Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 120.00221 * 2 1 4 4 O 1.42897 * 109.47579 * 134.99919 * 3 2 1 5 5 C 1.35901 * 117.00199 * 180.02562 * 4 3 2 6 6 C 1.38749 * 120.05339 * 359.97438 * 5 4 3 7 7 C 1.38124 * 119.93892 * 179.97438 * 6 5 4 8 8 C 1.38282 * 120.06015 * 359.97438 * 7 6 5 9 9 C 1.38245 * 120.11047 * 0.02562 * 8 7 6 10 10 C 1.38163 * 120.05510 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.02677 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47210 * 145.02330 * 11 10 9 13 13 C 1.52992 * 109.47246 * 265.02428 * 11 10 9 14 14 N 1.46903 * 109.47356 * 25.02561 * 11 10 9 15 15 C 1.46897 * 111.00037 * 159.95102 * 14 11 10 16 16 H 1.09003 * 109.47182 * 26.74293 * 15 14 11 17 17 C 1.50701 * 109.46589 * 146.73582 * 15 14 11 18 18 H 1.07997 * 120.00596 * 4.63793 * 17 15 14 19 19 C 1.37884 * 119.99861 * 184.63768 * 17 15 14 20 20 N 1.31509 * 120.00249 * 192.78329 * 19 17 15 21 21 Si 1.86806 * 119.99733 * 12.78358 * 19 17 15 22 22 H 1.48501 * 109.46792 * 91.82840 * 21 19 17 23 23 H 1.48499 * 109.46929 * 211.82500 * 21 19 17 24 24 H 1.48492 * 109.47228 * 331.82583 * 21 19 17 25 25 C 1.52998 * 109.47639 * 266.73530 * 15 14 11 26 26 C 1.52999 * 109.46925 * 65.79453 * 25 15 14 27 27 H 1.08001 * 120.00108 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00015 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.00108 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46920 * 14.99330 * 3 2 1 31 31 H 1.09000 * 109.47297 * 255.00039 * 3 2 1 32 32 H 1.07998 * 120.03328 * 359.95791 * 6 5 4 33 33 H 1.08003 * 119.96798 * 179.72415 * 7 6 5 34 34 H 1.08001 * 119.94937 * 179.97438 * 8 7 6 35 35 H 1.08002 * 119.97324 * 180.02562 * 9 8 7 36 36 H 1.08997 * 109.47574 * 60.00341 * 13 11 10 37 37 H 1.09004 * 109.47133 * 179.97438 * 13 11 10 38 38 H 1.08999 * 109.47493 * 299.99718 * 13 11 10 39 39 H 1.00904 * 110.99700 * 36.00328 * 14 11 10 40 40 H 0.96999 * 120.00627 * 180.02562 * 20 19 17 41 41 H 1.08995 * 109.47313 * 185.79101 * 25 15 14 42 42 H 1.08997 * 109.46992 * 305.79731 * 25 15 14 43 43 H 1.09000 * 109.47366 * 62.74520 * 26 25 15 44 44 H 1.09001 * 109.47409 * 182.75192 * 26 25 15 45 45 H 1.09007 * 109.47080 * 302.75121 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9091 2.3454 1.0789 6 6 3.6589 3.4669 0.3013 7 6 4.4552 4.5879 0.4320 8 6 5.5007 4.5933 1.3370 9 6 5.7520 3.4770 2.1129 10 6 4.9584 2.3532 1.9860 11 6 5.2333 1.1365 2.8317 12 1 4.2911 0.6529 3.0897 13 6 6.1108 0.1584 2.0481 14 7 5.9285 1.5413 4.0609 15 6 5.7973 0.5140 5.1026 16 1 5.6549 -0.4607 4.6358 17 6 7.0471 0.4899 5.9444 18 1 7.8261 1.2186 5.7756 19 6 7.1961 -0.4626 6.9302 20 7 8.1524 -0.3395 7.8244 21 14 6.0393 -1.9280 6.9954 22 1 6.6216 -3.0531 6.2206 23 1 5.8490 -2.3458 8.4076 24 1 4.7281 -1.5500 6.4100 25 6 4.5921 0.8365 5.9882 26 6 3.3081 0.7193 5.1645 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3855 2.1161 0.2659 31 1 2.4755 1.4868 -0.9926 32 1 2.8424 3.4634 -0.4056 33 1 4.2636 5.4596 -0.1762 34 1 6.1224 5.4706 1.4374 35 1 6.5689 3.4837 2.8194 36 1 7.0530 0.6419 1.7902 37 1 6.3100 -0.7214 2.6600 38 1 5.5950 -0.1421 1.1361 39 1 5.5920 2.4342 4.3892 40 1 8.2575 -1.0097 8.5177 41 1 4.5548 0.1342 6.8209 42 1 4.6854 1.8519 6.3731 43 1 3.1898 -0.3081 4.8202 44 1 2.4537 0.9963 5.7820 45 1 3.3662 1.3863 4.3042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = 13.323223 kcal Electronic energy + Delta-G solvation = -23628.248761 eV Core-core repulsion = 20418.815112 eV Total energy + Delta-G solvation = -3209.433649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32410 -37.93883 -36.79767 -34.29846 -33.47884 -31.82136 -30.04291 -29.84836 -28.44689 -26.90633 -26.58644 -23.36853 -22.44152 -22.01852 -20.54803 -19.86641 -19.55088 -18.05571 -16.81630 -16.46704 -15.93403 -15.63924 -15.16181 -14.54801 -14.50321 -14.30919 -13.84612 -13.55583 -13.40186 -13.00991 -12.72153 -12.62111 -12.58394 -12.05192 -11.78932 -11.65780 -11.47664 -11.35794 -11.32378 -11.17127 -10.94001 -10.75564 -10.69588 -10.52118 -10.06956 -9.84568 -9.78296 -9.31793 -9.19509 -8.69679 -8.34535 -8.02973 -7.27741 -5.99524 -3.92088 1.45275 1.54607 1.78953 3.30786 3.32438 3.41546 3.44376 3.88435 4.49115 4.55118 4.73816 4.76587 4.92100 4.98998 5.13691 5.17136 5.23908 5.28695 5.41191 5.51952 5.60053 5.75149 5.87128 5.93340 5.95236 6.02039 6.10563 6.19533 6.22636 6.27158 6.30383 6.41308 6.49301 6.55982 6.61935 6.65760 6.70508 6.83941 6.88489 6.95478 7.02544 7.27642 7.46065 7.83070 8.03392 8.43338 8.78681 9.16016 9.66805 11.14056 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.005015 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.745100 B = 5581.642406 C = 6749.994782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.152 4.152 3 C 0.087 3.913 4 O -0.305 6.305 5 C 0.128 3.872 6 C -0.215 4.215 7 C -0.091 4.091 8 C -0.158 4.158 9 C -0.066 4.066 10 C -0.103 4.103 11 C 0.119 3.881 12 H 0.059 0.941 13 C -0.128 4.128 14 N -0.666 5.666 15 C 0.193 3.807 16 H 0.028 0.972 17 C -0.495 4.495 18 H 0.080 0.920 19 C 0.071 3.929 20 N -0.898 5.898 21 Si 0.856 3.144 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.251 1.251 25 C -0.154 4.154 26 C -0.158 4.158 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.329 0.671 40 H 0.261 0.739 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.038 0.962 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.603 5.777 -16.972 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 C 0.012 3.988 4 O -0.219 6.219 5 C 0.082 3.918 6 C -0.233 4.233 7 C -0.110 4.110 8 C -0.176 4.176 9 C -0.084 4.084 10 C -0.104 4.104 11 C 0.009 3.991 12 H 0.077 0.923 13 C -0.186 4.186 14 N -0.297 5.297 15 C 0.084 3.916 16 H 0.046 0.954 17 C -0.534 4.534 18 H 0.098 0.902 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.684 3.316 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.176 1.176 25 C -0.193 4.193 26 C -0.215 4.215 27 H 0.116 0.884 28 H 0.125 0.875 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.163 0.837 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.147 0.853 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.895 5.269 -16.921 21.917 hybrid contribution -1.654 -0.609 0.235 1.778 sum -14.548 4.660 -16.686 22.623 Atomic orbital electron populations 1.23853 0.95431 1.02440 0.99504 1.22703 0.95660 0.97979 1.00667 1.21774 0.88121 0.96604 0.92312 1.86141 1.41825 1.35676 1.58216 1.18832 0.91333 0.86004 0.95610 1.21101 1.03813 0.94569 1.03848 1.20853 0.94991 0.97147 0.97974 1.21095 0.99182 0.99011 0.98359 1.21133 0.98261 0.91147 0.97854 1.19552 0.94832 0.97530 0.98523 1.20481 0.96427 0.91680 0.90508 0.92337 1.21703 0.99463 0.98945 0.98498 1.60807 1.58737 1.05724 1.04405 1.19564 0.93379 0.90467 0.88200 0.95391 1.20972 1.02332 1.15559 1.14489 0.90197 1.24888 0.95303 0.97905 0.94935 1.69943 1.33745 1.34901 1.15128 0.87357 0.82869 0.84076 0.77338 1.20788 1.21587 1.17562 1.22698 0.95106 1.01549 0.99972 1.22041 0.98514 1.00810 1.00107 0.88364 0.87500 0.86167 0.91767 0.91254 0.86079 0.86358 0.86078 0.83713 0.92329 0.92168 0.93641 0.85292 0.92888 0.92026 0.92650 0.93653 0.94282 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 14.31 29.02 0.42 -0.95 16 2 C -0.15 -1.43 9.89 -36.02 -0.36 -1.79 16 3 C 0.09 0.88 5.15 36.01 0.19 1.07 16 4 O -0.30 -4.27 9.26 -19.43 -0.18 -4.45 16 5 C 0.13 1.84 6.66 -39.22 -0.26 1.57 16 6 C -0.21 -2.59 9.04 -39.43 -0.36 -2.95 16 7 C -0.09 -1.05 10.04 -39.61 -0.40 -1.45 16 8 C -0.16 -1.97 10.04 -39.56 -0.40 -2.37 16 9 C -0.07 -0.97 8.91 -39.61 -0.35 -1.32 16 10 C -0.10 -1.63 4.94 -104.47 -0.52 -2.15 16 11 C 0.12 2.13 1.60 -68.87 -0.11 2.02 16 12 H 0.06 1.10 4.74 -51.93 -0.25 0.86 16 13 C -0.13 -2.27 9.32 37.15 0.35 -1.93 16 14 N -0.67 -13.47 5.07 -102.17 -0.52 -13.99 16 15 C 0.19 4.49 1.57 -68.87 -0.11 4.39 16 16 H 0.03 0.69 5.55 -51.93 -0.29 0.40 16 17 C -0.50 -13.87 9.30 -34.44 -0.32 -14.19 16 18 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 19 C 0.07 2.04 5.36 -17.82 -0.10 1.94 16 20 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 21 Si 0.86 21.30 25.76 -169.99 -4.38 16.92 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 H -0.25 -5.86 5.32 56.52 0.30 -5.56 16 25 C -0.15 -3.33 4.55 -26.73 -0.12 -3.46 16 26 C -0.16 -2.92 8.72 37.16 0.32 -2.59 16 27 H 0.10 0.66 7.90 -52.49 -0.41 0.24 16 28 H 0.11 0.70 8.06 -52.49 -0.42 0.27 16 29 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.06 0.58 7.38 -51.93 -0.38 0.20 16 31 H 0.07 0.61 7.66 -51.93 -0.40 0.21 16 32 H 0.12 1.17 6.30 -52.49 -0.33 0.83 16 33 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.15 2.21 7.06 -52.49 -0.37 1.84 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.15 7.19 -51.93 -0.37 0.77 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.33 6.36 7.10 -39.29 -0.28 6.08 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.06 1.42 4.70 -51.93 -0.24 1.18 16 42 H 0.05 1.18 8.00 -51.93 -0.42 0.76 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.94 5.72 -51.92 -0.30 0.64 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -30.70 353.45 -8.18 -38.88 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -7.08 Total: 8.26 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -2.12 Total: -24.14 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.26 Total: -40.81 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.18 Total: -4.45 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.38 Total: 16.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.70 -8.18 -38.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.203 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds