Wall clock time and date at job start Tue Mar 31 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47139 * 2 1 4 4 H 1.08998 * 109.47198 * 32.42232 * 3 2 1 5 5 C 1.50702 * 109.47339 * 152.42572 * 3 2 1 6 6 H 1.08004 * 120.00022 * 94.68953 * 5 3 2 7 7 C 1.37872 * 120.00095 * 274.68947 * 5 3 2 8 8 N 1.31517 * 119.99879 * 6.14214 * 7 5 3 9 9 Si 1.86806 * 120.00235 * 186.14225 * 7 5 3 10 10 H 1.48498 * 109.46800 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.46911 * 300.00146 * 9 7 5 12 12 H 1.48492 * 109.46815 * 60.00095 * 9 7 5 13 13 N 1.46899 * 109.47018 * 272.42292 * 3 2 1 14 14 C 1.46908 * 110.99947 * 64.14572 * 13 3 2 15 15 C 1.52995 * 115.55039 * 266.41740 * 14 13 3 16 16 C 1.50700 * 109.47074 * 298.06222 * 15 14 13 17 17 C 1.38267 * 119.94273 * 270.99322 * 16 15 14 18 18 C 1.38146 * 120.05527 * 179.72789 * 17 16 15 19 19 C 1.38733 * 119.94165 * 0.54535 * 18 17 16 20 20 O 1.35902 * 120.05537 * 179.75071 * 19 18 17 21 21 C 1.42901 * 116.99769 * 359.97438 * 20 19 18 22 22 C 1.38733 * 119.88825 * 359.72223 * 19 18 17 23 23 C 1.38140 * 119.94279 * 0.02562 * 22 19 18 24 24 C 1.53002 * 117.49795 * 120.70678 * 14 13 3 25 25 C 1.52998 * 60.00047 * 252.51181 * 24 14 13 26 26 H 1.08998 * 109.47337 * 291.57165 * 1 2 3 27 27 H 1.09000 * 109.47135 * 51.57648 * 1 2 3 28 28 H 1.09000 * 109.46983 * 171.57447 * 1 2 3 29 29 H 1.09004 * 109.47147 * 240.00016 * 2 1 3 30 30 H 1.09003 * 109.47303 * 120.00051 * 2 1 3 31 31 H 0.97004 * 120.00123 * 355.09860 * 8 7 5 32 32 H 1.00910 * 111.00135 * 188.09872 * 13 3 2 33 33 H 1.09000 * 109.47197 * 58.06068 * 15 14 13 34 34 H 1.08997 * 109.47302 * 178.06120 * 15 14 13 35 35 H 1.07996 * 119.97346 * 359.97438 * 17 16 15 36 36 H 1.07997 * 120.02914 * 180.26691 * 18 17 16 37 37 H 1.09004 * 109.46949 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.46867 * 299.99584 * 21 20 19 39 39 H 1.08992 * 109.47801 * 60.00071 * 21 20 19 40 40 H 1.08004 * 120.01981 * 179.97438 * 22 19 18 41 41 H 1.08003 * 119.96773 * 180.02562 * 23 22 19 42 42 H 1.09005 * 117.49903 * 0.02562 * 24 14 13 43 43 H 1.08994 * 117.49430 * 145.02113 * 24 14 13 44 44 H 1.08996 * 117.50234 * 252.50747 * 25 24 14 45 45 H 1.09003 * 117.49650 * 107.49145 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.3432 2.0741 0.5510 5 6 3.3948 1.4963 0.6577 6 1 4.2899 1.4472 0.0552 7 6 3.4918 1.6082 2.0284 8 7 2.4084 1.5464 2.7715 9 14 5.1619 1.8475 2.8303 10 1 4.9954 1.9379 4.3032 11 1 6.0385 0.6948 2.5015 12 1 5.7793 3.0993 2.3237 13 7 2.1480 1.9236 -1.3838 14 6 0.8282 1.9782 -2.0267 15 6 0.4317 0.7356 -2.8262 16 6 1.4053 0.5353 -3.9590 17 6 1.1741 1.1370 -5.1822 18 6 2.0679 0.9596 -6.2205 19 6 3.1924 0.1678 -6.0384 20 8 4.0706 -0.0124 -7.0598 21 6 3.7732 0.6431 -8.2943 22 6 3.4192 -0.4394 -4.8118 23 6 2.5250 -0.2545 -3.7752 24 6 0.3517 3.3357 -2.5474 25 6 -0.2840 2.7313 -1.2939 26 1 -0.3634 0.3778 0.9556 27 1 -0.3633 0.6387 -0.8051 28 1 -0.3633 -1.0166 -0.1506 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5351 1.4936 2.3524 32 1 2.6051 2.8225 -1.4194 33 1 0.4491 -0.1373 -2.1736 34 1 -0.5724 0.8678 -3.2292 35 1 0.2960 1.7495 -5.3249 36 1 1.8891 1.4333 -7.1744 37 1 4.5517 0.4163 -9.0228 38 1 2.8118 0.2924 -8.6694 39 1 3.7292 1.7200 -8.1325 40 1 4.2937 -1.0566 -4.6678 41 1 2.7014 -0.7267 -2.8199 42 1 1.0177 4.1882 -2.4134 43 1 -0.2442 3.3436 -3.4600 44 1 -1.2981 2.3417 -1.3817 45 1 -0.0363 3.1863 -0.3347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:48 Heat of formation + Delta-G solvation = -6.575866 kcal Electronic energy + Delta-G solvation = -23762.280564 eV Core-core repulsion = 20551.984025 eV Total energy + Delta-G solvation = -3210.296539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14207 -40.24637 -38.20586 -36.40690 -33.65310 -32.69583 -31.88554 -31.73632 -28.70242 -27.75770 -26.79457 -24.65163 -23.68816 -23.46322 -22.45789 -21.63147 -19.98133 -18.96253 -18.82872 -17.19332 -17.11732 -16.56806 -16.40788 -15.97451 -15.70338 -15.62957 -15.12933 -14.68018 -14.64257 -14.38553 -14.12227 -13.98169 -13.77915 -13.29701 -12.96144 -12.80264 -12.73115 -12.66065 -12.51046 -12.36088 -12.32738 -11.96470 -11.95080 -11.74780 -11.65337 -11.53073 -11.06693 -10.75134 -10.44543 -10.24310 -9.81451 -9.09060 -8.83367 -8.56120 -6.27847 0.53342 0.58902 1.52725 1.59506 1.79003 2.46552 2.56901 2.81729 2.96656 3.21136 3.52960 3.83422 3.94438 3.98806 4.03371 4.08160 4.29152 4.34294 4.43071 4.43390 4.51009 4.57694 4.58390 4.61385 4.72161 4.73456 4.81330 4.87585 4.93001 4.96914 5.01127 5.17050 5.18963 5.22120 5.27042 5.33823 5.41949 5.44881 5.53132 5.67348 5.90568 5.99124 6.07053 6.16939 6.55883 6.59472 6.69837 6.88795 7.53741 8.81909 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.004648 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.228996 B = 6022.940815 C = 6927.102458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.095 4.095 3 C 0.214 3.786 4 H -0.021 1.021 5 C -0.601 4.601 6 H 0.042 0.958 7 C -0.028 4.028 8 N -0.937 5.937 9 Si 1.111 2.889 10 H -0.286 1.286 11 H -0.276 1.276 12 H -0.273 1.273 13 N -0.642 5.642 14 C 0.059 3.941 15 C -0.036 4.036 16 C -0.097 4.097 17 C -0.079 4.079 18 C -0.208 4.208 19 C 0.106 3.894 20 O -0.341 6.341 21 C 0.020 3.980 22 C -0.171 4.171 23 C -0.066 4.066 24 C -0.167 4.167 25 C -0.212 4.212 26 H 0.025 0.975 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.017 0.983 31 H 0.259 0.741 32 H 0.327 0.673 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.112 0.888 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 0.095 -20.428 20.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.133 4.133 3 C 0.106 3.894 4 H -0.004 1.004 5 C -0.640 4.640 6 H 0.061 0.939 7 C -0.227 4.227 8 N -0.575 5.575 9 Si 0.934 3.066 10 H -0.212 1.212 11 H -0.202 1.202 12 H -0.199 1.199 13 N -0.271 5.271 14 C -0.033 4.033 15 C -0.074 4.074 16 C -0.098 4.098 17 C -0.097 4.097 18 C -0.226 4.226 19 C 0.061 3.939 20 O -0.256 6.256 21 C -0.074 4.074 22 C -0.189 4.189 23 C -0.084 4.084 24 C -0.204 4.204 25 C -0.251 4.251 26 H 0.044 0.956 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.134 0.866 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.140 0.860 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.141 0.859 44 H 0.130 0.870 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.647 -0.525 -19.232 19.582 hybrid contribution -1.001 0.776 -0.426 1.336 sum -4.648 0.251 -19.658 20.202 Atomic orbital electron populations 1.22330 0.96253 1.01756 1.01654 1.21514 0.94748 0.98333 0.98752 1.19071 0.94096 0.91733 0.84535 1.00387 1.22297 0.93465 1.53931 0.94287 0.93931 1.27045 1.06990 0.93198 0.95434 1.70901 0.99077 1.48716 1.38839 0.82995 0.71059 0.77497 0.75066 1.21194 1.20157 1.19888 1.60355 1.16614 1.31559 1.18535 1.21757 0.88803 0.93077 0.99707 1.20309 0.97039 0.96221 0.93783 1.19637 0.96671 0.98501 0.94966 1.21039 0.99321 0.97845 0.91506 1.21382 0.95798 1.03726 1.01693 1.19099 0.90194 0.96329 0.88264 1.86028 1.47644 1.70376 1.21519 1.23302 1.03666 0.97515 0.82966 1.20491 1.01898 1.04734 0.91820 1.20834 0.93361 0.97193 0.97035 1.23377 1.03271 0.95565 0.98187 1.23434 0.99529 1.06265 0.95857 0.95605 0.89022 0.92624 0.92622 0.96410 0.93050 0.85616 0.90494 0.88871 0.83737 0.83263 0.86555 0.91544 0.92023 0.86031 0.87148 0.89792 0.85940 0.87024 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.16 8.07 71.98 0.58 -5.58 16 2 C -0.09 -4.33 4.89 30.59 0.15 -4.18 16 3 C 0.21 10.46 1.72 44.17 0.08 10.54 16 4 H -0.02 -1.15 5.08 -2.39 -0.01 -1.17 16 5 C -0.60 -33.76 8.36 25.60 0.21 -33.55 16 6 H 0.04 2.44 7.82 -2.91 -0.02 2.42 16 7 C -0.03 -1.60 5.45 84.65 0.46 -1.14 16 8 N -0.94 -57.14 13.63 21.45 0.29 -56.84 16 9 Si 1.11 51.29 29.91 68.60 2.05 53.34 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 N -0.64 -26.41 6.27 -452.09 -2.83 -29.24 16 14 C 0.06 1.89 1.07 3.53 0.00 1.90 16 15 C -0.04 -1.01 4.11 29.85 0.12 -0.89 16 16 C -0.10 -2.77 5.00 -19.85 -0.10 -2.87 16 17 C -0.08 -1.86 9.70 22.25 0.22 -1.64 16 18 C -0.21 -4.73 9.04 22.37 0.20 -4.53 16 19 C 0.11 2.88 6.69 22.51 0.15 3.04 16 20 O -0.34 -8.47 10.50 -92.45 -0.97 -9.44 16 21 C 0.02 0.29 9.81 113.37 1.11 1.40 16 22 C -0.17 -5.24 9.99 22.36 0.22 -5.02 16 23 C -0.07 -2.13 9.69 22.25 0.22 -1.91 16 24 C -0.17 -4.44 9.93 30.59 0.30 -4.14 16 25 C -0.21 -6.53 7.53 30.59 0.23 -6.30 16 26 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 3.04 2.47 -2.39 -0.01 3.03 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 29 H 0.06 2.43 5.91 -2.39 -0.01 2.42 16 30 H 0.02 0.91 7.86 -2.39 -0.02 0.89 16 31 H 0.26 15.90 6.64 -92.71 -0.62 15.28 16 32 H 0.33 13.99 8.41 -89.69 -0.75 13.23 16 33 H 0.08 2.39 4.37 -2.39 -0.01 2.38 16 34 H 0.09 2.05 8.06 -2.39 -0.02 2.03 16 35 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.15 2.44 6.30 -2.91 -0.02 2.42 16 37 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 0.77 7.66 -2.39 -0.02 0.76 16 39 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 40 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 41 H 0.11 3.93 6.94 -2.91 -0.02 3.91 16 42 H 0.08 2.35 8.05 -2.38 -0.02 2.33 16 43 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.11 2.91 7.82 -2.39 -0.02 2.89 16 45 H 0.06 2.36 7.01 -2.39 -0.02 2.35 16 Total: -1.00 -66.72 349.40 3.10 -63.62 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 0.39 Total: 33.44 kcal Atomic # 6 Polarization: -59.03 SS G_CDS: 4.16 Total: -54.87 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.54 Total: -86.09 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.97 Total: -9.44 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.05 Total: 53.34 kcal Total: -66.72 3.10 -63.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.046 kcal (2) G-P(sol) polarization free energy of solvation -66.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds