Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 120.00221 * 2 1 4 4 O 1.42897 * 109.47579 * 134.99919 * 3 2 1 5 5 C 1.35901 * 117.00199 * 180.02562 * 4 3 2 6 6 C 1.38749 * 120.05339 * 359.97438 * 5 4 3 7 7 C 1.38124 * 119.93892 * 179.97438 * 6 5 4 8 8 C 1.38282 * 120.06015 * 359.97438 * 7 6 5 9 9 C 1.38245 * 120.11047 * 0.02562 * 8 7 6 10 10 C 1.38163 * 120.05510 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.02677 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47210 * 145.02330 * 11 10 9 13 13 C 1.52992 * 109.47246 * 265.02428 * 11 10 9 14 14 N 1.46903 * 109.47356 * 25.02561 * 11 10 9 15 15 C 1.46897 * 111.00037 * 159.95102 * 14 11 10 16 16 H 1.09003 * 109.47182 * 26.74293 * 15 14 11 17 17 C 1.50701 * 109.46589 * 146.73582 * 15 14 11 18 18 H 1.07997 * 120.00596 * 4.63793 * 17 15 14 19 19 C 1.37884 * 119.99861 * 184.63768 * 17 15 14 20 20 N 1.31509 * 120.00249 * 192.78329 * 19 17 15 21 21 Si 1.86806 * 119.99733 * 12.78358 * 19 17 15 22 22 H 1.48501 * 109.46792 * 91.82840 * 21 19 17 23 23 H 1.48499 * 109.46929 * 211.82500 * 21 19 17 24 24 H 1.48492 * 109.47228 * 331.82583 * 21 19 17 25 25 C 1.52998 * 109.47639 * 266.73530 * 15 14 11 26 26 C 1.52999 * 109.46925 * 65.79453 * 25 15 14 27 27 H 1.08001 * 120.00108 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00015 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.00108 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46920 * 14.99330 * 3 2 1 31 31 H 1.09000 * 109.47297 * 255.00039 * 3 2 1 32 32 H 1.07998 * 120.03328 * 359.95791 * 6 5 4 33 33 H 1.08003 * 119.96798 * 179.72415 * 7 6 5 34 34 H 1.08001 * 119.94937 * 179.97438 * 8 7 6 35 35 H 1.08002 * 119.97324 * 180.02562 * 9 8 7 36 36 H 1.08997 * 109.47574 * 60.00341 * 13 11 10 37 37 H 1.09004 * 109.47133 * 179.97438 * 13 11 10 38 38 H 1.08999 * 109.47493 * 299.99718 * 13 11 10 39 39 H 1.00904 * 110.99700 * 36.00328 * 14 11 10 40 40 H 0.96999 * 120.00627 * 180.02562 * 20 19 17 41 41 H 1.08995 * 109.47313 * 185.79101 * 25 15 14 42 42 H 1.08997 * 109.46992 * 305.79731 * 25 15 14 43 43 H 1.09000 * 109.47366 * 62.74520 * 26 25 15 44 44 H 1.09001 * 109.47409 * 182.75192 * 26 25 15 45 45 H 1.09007 * 109.47080 * 302.75121 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9091 2.3454 1.0789 6 6 3.6589 3.4669 0.3013 7 6 4.4552 4.5879 0.4320 8 6 5.5007 4.5933 1.3370 9 6 5.7520 3.4770 2.1129 10 6 4.9584 2.3532 1.9860 11 6 5.2333 1.1365 2.8317 12 1 4.2911 0.6529 3.0897 13 6 6.1108 0.1584 2.0481 14 7 5.9285 1.5413 4.0609 15 6 5.7973 0.5140 5.1026 16 1 5.6549 -0.4607 4.6358 17 6 7.0471 0.4899 5.9444 18 1 7.8261 1.2186 5.7756 19 6 7.1961 -0.4626 6.9302 20 7 8.1524 -0.3395 7.8244 21 14 6.0393 -1.9280 6.9954 22 1 6.6216 -3.0531 6.2206 23 1 5.8490 -2.3458 8.4076 24 1 4.7281 -1.5500 6.4100 25 6 4.5921 0.8365 5.9882 26 6 3.3081 0.7193 5.1645 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3855 2.1161 0.2659 31 1 2.4755 1.4868 -0.9926 32 1 2.8424 3.4634 -0.4056 33 1 4.2636 5.4596 -0.1762 34 1 6.1224 5.4706 1.4374 35 1 6.5689 3.4837 2.8194 36 1 7.0530 0.6419 1.7902 37 1 6.3100 -0.7214 2.6600 38 1 5.5950 -0.1421 1.1361 39 1 5.5920 2.4342 4.3892 40 1 8.2575 -1.0097 8.5177 41 1 4.5548 0.1342 6.8209 42 1 4.6854 1.8519 6.3731 43 1 3.1898 -0.3081 4.8202 44 1 2.4537 0.9963 5.7820 45 1 3.3662 1.3863 4.3042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = -5.059866 kcal Electronic energy + Delta-G solvation = -23629.045911 eV Core-core repulsion = 20418.815112 eV Total energy + Delta-G solvation = -3210.230800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34097 -39.18020 -38.11206 -35.21779 -34.90639 -33.79837 -31.28757 -30.97774 -29.83066 -28.66820 -27.45702 -24.85470 -23.94823 -23.06848 -21.75988 -21.31423 -20.62990 -19.16201 -18.68275 -17.46608 -17.05425 -16.87623 -16.61647 -15.98290 -15.61823 -15.42500 -15.29927 -14.89878 -14.79271 -14.36462 -14.18449 -13.77732 -13.60326 -13.57122 -13.34579 -13.00665 -12.92575 -12.63825 -12.56362 -12.47210 -12.32443 -12.14119 -12.07322 -11.93535 -11.67741 -11.46842 -11.28571 -11.10635 -10.54776 -10.42457 -9.73591 -9.05787 -8.91228 -8.24309 -6.21232 0.44078 0.55286 1.14545 1.32987 1.37266 1.45804 2.37441 2.46676 2.87659 3.09360 3.46696 3.79133 3.89047 4.04903 4.14539 4.18957 4.25086 4.28961 4.34406 4.40475 4.45568 4.49337 4.57201 4.58914 4.61441 4.81334 4.89376 4.89997 4.97292 4.99379 5.06402 5.15019 5.18761 5.23659 5.37131 5.42882 5.52881 5.56877 5.61951 5.67315 5.69481 5.75056 5.96373 6.13811 6.52177 6.76595 6.81539 6.84656 7.42150 8.93086 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.005015 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.745100 B = 5581.642406 C = 6749.994782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.178 4.178 3 C 0.082 3.918 4 O -0.326 6.326 5 C 0.121 3.879 6 C -0.211 4.211 7 C -0.083 4.083 8 C -0.161 4.161 9 C -0.081 4.081 10 C -0.128 4.128 11 C 0.126 3.874 12 H 0.053 0.947 13 C -0.124 4.124 14 N -0.672 5.672 15 C 0.201 3.799 16 H 0.022 0.978 17 C -0.499 4.499 18 H 0.035 0.965 19 C 0.015 3.985 20 N -0.948 5.948 21 Si 0.920 3.080 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.225 1.225 25 C -0.151 4.151 26 C -0.146 4.146 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.050 0.950 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.333 0.667 40 H 0.263 0.737 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.045 0.955 44 H 0.062 0.938 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.882 6.463 -19.166 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.196 4.196 3 C 0.008 3.992 4 O -0.241 6.241 5 C 0.075 3.925 6 C -0.229 4.229 7 C -0.100 4.100 8 C -0.179 4.179 9 C -0.099 4.099 10 C -0.129 4.129 11 C 0.017 3.983 12 H 0.071 0.929 13 C -0.182 4.182 14 N -0.303 5.303 15 C 0.091 3.909 16 H 0.040 0.960 17 C -0.538 4.538 18 H 0.053 0.947 19 C -0.181 4.181 20 N -0.588 5.588 21 Si 0.745 3.255 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.148 1.148 25 C -0.191 4.191 26 C -0.203 4.203 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.159 0.841 35 H 0.145 0.855 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.152 0.848 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.194 5.968 -19.143 25.774 hybrid contribution -0.612 -0.711 0.823 1.248 sum -16.806 5.257 -18.320 25.411 Atomic orbital electron populations 1.24088 0.94891 1.03696 0.96933 1.22706 0.96300 0.97516 1.03071 1.22010 0.87529 0.97444 0.92194 1.86110 1.42697 1.35856 1.59411 1.18902 0.91035 0.86952 0.95617 1.21445 1.04366 0.93692 1.03442 1.21277 0.93628 0.97998 0.97143 1.21339 0.99839 0.98749 0.97950 1.21072 0.98128 0.92126 0.98576 1.19368 0.96734 0.96946 0.99866 1.20357 0.95532 0.92922 0.89521 0.92889 1.21661 0.99483 0.98123 0.98911 1.60632 1.59951 1.05161 1.04599 1.19309 0.91903 0.91148 0.88552 0.95998 1.21247 1.03185 1.14266 1.15063 0.94709 1.25690 0.97183 1.00783 0.94489 1.70091 1.36255 1.36215 1.16288 0.86320 0.81844 0.79909 0.77455 1.20679 1.21357 1.14826 1.22553 0.95994 1.01001 0.99531 1.21913 0.97279 1.01100 1.00044 0.86985 0.86356 0.87052 0.90408 0.89998 0.83242 0.82885 0.84107 0.85510 0.93085 0.94159 0.91882 0.84840 0.92821 0.93328 0.92867 0.93582 0.91945 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 14.31 67.79 0.97 -1.04 16 2 C -0.18 -2.98 9.89 25.65 0.25 -2.72 16 3 C 0.08 1.46 5.15 71.24 0.37 1.82 16 4 O -0.33 -8.53 9.26 -92.43 -0.86 -9.39 16 5 C 0.12 3.23 6.66 22.51 0.15 3.38 16 6 C -0.21 -4.36 9.04 22.37 0.20 -4.16 16 7 C -0.08 -1.58 10.04 22.25 0.22 -1.36 16 8 C -0.16 -3.65 10.04 22.28 0.22 -3.43 16 9 C -0.08 -2.35 8.91 22.25 0.20 -2.15 16 10 C -0.13 -3.97 4.94 -19.77 -0.10 -4.07 16 11 C 0.13 4.52 1.60 44.17 0.07 4.59 16 12 H 0.05 1.97 4.74 -2.39 -0.01 1.96 16 13 C -0.12 -4.46 9.32 71.98 0.67 -3.79 16 14 N -0.67 -27.91 5.07 -477.17 -2.42 -30.33 16 15 C 0.20 9.48 1.57 44.17 0.07 9.55 16 16 H 0.02 1.08 5.55 -2.39 -0.01 1.06 16 17 C -0.50 -29.12 9.30 25.60 0.24 -28.88 16 18 H 0.03 2.28 8.06 -2.91 -0.02 2.26 16 19 C 0.02 0.91 5.36 84.66 0.45 1.36 16 20 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 21 Si 0.92 44.60 25.76 68.60 1.77 46.36 16 22 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.23 -9.89 5.32 99.48 0.53 -9.36 16 25 C -0.15 -6.45 4.55 30.59 0.14 -6.32 16 26 C -0.15 -5.10 8.72 71.98 0.63 -4.47 16 27 H 0.11 1.09 7.90 -2.91 -0.02 1.07 16 28 H 0.12 1.20 8.06 -2.91 -0.02 1.18 16 29 H 0.11 2.01 8.06 -2.91 -0.02 1.98 16 30 H 0.08 1.14 7.38 -2.39 -0.02 1.12 16 31 H 0.08 1.20 7.66 -2.39 -0.02 1.18 16 32 H 0.15 2.18 6.30 -2.91 -0.02 2.16 16 33 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.13 4.04 7.06 -2.91 -0.02 4.02 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.04 1.57 7.19 -2.38 -0.02 1.55 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.33 13.23 7.10 -89.69 -0.64 12.59 16 40 H 0.26 15.74 8.31 -92.71 -0.77 14.96 16 41 H 0.05 2.18 4.70 -2.39 -0.01 2.17 16 42 H 0.05 2.26 8.00 -2.39 -0.02 2.24 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.06 1.96 5.72 -2.38 -0.01 1.95 16 Total: -1.00 -68.93 353.45 3.71 -65.22 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: 0.16 Total: 29.89 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 4.76 Total: -41.66 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -2.12 Total: -90.43 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.86 Total: -9.39 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.77 Total: 46.36 kcal Total: -68.93 3.71 -65.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.160 kcal (2) G-P(sol) polarization free energy of solvation -68.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds