Wall clock time and date at job start Tue Mar 31 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 H 1.08992 * 109.46877 * 332.47032 * 3 2 1 5 5 C 1.50700 * 109.46880 * 212.47423 * 3 2 1 6 6 H 1.08012 * 119.99489 * 239.99657 * 5 3 2 7 7 C 1.37874 * 120.00418 * 60.00097 * 5 3 2 8 8 N 1.31511 * 119.99597 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99777 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47333 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46921 * 120.00285 * 9 7 5 12 12 H 1.48506 * 109.46690 * 239.99381 * 9 7 5 13 13 N 1.46893 * 109.47144 * 92.47177 * 3 2 1 14 14 C 1.46901 * 111.00019 * 288.57906 * 13 3 2 15 15 C 1.50698 * 112.90887 * 79.66898 * 14 13 3 16 16 C 1.38265 * 119.94063 * 208.34417 * 15 14 13 17 17 C 1.38150 * 120.05402 * 179.72454 * 16 15 14 18 18 C 1.38731 * 119.93934 * 0.57367 * 17 16 15 19 19 O 1.35896 * 120.05344 * 179.68324 * 18 17 16 20 20 C 1.42902 * 117.00243 * 0.02562 * 19 18 17 21 21 C 1.38736 * 119.89212 * 359.70345 * 18 17 16 22 22 C 1.38143 * 119.94174 * 359.97438 * 21 18 17 23 23 C 1.53783 * 113.61019 * 308.41329 * 14 13 3 24 24 C 1.53778 * 87.08344 * 270.88337 * 23 14 13 25 25 C 1.53780 * 87.08441 * 334.56858 * 24 23 14 26 26 H 1.08999 * 109.47013 * 197.71886 * 1 2 3 27 27 H 1.09001 * 109.47347 * 317.71948 * 1 2 3 28 28 H 1.09005 * 109.47148 * 77.72189 * 1 2 3 29 29 H 1.09005 * 109.47301 * 239.99781 * 2 1 3 30 30 H 1.08997 * 109.47249 * 120.00076 * 2 1 3 31 31 H 0.97005 * 119.99450 * 180.02562 * 8 7 5 32 32 H 1.00902 * 111.00071 * 52.53255 * 13 3 2 33 33 H 1.08001 * 119.97324 * 359.97438 * 16 15 14 34 34 H 1.07993 * 120.02809 * 180.29966 * 17 16 15 35 35 H 1.09002 * 109.47521 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.47190 * 300.00139 * 20 19 18 37 37 H 1.09007 * 109.46999 * 59.99868 * 20 19 18 38 38 H 1.07999 * 120.02558 * 180.02562 * 21 18 17 39 39 H 1.08003 * 119.97289 * 180.02562 * 22 21 18 40 40 H 1.09005 * 113.61172 * 156.33577 * 23 14 13 41 41 H 1.09002 * 113.61406 * 25.44184 * 23 14 13 42 42 H 1.09009 * 113.61024 * 89.12155 * 24 23 14 43 43 H 1.08994 * 113.61620 * 220.01615 * 24 23 14 44 44 H 1.09002 * 113.61335 * 139.97618 * 25 24 23 45 45 H 1.08994 * 113.61419 * 270.80193 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3019 2.0888 -0.4750 5 6 3.3375 1.5165 -0.7629 6 1 4.2355 1.8576 -0.2691 7 6 3.3783 1.1488 -2.0911 8 7 2.2850 0.7330 -2.6921 9 14 4.9867 1.2412 -3.0367 10 1 6.0610 1.7362 -2.1391 11 1 5.3445 -0.1100 -3.5379 12 1 4.8329 2.1703 -4.1850 13 7 2.2595 1.8842 1.3836 14 6 0.9823 2.0850 2.0811 15 6 0.3699 0.7963 2.5661 16 6 -1.0026 0.6900 2.6949 17 6 -1.5669 -0.4921 3.1339 18 6 -0.7543 -1.5691 3.4570 19 8 -1.3066 -2.7309 3.8952 20 6 -2.7312 -2.7736 3.9989 21 6 0.6229 -1.4580 3.3324 22 6 1.1818 -0.2760 2.8866 23 6 -0.0022 2.9855 1.3164 24 6 0.6436 4.1762 2.0445 25 6 1.0328 3.1854 3.1543 26 1 -0.3633 -0.9789 0.3128 27 1 -0.3634 0.7603 0.6914 28 1 -0.3634 0.2185 -1.0042 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.3138 0.4740 -3.6265 32 1 2.8455 1.2319 1.8828 33 1 -1.6344 1.5306 2.4483 34 1 -2.6393 -0.5762 3.2297 35 1 -3.0401 -3.7547 4.3596 36 1 -3.0678 -2.0076 4.6975 37 1 -3.1724 -2.5909 3.0190 38 1 1.2575 -2.2953 3.5829 39 1 2.2539 -0.1891 2.7890 40 1 -1.0451 2.8213 1.5877 41 1 0.1597 2.9928 0.2385 42 1 1.4987 4.5989 1.5169 43 1 -0.0728 4.9322 2.3657 44 1 2.0303 3.3541 3.5601 45 1 0.2735 3.0769 3.9287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:07 Heat of formation + Delta-G solvation = 13.592711 kcal Electronic energy + Delta-G solvation = -24585.935105 eV Core-core repulsion = 21376.513141 eV Total energy + Delta-G solvation = -3209.421963 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.92439 -40.30163 -37.70620 -36.79062 -33.91906 -32.29242 -31.53890 -31.11941 -28.46208 -27.96136 -26.64617 -25.22232 -24.07495 -23.59216 -22.24714 -21.51715 -19.62947 -19.02089 -18.44441 -17.44432 -16.87550 -16.75351 -16.58171 -16.12813 -15.62227 -15.56331 -15.02071 -14.58226 -14.46298 -14.40391 -14.16976 -13.53262 -13.50447 -13.19204 -13.17234 -12.92624 -12.79372 -12.68745 -12.55629 -12.48879 -12.03452 -11.91983 -11.79394 -11.68040 -11.59223 -11.33547 -11.02353 -10.94591 -10.67540 -10.35632 -9.72555 -8.96449 -8.76260 -8.05064 -6.15294 0.46293 0.53801 1.40692 1.43315 1.54394 2.44037 2.45513 2.84490 3.23759 3.52866 3.77390 3.89466 3.95371 4.02556 4.08449 4.20066 4.35642 4.41696 4.45152 4.54637 4.59141 4.64243 4.70293 4.74255 4.77621 4.82243 4.90452 4.98764 5.12142 5.16077 5.22046 5.27978 5.34911 5.41428 5.42827 5.50066 5.55022 5.55146 5.73877 5.77999 5.83403 5.87439 5.96118 6.36812 6.52718 6.70125 6.93640 7.05425 7.53495 8.99623 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.005478 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.672886 B = 5110.058412 C = 6009.106697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.227 3.773 4 H 0.020 0.980 5 C -0.519 4.519 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.914 5.914 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.660 5.660 14 C 0.125 3.875 15 C -0.112 4.112 16 C -0.084 4.084 17 C -0.203 4.203 18 C 0.107 3.893 19 O -0.339 6.339 20 C 0.019 3.981 21 C -0.162 4.162 22 C -0.084 4.084 23 C -0.144 4.144 24 C -0.121 4.121 25 C -0.110 4.110 26 H 0.025 0.975 27 H 0.087 0.913 28 H 0.017 0.983 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.257 0.743 32 H 0.330 0.670 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.128 0.872 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.517 -1.352 14.362 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.119 3.881 4 H 0.038 0.962 5 C -0.558 4.558 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.289 5.289 14 C 0.033 3.967 15 C -0.114 4.114 16 C -0.102 4.102 17 C -0.222 4.222 18 C 0.062 3.938 19 O -0.253 6.253 20 C -0.075 4.075 21 C -0.181 4.181 22 C -0.102 4.102 23 C -0.181 4.181 24 C -0.158 4.158 25 C -0.148 4.148 26 H 0.044 0.956 27 H 0.105 0.895 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.390 -0.906 14.066 17.511 hybrid contribution 0.551 -1.179 -1.136 1.727 sum -9.839 -2.085 12.930 16.381 Atomic orbital electron populations 1.22119 0.97340 1.00296 0.99863 1.22138 0.94671 1.00754 0.99355 1.18971 0.94621 0.90126 0.84416 0.96226 1.21551 0.96176 1.42550 0.95542 0.93000 1.25600 0.99059 0.95363 0.98541 1.70106 1.28491 1.45471 1.11327 0.85604 0.80689 0.77325 0.78549 1.19322 1.21058 1.20954 1.60749 1.12392 1.52449 1.03317 1.21025 0.90212 0.90036 0.95470 1.20373 0.94265 0.96594 1.00182 1.21015 0.94099 0.97801 0.97294 1.21369 1.00605 0.93533 1.06688 1.19058 0.92708 0.85840 0.96152 1.86019 1.24800 1.32970 1.81502 1.23307 0.76945 1.05068 1.02173 1.20435 0.92656 0.98994 1.06014 1.20722 0.99778 0.92471 0.97253 1.23361 0.98590 0.96782 0.99350 1.22578 1.00200 0.95931 0.97098 1.22951 1.02041 0.94204 0.95629 0.95555 0.89459 0.96336 0.93963 0.93960 0.93401 0.85053 0.84075 0.83331 0.86403 0.91442 0.92327 0.85362 0.86291 0.88080 0.93238 0.91696 0.89825 0.91448 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.98 8.14 71.98 0.59 -5.40 16 2 C -0.13 -6.20 4.71 30.59 0.14 -6.05 16 3 C 0.23 11.16 2.02 44.17 0.09 11.25 16 4 H 0.02 1.09 5.21 -2.39 -0.01 1.08 16 5 C -0.52 -28.74 8.82 25.60 0.23 -28.52 16 6 H 0.05 2.89 7.81 -2.90 -0.02 2.86 16 7 C 0.01 0.72 5.06 84.65 0.43 1.15 16 8 N -0.91 -53.18 11.59 21.45 0.25 -52.93 16 9 Si 0.95 44.58 29.54 68.60 2.03 46.61 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 N -0.66 -26.93 6.02 -453.18 -2.73 -29.66 16 14 C 0.12 4.12 0.75 3.31 0.00 4.12 16 15 C -0.11 -3.47 2.51 -19.85 -0.05 -3.52 16 16 C -0.08 -2.27 7.37 22.26 0.16 -2.10 16 17 C -0.20 -5.12 9.04 22.37 0.20 -4.92 16 18 C 0.11 3.03 6.69 22.51 0.15 3.18 16 19 O -0.34 -8.67 10.50 -92.38 -0.97 -9.64 16 20 C 0.02 0.31 9.81 113.37 1.11 1.42 16 21 C -0.16 -4.96 9.99 22.37 0.22 -4.73 16 22 C -0.08 -2.70 6.51 22.25 0.14 -2.55 16 23 C -0.14 -4.61 5.45 31.12 0.17 -4.44 16 24 C -0.12 -3.43 7.99 31.12 0.25 -3.18 16 25 C -0.11 -3.02 7.43 31.12 0.23 -2.78 16 26 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.09 3.29 2.06 -2.39 0.00 3.29 16 28 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.04 2.36 5.98 -2.38 -0.01 2.35 16 30 H 0.04 1.89 4.62 -2.39 -0.01 1.87 16 31 H 0.26 14.35 8.31 -92.70 -0.77 13.57 16 32 H 0.33 13.17 6.39 -89.69 -0.57 12.59 16 33 H 0.14 3.25 5.81 -2.91 -0.02 3.23 16 34 H 0.15 2.82 6.30 -2.91 -0.02 2.80 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 37 H 0.06 0.88 7.66 -2.38 -0.02 0.86 16 38 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 39 H 0.12 3.91 5.84 -2.91 -0.02 3.89 16 40 H 0.10 2.66 5.71 -2.38 -0.01 2.65 16 41 H 0.05 1.98 5.74 -2.39 -0.01 1.97 16 42 H 0.06 2.14 8.14 -2.38 -0.02 2.13 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.10 2.20 8.10 -2.39 -0.02 2.18 16 Total: -1.00 -63.50 331.36 3.09 -60.41 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.44 Total: 32.29 kcal Atomic # 6 Polarization: -51.16 SS G_CDS: 4.07 Total: -47.09 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -2.48 Total: -82.58 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.97 Total: -9.64 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -63.50 3.09 -60.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.003 kcal (2) G-P(sol) polarization free energy of solvation -63.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds