Wall clock time and date at job start Tue Mar 31 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 H 1.08992 * 109.46877 * 332.47032 * 3 2 1 5 5 C 1.50700 * 109.46880 * 212.47423 * 3 2 1 6 6 H 1.08012 * 119.99489 * 239.99657 * 5 3 2 7 7 C 1.37874 * 120.00418 * 60.00097 * 5 3 2 8 8 N 1.31511 * 119.99597 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99777 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47333 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46921 * 120.00285 * 9 7 5 12 12 H 1.48506 * 109.46690 * 239.99381 * 9 7 5 13 13 N 1.46893 * 109.47144 * 92.47177 * 3 2 1 14 14 C 1.46901 * 111.00019 * 288.57906 * 13 3 2 15 15 C 1.50698 * 112.90887 * 79.66898 * 14 13 3 16 16 C 1.38265 * 119.94063 * 208.34417 * 15 14 13 17 17 C 1.38150 * 120.05402 * 179.72454 * 16 15 14 18 18 C 1.38731 * 119.93934 * 0.57367 * 17 16 15 19 19 O 1.35896 * 120.05344 * 179.68324 * 18 17 16 20 20 C 1.42902 * 117.00243 * 0.02562 * 19 18 17 21 21 C 1.38736 * 119.89212 * 359.70345 * 18 17 16 22 22 C 1.38143 * 119.94174 * 359.97438 * 21 18 17 23 23 C 1.53783 * 113.61019 * 308.41329 * 14 13 3 24 24 C 1.53778 * 87.08344 * 270.88337 * 23 14 13 25 25 C 1.53780 * 87.08441 * 334.56858 * 24 23 14 26 26 H 1.08999 * 109.47013 * 197.71886 * 1 2 3 27 27 H 1.09001 * 109.47347 * 317.71948 * 1 2 3 28 28 H 1.09005 * 109.47148 * 77.72189 * 1 2 3 29 29 H 1.09005 * 109.47301 * 239.99781 * 2 1 3 30 30 H 1.08997 * 109.47249 * 120.00076 * 2 1 3 31 31 H 0.97005 * 119.99450 * 180.02562 * 8 7 5 32 32 H 1.00902 * 111.00071 * 52.53255 * 13 3 2 33 33 H 1.08001 * 119.97324 * 359.97438 * 16 15 14 34 34 H 1.07993 * 120.02809 * 180.29966 * 17 16 15 35 35 H 1.09002 * 109.47521 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.47190 * 300.00139 * 20 19 18 37 37 H 1.09007 * 109.46999 * 59.99868 * 20 19 18 38 38 H 1.07999 * 120.02558 * 180.02562 * 21 18 17 39 39 H 1.08003 * 119.97289 * 180.02562 * 22 21 18 40 40 H 1.09005 * 113.61172 * 156.33577 * 23 14 13 41 41 H 1.09002 * 113.61406 * 25.44184 * 23 14 13 42 42 H 1.09009 * 113.61024 * 89.12155 * 24 23 14 43 43 H 1.08994 * 113.61620 * 220.01615 * 24 23 14 44 44 H 1.09002 * 113.61335 * 139.97618 * 25 24 23 45 45 H 1.08994 * 113.61419 * 270.80193 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3019 2.0888 -0.4750 5 6 3.3375 1.5165 -0.7629 6 1 4.2355 1.8576 -0.2691 7 6 3.3783 1.1488 -2.0911 8 7 2.2850 0.7330 -2.6921 9 14 4.9867 1.2412 -3.0367 10 1 6.0610 1.7362 -2.1391 11 1 5.3445 -0.1100 -3.5379 12 1 4.8329 2.1703 -4.1850 13 7 2.2595 1.8842 1.3836 14 6 0.9823 2.0850 2.0811 15 6 0.3699 0.7963 2.5661 16 6 -1.0026 0.6900 2.6949 17 6 -1.5669 -0.4921 3.1339 18 6 -0.7543 -1.5691 3.4570 19 8 -1.3066 -2.7309 3.8952 20 6 -2.7312 -2.7736 3.9989 21 6 0.6229 -1.4580 3.3324 22 6 1.1818 -0.2760 2.8866 23 6 -0.0022 2.9855 1.3164 24 6 0.6436 4.1762 2.0445 25 6 1.0328 3.1854 3.1543 26 1 -0.3633 -0.9789 0.3128 27 1 -0.3634 0.7603 0.6914 28 1 -0.3634 0.2185 -1.0042 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.3138 0.4740 -3.6265 32 1 2.8455 1.2319 1.8828 33 1 -1.6344 1.5306 2.4483 34 1 -2.6393 -0.5762 3.2297 35 1 -3.0401 -3.7547 4.3596 36 1 -3.0678 -2.0076 4.6975 37 1 -3.1724 -2.5909 3.0190 38 1 1.2575 -2.2953 3.5829 39 1 2.2539 -0.1891 2.7890 40 1 -1.0451 2.8213 1.5877 41 1 0.1597 2.9928 0.2385 42 1 1.4987 4.5989 1.5169 43 1 -0.0728 4.9322 2.3657 44 1 2.0303 3.3541 3.5601 45 1 0.2735 3.0769 3.9287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:07 Heat of formation + Delta-G solvation = 30.229251 kcal Electronic energy + Delta-G solvation = -24585.213690 eV Core-core repulsion = 21376.513141 eV Total energy + Delta-G solvation = -3208.700549 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.64943 -39.16458 -36.56082 -35.02850 -31.99422 -31.02378 -30.01995 -29.77492 -27.45635 -26.23106 -25.34569 -23.82032 -22.41398 -22.28048 -21.05416 -19.76317 -18.35477 -17.82319 -16.61896 -16.11870 -15.72800 -15.66994 -14.84037 -14.69876 -14.39864 -13.91094 -13.68772 -13.40162 -13.16559 -12.86558 -12.56857 -12.35865 -11.96762 -11.83619 -11.76771 -11.68967 -11.21665 -11.00603 -10.81908 -10.76073 -10.69234 -10.53024 -10.38937 -10.22510 -9.83187 -9.81439 -9.64930 -9.40589 -8.77103 -8.59355 -8.18709 -7.65485 -7.24601 -5.95549 -3.99483 1.63718 1.72253 3.32567 3.37999 3.40832 3.45312 4.02827 4.45113 4.88592 4.97587 5.04206 5.08802 5.10016 5.16538 5.23237 5.35375 5.37421 5.38100 5.44877 5.67220 5.71713 5.86733 5.95576 6.06771 6.19119 6.27718 6.35980 6.39893 6.50499 6.52343 6.58139 6.62160 6.69579 6.74082 6.87562 7.00851 7.02558 7.08702 7.25034 7.39643 7.52395 7.57423 7.86748 7.91820 8.30792 8.51353 8.69975 9.08857 9.65004 11.10496 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.005478 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.672886 B = 5110.058412 C = 6009.106697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.215 3.785 4 H 0.047 0.953 5 C -0.502 4.502 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.655 5.655 14 C 0.134 3.866 15 C -0.099 4.099 16 C -0.080 4.080 17 C -0.208 4.208 18 C 0.111 3.889 19 O -0.323 6.323 20 C 0.030 3.970 21 C -0.148 4.148 22 C -0.070 4.070 23 C -0.141 4.141 24 C -0.127 4.127 25 C -0.124 4.124 26 H 0.020 0.980 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.030 0.970 31 H 0.258 0.742 32 H 0.329 0.671 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.043 -1.463 12.668 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C 0.108 3.892 4 H 0.064 0.936 5 C -0.541 4.541 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.284 5.284 14 C 0.041 3.959 15 C -0.101 4.101 16 C -0.099 4.099 17 C -0.227 4.227 18 C 0.066 3.934 19 O -0.237 6.237 20 C -0.065 4.065 21 C -0.167 4.167 22 C -0.089 4.089 23 C -0.178 4.178 24 C -0.164 4.164 25 C -0.162 4.162 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.912 -1.019 12.353 15.266 hybrid contribution 0.160 -1.090 -0.684 1.297 sum -8.751 -2.109 11.669 14.738 Atomic orbital electron populations 1.22237 0.98895 0.99241 1.00678 1.22320 0.93328 1.01460 1.00853 1.19324 0.96760 0.90454 0.82706 0.93567 1.21199 0.95201 1.42804 0.94856 0.92153 1.24905 0.96214 0.95546 0.97611 1.69982 1.26804 1.44754 1.11259 0.86540 0.84105 0.77426 0.79904 1.19794 1.21310 1.21212 1.60899 1.10151 1.52752 1.04647 1.20909 0.91546 0.88770 0.94640 1.20435 0.93466 0.97139 0.99070 1.20802 0.94658 0.96804 0.97595 1.21070 0.99166 0.94408 1.08037 1.18919 0.92759 0.85065 0.96620 1.86031 1.22271 1.33515 1.81835 1.22968 0.79285 1.02985 1.01289 1.20289 0.91728 0.99014 1.05680 1.20723 0.99980 0.91848 0.96316 1.23313 0.97101 0.95760 1.01632 1.22650 1.00522 0.95643 0.97589 1.22988 1.01304 0.96063 0.95869 0.96092 0.91901 0.93933 0.89910 0.95160 0.93248 0.85226 0.85880 0.86198 0.88715 0.92989 0.92844 0.85821 0.85495 0.90682 0.89558 0.89394 0.92781 0.91230 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.14 37.15 0.30 -2.97 16 2 C -0.14 -3.26 4.71 -26.73 -0.13 -3.39 16 3 C 0.21 5.12 2.02 -68.87 -0.14 4.98 16 4 H 0.05 1.22 5.21 -51.93 -0.27 0.95 16 5 C -0.50 -13.48 8.82 -34.44 -0.30 -13.78 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.59 5.06 -17.82 -0.09 1.50 16 8 N -0.89 -25.08 11.59 55.43 0.64 -24.44 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.66 -13.17 6.02 -94.59 -0.57 -13.74 16 14 C 0.13 2.27 0.75 -131.93 -0.10 2.17 16 15 C -0.10 -1.60 2.51 -104.60 -0.26 -1.87 16 16 C -0.08 -1.20 7.37 -39.60 -0.29 -1.49 16 17 C -0.21 -2.94 9.04 -39.43 -0.36 -3.30 16 18 C 0.11 1.68 6.69 -39.22 -0.26 1.42 16 19 O -0.32 -4.51 10.50 -19.41 -0.20 -4.71 16 20 C 0.03 0.29 9.81 101.05 0.99 1.28 16 21 C -0.15 -2.34 9.99 -39.43 -0.39 -2.73 16 22 C -0.07 -1.15 6.51 -39.61 -0.26 -1.41 16 23 C -0.14 -2.34 5.45 -25.92 -0.14 -2.48 16 24 C -0.13 -1.91 7.99 -25.92 -0.21 -2.11 16 25 C -0.12 -1.83 7.43 -25.91 -0.19 -2.02 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.20 2.06 -51.93 -0.11 1.09 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 2.24 5.98 -51.93 -0.31 1.93 16 30 H 0.03 0.66 4.62 -51.93 -0.24 0.42 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.33 6.43 6.39 -39.29 -0.25 6.18 16 33 H 0.12 1.66 5.81 -52.49 -0.30 1.35 16 34 H 0.12 1.40 6.30 -52.49 -0.33 1.07 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 37 H 0.05 0.49 7.66 -51.92 -0.40 0.09 16 38 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.13 2.06 5.84 -52.48 -0.31 1.75 16 40 H 0.07 1.09 5.71 -51.93 -0.30 0.80 16 41 H 0.09 1.70 5.74 -51.93 -0.30 1.40 16 42 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 331.36 15.07 4.99 4.99 Total: -1.00 -28.76 331.36 -8.42 -37.18 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.44 Total: 10.62 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -1.83 Total: -26.20 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.07 Total: -38.18 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.20 Total: -4.71 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.76 -8.42 -37.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.414 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds