15 45 45 H 1.08999 * 109.47877 * 65.21287 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9090 2.3453 1.0790 6 6 3.6591 3.4667 0.3012 7 6 4.4554 4.5877 0.4318 8 6 5.5013 4.5927 1.3364 9 6 5.7531 3.4763 2.1117 10 6 4.9594 2.3525 1.9849 11 6 5.2348 1.1355 2.8300 12 1 4.2927 0.6520 3.0888 13 6 6.1113 0.1573 2.0453 14 7 5.9313 1.5397 4.0585 15 6 5.7388 0.5469 5.1239 16 1 5.6902 -0.4503 4.6868 17 6 4.4537 0.8378 5.8555 18 1 3.8415 1.6767 5.5589 19 6 4.0602 0.0337 6.9040 20 7 4.8059 -0.9874 7.2655 21 14 2.4677 0.3947 7.8113 22 1 1.3501 -0.3336 7.1587 23 1 2.5906 -0.0495 9.2230 24 1 2.1963 1.8542 7.7735 25 6 6.9111 0.6173 6.1046 26 6 8.2032 0.2280 5.3836 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3855 2.1161 0.2660 31 1 2.4755 1.4867 -0.9926 32 1 2.8420 3.4636 -0.4049 33 1 4.2583 5.4626 -0.1700 34 1 6.1226 5.4704 1.4373 35 1 6.5709 3.4824 2.8172 36 1 6.2352 -0.7608 2.6196 37 1 5.6356 -0.0721 1.0916 38 1 7.0873 0.6079 1.8652 39 1 5.6322 2.4553 4.3592 40 1 4.5293 -1.5529 8.0034 41 1 7.0019 1.6328 6.4900 42 1 6.7349 -0.0707 6.9315 43 1 9.0222 0.1882 6.1018 44 1 8.0795 -0.7503 4.9190 45 1 8.4285 0.9687 4.6163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:04 Heat of formation + Delta-G solvation = -15.604917 kcal Electronic energy + Delta-G solvation = -23465.656753 eV Core-core repulsion = 20254.968685 eV Total energy + Delta-G solvation = -3210.688068 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28922 -38.94611 -37.87071 -35.32233 -34.94995 -33.46436 -31.27983 -30.95150 -29.79176 -27.93723 -27.44103 -24.99199 -24.08241 -22.97817 -21.61044 -21.14483 -20.62045 -19.07255 -18.61402 -17.40108 -16.96740 -16.80650 -16.62691 -15.84605 -15.41638 -15.37080 -15.28950 -14.84139 -14.55938 -14.35281 -13.82534 -13.67972 -13.58742 -13.27766 -13.13306 -13.07349 -12.87552 -12.83194 -12.52592 -12.48975 -12.17995 -12.12981 -12.01760 -11.94783 -11.57913 -11.48296 -11.25023 -10.95056 -10.45953 -10.45005 -9.71466 -9.09226 -8.99492 -8.05815 -6.27064 0.46076 0.56746 1.11343 1.34450 1.35724 1.45319 2.38605 2.48476 2.89456 3.13602 3.60074 3.79744 3.91566 4.02293 4.14167 4.18699 4.27701 4.39785 4.49558 4.57427 4.60799 4.62998 4.69309 4.79674 4.84896 4.89169 4.94678 5.00383 5.12349 5.16164 5.21753 5.36978 5.42639 5.46601 5.53038 5.56287 5.58079 5.64245 5.65205 5.71671 5.82084 5.99092 6.14307 6.22703 6.41598 6.54380 6.83124 7.02809 7.43694 8.90833 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011371 B = 0.005643 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.725241 B = 4960.848697 C = 6224.337697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.180 4.180 3 C 0.083 3.917 4 O -0.332 6.332 5 C 0.112 3.888 6 C -0.213 4.213 7 C -0.085 4.085 8 C -0.158 4.158 9 C -0.078 4.078 10 C -0.130 4.130 11 C 0.141 3.859 12 H 0.015 0.985 13 C -0.113 4.113 14 N -0.667 5.667 15 C 0.225 3.775 16 H -0.001 1.001 17 C -0.557 4.557 18 H 0.042 0.958 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.945 3.055 22 H -0.281 1.281 23 H -0.278 1.278 24 H -0.272 1.272 25 C -0.100 4.100 26 C -0.122 4.122 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.035 0.965 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.328 0.672 40 H 0.262 0.738 41 H 0.029 0.971 42 H 0.059 0.941 43 H 0.044 0.956 44 H 0.028 0.972 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.258 8.515 -16.504 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.198 4.198 3 C 0.009 3.991 4 O -0.246 6.246 5 C 0.067 3.933 6 C -0.231 4.231 7 C -0.102 4.102 8 C -0.176 4.176 9 C -0.096 4.096 10 C -0.131 4.131 11 C 0.031 3.969 12 H 0.033 0.967 13 C -0.171 4.171 14 N -0.296 5.296 15 C 0.116 3.884 16 H 0.016 0.984 17 C -0.596 4.596 18 H 0.060 0.940 19 C -0.178 4.178 20 N -0.549 5.549 21 Si 0.771 3.229 22 H -0.207 1.207 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.139 4.139 26 C -0.179 4.179 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.165 0.835 33 H 0.173 0.827 34 H 0.165 0.835 35 H 0.154 0.846 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.145 0.855 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.630 7.902 -16.475 18.461 hybrid contribution -1.965 -0.187 1.020 2.221 sum -4.594 7.715 -15.455 17.875 Atomic orbital electron populations 1.24093 0.94855 1.03740 0.96962 1.22732 0.96418 0.97588 1.03036 1.22001 0.87570 0.97298 0.92243 1.86151 1.42787 1.36194 1.59510 1.19051 0.91216 0.87047 0.95994 1.21432 1.04413 0.93794 1.03469 1.21287 0.93767 0.97752 0.97437 1.21370 0.99772 0.98782 0.97705 1.21083 0.98296 0.91673 0.98575 1.19512 0.96761 0.97378 0.99424 1.19924 0.94544 0.92661 0.89800 0.96735 1.21566 0.99633 0.97673 0.98265 1.61037 1.58748 1.05452 1.04387 1.18919 0.91865 0.89933 0.87708 0.98352 1.22139 1.07857 1.12892 1.16691 0.93991 1.25610 0.99621 0.94866 0.97737 1.69999 1.38647 1.17333 1.28872 0.85758 0.80523 0.78430 0.78146 1.20696 1.20330 1.19624 1.21334 0.94291 0.98989 0.99303 1.21534 0.96746 0.99926 0.99707 0.86931 0.86250 0.87165 0.90734 0.89602 0.83499 0.82727 0.83462 0.84593 0.94604 0.92696 0.91715 0.85512 0.92883 0.95223 0.92216 0.93739 0.95293 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 14.31 67.78 0.97 -1.89 16 2 C -0.18 -4.04 9.89 25.65 0.25 -3.78 16 3 C 0.08 1.93 5.15 71.24 0.37 2.30 16 4 O -0.33 -10.97 9.26 -92.48 -0.86 -11.83 16 5 C 0.11 3.60 6.66 22.50 0.15 3.75 16 6 C -0.21 -5.18 9.04 22.36 0.20 -4.98 16 7 C -0.08 -1.80 10.04 22.25 0.22 -1.57 16 8 C -0.16 -3.73 10.04 22.28 0.22 -3.51 16 9 C -0.08 -2.35 8.87 22.25 0.20 -2.15 16 10 C -0.13 -4.55 4.94 -19.77 -0.10 -4.65 16 11 C 0.14 5.83 2.37 44.17 0.10 5.93 16 12 H 0.01 0.73 7.23 -2.38 -0.02 0.71 16 13 C -0.11 -4.29 9.33 71.98 0.67 -3.62 16 14 N -0.67 -28.94 4.77 -477.16 -2.27 -31.21 16 15 C 0.22 11.62 1.80 44.17 0.08 11.70 16 16 H 0.00 -0.09 7.03 -2.39 -0.02 -0.10 16 17 C -0.56 -31.58 8.30 25.60 0.21 -31.37 16 18 H 0.04 2.41 7.73 -2.91 -0.02 2.39 16 19 C 0.02 1.23 5.30 84.65 0.45 1.68 16 20 N -0.91 -53.39 11.30 21.44 0.24 -53.15 16 21 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 25 C -0.10 -4.94 5.44 30.59 0.17 -4.78 16 26 C -0.12 -5.01 9.72 71.98 0.70 -4.31 16 27 H 0.11 1.66 7.90 -2.91 -0.02 1.64 16 28 H 0.12 1.80 8.06 -2.91 -0.02 1.77 16 29 H 0.11 2.63 8.06 -2.91 -0.02 2.60 16 30 H 0.07 1.52 7.38 -2.39 -0.02 1.50 16 31 H 0.09 1.62 7.66 -2.39 -0.02 1.60 16 32 H 0.15 2.71 6.30 -2.91 -0.02 2.70 16 33 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 34 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.14 4.10 7.00 -2.91 -0.02 4.08 16 36 H 0.03 1.46 7.38 -2.38 -0.02 1.44 16 37 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.33 14.21 7.05 -89.69 -0.63 13.57 16 40 H 0.26 14.62 8.31 -92.71 -0.77 13.84 16 41 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 3.31 5.98 -2.39 -0.01 3.29 16 43 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.06 2.30 7.87 -2.39 -0.02 2.28 16 Total: -1.00 -64.99 365.14 4.33 -60.66 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.32 Total: 29.73 kcal Atomic # 6 Polarization: -46.13 SS G_CDS: 4.87 Total: -41.26 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -2.03 Total: -84.36 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.86 Total: -11.83 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.99 4.33 -60.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.056 kcal (2) G-P(sol) polarization free energy of solvation -64.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds