Wall clock time and date at job start Tue Mar 31 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47139 * 2 1 4 4 H 1.08998 * 109.47198 * 32.42232 * 3 2 1 5 5 C 1.50702 * 109.47339 * 152.42572 * 3 2 1 6 6 H 1.08004 * 120.00022 * 94.68953 * 5 3 2 7 7 C 1.37872 * 120.00095 * 274.68947 * 5 3 2 8 8 N 1.31517 * 119.99879 * 6.14214 * 7 5 3 9 9 Si 1.86806 * 120.00235 * 186.14225 * 7 5 3 10 10 H 1.48498 * 109.46800 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.46911 * 300.00146 * 9 7 5 12 12 H 1.48492 * 109.46815 * 60.00095 * 9 7 5 13 13 N 1.46899 * 109.47018 * 272.42292 * 3 2 1 14 14 C 1.46908 * 110.99947 * 64.14572 * 13 3 2 15 15 C 1.52995 * 115.55039 * 266.41740 * 14 13 3 16 16 C 1.50700 * 109.47074 * 298.06222 * 15 14 13 17 17 C 1.38267 * 119.94273 * 270.99322 * 16 15 14 18 18 C 1.38146 * 120.05527 * 179.72789 * 17 16 15 19 19 C 1.38733 * 119.94165 * 0.54535 * 18 17 16 20 20 O 1.35902 * 120.05537 * 179.75071 * 19 18 17 21 21 C 1.42901 * 116.99769 * 359.97438 * 20 19 18 22 22 C 1.38733 * 119.88825 * 359.72223 * 19 18 17 23 23 C 1.38140 * 119.94279 * 0.02562 * 22 19 18 24 24 C 1.53002 * 117.49795 * 120.70678 * 14 13 3 25 25 C 1.52998 * 60.00047 * 252.51181 * 24 14 13 26 26 H 1.08998 * 109.47337 * 291.57165 * 1 2 3 27 27 H 1.09000 * 109.47135 * 51.57648 * 1 2 3 28 28 H 1.09000 * 109.46983 * 171.57447 * 1 2 3 29 29 H 1.09004 * 109.47147 * 240.00016 * 2 1 3 30 30 H 1.09003 * 109.47303 * 120.00051 * 2 1 3 31 31 H 0.97004 * 120.00123 * 355.09860 * 8 7 5 32 32 H 1.00910 * 111.00135 * 188.09872 * 13 3 2 33 33 H 1.09000 * 109.47197 * 58.06068 * 15 14 13 34 34 H 1.08997 * 109.47302 * 178.06120 * 15 14 13 35 35 H 1.07996 * 119.97346 * 359.97438 * 17 16 15 36 36 H 1.07997 * 120.02914 * 180.26691 * 18 17 16 37 37 H 1.09004 * 109.46949 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.46867 * 299.99584 * 21 20 19 39 39 H 1.08992 * 109.47801 * 60.00071 * 21 20 19 40 40 H 1.08004 * 120.01981 * 179.97438 * 22 19 18 41 41 H 1.08003 * 119.96773 * 180.02562 * 23 22 19 42 42 H 1.09005 * 117.49903 * 0.02562 * 24 14 13 43 43 H 1.08994 * 117.49430 * 145.02113 * 24 14 13 44 44 H 1.08996 * 117.50234 * 252.50747 * 25 24 14 45 45 H 1.09003 * 117.49650 * 107.49145 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.3432 2.0741 0.5510 5 6 3.3948 1.4963 0.6577 6 1 4.2899 1.4472 0.0552 7 6 3.4918 1.6082 2.0284 8 7 2.4084 1.5464 2.7715 9 14 5.1619 1.8475 2.8303 10 1 4.9954 1.9379 4.3032 11 1 6.0385 0.6948 2.5015 12 1 5.7793 3.0993 2.3237 13 7 2.1480 1.9236 -1.3838 14 6 0.8282 1.9782 -2.0267 15 6 0.4317 0.7356 -2.8262 16 6 1.4053 0.5353 -3.9590 17 6 1.1741 1.1370 -5.1822 18 6 2.0679 0.9596 -6.2205 19 6 3.1924 0.1678 -6.0384 20 8 4.0706 -0.0124 -7.0598 21 6 3.7732 0.6431 -8.2943 22 6 3.4192 -0.4394 -4.8118 23 6 2.5250 -0.2545 -3.7752 24 6 0.3517 3.3357 -2.5474 25 6 -0.2840 2.7313 -1.2939 26 1 -0.3634 0.3778 0.9556 27 1 -0.3633 0.6387 -0.8051 28 1 -0.3633 -1.0166 -0.1506 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5351 1.4936 2.3524 32 1 2.6051 2.8225 -1.4194 33 1 0.4491 -0.1373 -2.1736 34 1 -0.5724 0.8678 -3.2292 35 1 0.2960 1.7495 -5.3249 36 1 1.8891 1.4333 -7.1744 37 1 4.5517 0.4163 -9.0228 38 1 2.8118 0.2924 -8.6694 39 1 3.7292 1.7200 -8.1325 40 1 4.2937 -1.0566 -4.6678 41 1 2.7014 -0.7267 -2.8199 42 1 1.0177 4.1882 -2.4134 43 1 -0.2442 3.3436 -3.4600 44 1 -1.2981 2.3417 -1.3817 45 1 -0.0363 3.1863 -0.3347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:48 Heat of formation + Delta-G solvation = 10.472653 kcal Electronic energy + Delta-G solvation = -23761.541285 eV Core-core repulsion = 20551.984025 eV Total energy + Delta-G solvation = -3209.557259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.05677 -38.94534 -37.09846 -34.63276 -31.78058 -31.44282 -30.77593 -30.20080 -27.81632 -26.26543 -25.30375 -22.77397 -22.45196 -22.29786 -21.27949 -20.02420 -18.54348 -17.95764 -16.81896 -16.12183 -15.75914 -15.70947 -14.94979 -14.73662 -14.26124 -14.00374 -13.72730 -13.61716 -13.23696 -13.04055 -12.66046 -12.44421 -12.35578 -11.98400 -11.88409 -11.55674 -11.31169 -11.20826 -11.05367 -10.79660 -10.75712 -10.60196 -10.55434 -10.35068 -10.09272 -9.91755 -9.57157 -9.15142 -8.71823 -8.57899 -8.19509 -7.83983 -7.33566 -6.34198 -4.05340 1.62138 1.68633 3.33717 3.45687 3.46371 3.65409 3.98442 4.19651 4.52853 4.85312 4.97124 5.03690 5.03912 5.08394 5.16106 5.19213 5.28782 5.33479 5.40203 5.52902 5.65257 5.66366 5.88579 5.91959 6.01500 6.07568 6.14005 6.16900 6.21708 6.31311 6.38576 6.43211 6.46531 6.52503 6.60596 6.82400 6.91594 7.00354 7.08469 7.10841 7.16340 7.53242 7.56521 8.01789 8.18025 8.54960 8.64496 8.91455 9.68317 11.04310 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.004648 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.228996 B = 6022.940815 C = 6927.102458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.106 4.106 3 C 0.206 3.794 4 H 0.005 0.995 5 C -0.591 4.591 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 1.068 2.932 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.641 5.641 14 C 0.077 3.923 15 C -0.041 4.041 16 C -0.087 4.087 17 C -0.084 4.084 18 C -0.212 4.212 19 C 0.111 3.889 20 O -0.322 6.322 21 C 0.030 3.970 22 C -0.151 4.151 23 C -0.049 4.049 24 C -0.191 4.191 25 C -0.208 4.208 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.270 0.730 32 H 0.334 0.666 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.753 -0.729 -17.516 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.144 4.144 3 C 0.098 3.902 4 H 0.023 0.977 5 C -0.630 4.630 6 H 0.073 0.927 7 C -0.184 4.184 8 N -0.549 5.549 9 Si 0.896 3.104 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.216 1.216 13 N -0.271 5.271 14 C -0.016 4.016 15 C -0.078 4.078 16 C -0.087 4.087 17 C -0.102 4.102 18 C -0.231 4.231 19 C 0.067 3.933 20 O -0.236 6.236 21 C -0.065 4.065 22 C -0.169 4.169 23 C -0.066 4.066 24 C -0.229 4.229 25 C -0.247 4.247 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.153 0.847 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.143 0.857 41 H 0.151 0.849 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.637 -1.346 -16.286 16.552 hybrid contribution -1.342 1.019 -1.186 2.060 sum -3.978 -0.327 -17.471 17.922 Atomic orbital electron populations 1.22425 0.98985 0.99879 1.01766 1.21738 0.92319 0.99886 1.00476 1.19319 0.96463 0.91261 0.83135 0.97711 1.21948 0.92195 1.54855 0.93997 0.92687 1.25766 1.04641 0.93735 0.94306 1.70794 0.98999 1.46395 1.38666 0.83556 0.74268 0.76530 0.76019 1.20999 1.21460 1.21571 1.60497 1.13833 1.32046 1.20739 1.21614 0.90454 0.90802 0.98780 1.20340 0.95474 0.97888 0.94143 1.19604 0.96990 0.98012 0.94075 1.20742 0.98527 0.98443 0.92455 1.21048 0.96848 1.04671 1.00512 1.18985 0.89544 0.96470 0.88315 1.86047 1.47478 1.69684 1.20393 1.22965 1.01937 0.97190 0.84430 1.20426 1.01758 1.03815 0.90935 1.20937 0.92109 0.95998 0.97602 1.23294 1.04293 0.97460 0.97814 1.23488 0.98682 1.06031 0.96494 0.93911 0.91192 0.94898 0.93259 0.92513 0.91863 0.84726 0.88970 0.91932 0.86624 0.86271 0.88681 0.93007 0.92890 0.85673 0.84924 0.89323 0.89382 0.89352 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 8.07 37.16 0.30 -2.97 16 2 C -0.11 -2.33 4.89 -26.74 -0.13 -2.46 16 3 C 0.21 4.84 1.72 -68.87 -0.12 4.73 16 4 H 0.01 0.14 5.08 -51.93 -0.26 -0.13 16 5 C -0.59 -16.00 8.36 -34.44 -0.29 -16.29 16 6 H 0.05 1.53 7.82 -52.48 -0.41 1.12 16 7 C 0.02 0.56 5.45 -17.82 -0.10 0.46 16 8 N -0.91 -26.81 13.63 55.43 0.76 -26.06 16 9 Si 1.07 24.99 29.91 -169.99 -5.08 19.91 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.64 -13.01 6.27 -94.25 -0.59 -13.60 16 14 C 0.08 1.28 1.07 -131.60 -0.14 1.14 16 15 C -0.04 -0.62 4.11 -27.89 -0.11 -0.73 16 16 C -0.09 -1.31 5.00 -104.60 -0.52 -1.83 16 17 C -0.08 -1.13 9.70 -39.60 -0.38 -1.52 16 18 C -0.21 -2.78 9.04 -39.43 -0.36 -3.13 16 19 C 0.11 1.60 6.69 -39.22 -0.26 1.34 16 20 O -0.32 -4.28 10.50 -19.43 -0.20 -4.48 16 21 C 0.03 0.26 9.81 101.05 0.99 1.26 16 22 C -0.15 -2.30 9.99 -39.43 -0.39 -2.69 16 23 C -0.05 -0.78 9.69 -39.61 -0.38 -1.16 16 24 C -0.19 -2.84 9.93 -26.73 -0.27 -3.10 16 25 C -0.21 -3.37 7.53 -26.73 -0.20 -3.57 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.20 2.47 -51.93 -0.13 1.07 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.04 5.91 -51.93 -0.31 0.73 16 30 H 0.06 1.42 7.86 -51.93 -0.41 1.01 16 31 H 0.27 7.89 6.64 -40.82 -0.27 7.62 16 32 H 0.33 7.02 8.41 -39.29 -0.33 6.69 16 33 H 0.09 1.49 4.37 -51.93 -0.23 1.26 16 34 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.26 6.30 -52.49 -0.33 0.93 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 39 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 40 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 41 H 0.13 2.24 6.94 -52.48 -0.36 1.87 16 42 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 1.29 7.82 -51.93 -0.41 0.88 16 45 H 0.09 1.75 7.01 -51.93 -0.36 1.39 16 LS Contribution 349.40 15.07 5.27 5.27 Total: -1.00 -29.50 349.40 -9.00 -38.50 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.78 Total: 11.00 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: -2.37 Total: -30.53 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.16 Total: -39.66 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.20 Total: -4.48 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.50 -9.00 -38.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.976 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds