Wall clock time and date at job start Tue Mar 31 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46819 * 2 1 4 4 H 1.08994 * 109.47418 * 52.42032 * 3 2 1 5 5 C 1.50699 * 109.46747 * 172.42228 * 3 2 1 6 6 H 1.07998 * 120.00440 * 119.99838 * 5 3 2 7 7 C 1.37879 * 119.99776 * 299.99588 * 5 3 2 8 8 N 1.31517 * 120.00272 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99970 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47028 * 90.00237 * 9 7 5 11 11 H 1.48501 * 109.47222 * 210.00310 * 9 7 5 12 12 H 1.48499 * 109.47317 * 330.00347 * 9 7 5 13 13 N 1.46898 * 109.47354 * 292.41556 * 3 2 1 14 14 C 1.46903 * 110.99804 * 122.25391 * 13 3 2 15 15 C 1.50697 * 112.84567 * 49.78925 * 14 13 3 16 16 C 1.38296 * 119.97313 * 209.06199 * 15 14 13 17 17 C 1.38240 * 120.11339 * 180.30161 * 16 15 14 18 18 C 1.38177 * 120.05508 * 359.68287 * 17 16 15 19 19 C 1.38709 * 119.93952 * 0.02562 * 18 17 16 20 20 O 1.35906 * 120.05061 * 180.02562 * 19 18 17 21 21 C 1.42896 * 117.00038 * 359.97438 * 20 19 18 22 22 C 1.38120 * 119.97388 * 28.76771 * 15 14 13 23 23 C 1.53780 * 113.61616 * 180.98413 * 14 13 3 24 24 C 1.53952 * 87.01941 * 89.23203 * 23 14 13 25 25 C 1.53779 * 113.61804 * 278.59404 * 14 13 3 26 26 H 1.08996 * 109.47491 * 53.22530 * 1 2 3 27 27 H 1.09003 * 109.46954 * 173.23186 * 1 2 3 28 28 H 1.09004 * 109.46444 * 293.22877 * 1 2 3 29 29 H 1.09001 * 109.46432 * 240.00249 * 2 1 3 30 30 H 1.08993 * 109.47495 * 120.00413 * 2 1 3 31 31 H 0.96995 * 119.99920 * 179.97438 * 8 7 5 32 32 H 1.00901 * 111.00088 * 358.30826 * 13 3 2 33 33 H 1.07997 * 119.94172 * 359.97438 * 16 15 14 34 34 H 1.07995 * 119.97686 * 179.70222 * 17 16 15 35 35 H 1.07998 * 120.02458 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47357 * 300.00011 * 21 20 19 37 37 H 1.09003 * 109.46978 * 59.99723 * 21 20 19 38 38 H 1.08998 * 109.47125 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.02923 * 359.97438 * 22 15 14 40 40 H 1.09001 * 113.61903 * 203.74944 * 23 14 13 41 41 H 1.09004 * 113.61183 * 334.65552 * 23 14 13 42 42 H 1.09003 * 113.53846 * 270.81337 * 24 23 14 43 43 H 1.08996 * 113.74684 * 139.94477 * 24 23 14 44 44 H 1.09007 * 113.61519 * 25.34609 * 25 14 13 45 45 H 1.08993 * 113.61922 * 156.24837 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5702 1.9940 0.8144 5 6 3.5353 1.4467 0.1874 6 1 4.1732 1.8797 -0.5689 7 6 4.0891 0.8976 1.3244 8 7 3.3124 0.3699 2.2453 9 14 5.9425 0.9033 1.5571 10 1 6.3494 2.1468 2.2595 11 1 6.3436 -0.2759 2.3657 12 1 6.6081 0.8436 0.2309 13 7 1.7053 2.0803 -1.2803 14 6 0.8922 3.2857 -1.0713 15 6 1.4793 4.2162 -0.0414 16 6 0.6490 5.0290 0.7086 17 6 1.1849 5.8881 1.6497 18 6 2.5517 5.9320 1.8478 19 6 3.3861 5.1134 1.1010 20 8 4.7307 5.1544 1.2944 21 6 5.2165 6.0646 2.2830 22 6 2.8457 4.2522 0.1568 23 6 0.4865 3.9893 -2.3771 24 6 -0.7607 3.0867 -2.3817 25 6 -0.6017 2.9914 -0.8551 26 1 -0.3634 0.6152 -0.8231 27 1 -0.3633 -1.0205 -0.1211 28 1 -0.3632 0.4053 0.9444 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.7021 -0.0167 3.0450 32 1 1.2384 1.4316 -1.8963 33 1 -0.4196 4.9962 0.5551 34 1 0.5348 6.5253 2.2308 35 1 2.9698 6.6031 2.5835 36 1 4.9282 7.0808 2.0143 37 1 4.7887 5.8100 3.2527 38 1 6.3031 5.9969 2.3365 39 1 3.4933 3.6135 -0.4255 40 1 0.2590 5.0478 -2.2505 41 1 1.1681 3.7981 -3.2060 42 1 -0.6095 2.1379 -2.8965 43 1 -1.6711 3.5977 -2.6948 44 1 -0.7974 1.9957 -0.4570 45 1 -1.1272 3.7764 -0.3115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:09 Heat of formation + Delta-G solvation = 22.269926 kcal Electronic energy + Delta-G solvation = -24813.382914 eV Core-core repulsion = 21604.337223 eV Total energy + Delta-G solvation = -3209.045691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17868 -38.86281 -36.33151 -35.10232 -31.81047 -31.06519 -29.63422 -29.48074 -26.83693 -26.47841 -25.27569 -24.01393 -22.84019 -21.61703 -20.87343 -19.70428 -18.46454 -17.04355 -16.30058 -15.71236 -15.46599 -15.20671 -15.01324 -14.66352 -14.51155 -13.95696 -13.35918 -13.14607 -12.97677 -12.77750 -12.36400 -12.26367 -12.05942 -11.72239 -11.67964 -11.53598 -11.19689 -11.13072 -10.78582 -10.65495 -10.53099 -10.47711 -10.28376 -10.00682 -9.89495 -9.65421 -9.53880 -9.44149 -9.07095 -8.23308 -8.00500 -7.51974 -7.18437 -5.88743 -3.89194 1.98435 2.16280 3.40774 3.46324 3.50941 3.84243 4.41985 4.52718 4.98957 5.04131 5.13046 5.20511 5.29046 5.41881 5.43834 5.47498 5.52094 5.62731 5.74131 5.75528 5.97388 6.02200 6.07779 6.13726 6.15149 6.20022 6.33120 6.33711 6.38846 6.49195 6.56472 6.70166 6.78669 6.89701 6.97245 7.05610 7.11206 7.19687 7.32255 7.46908 7.58371 7.81994 7.98278 8.10464 8.37884 8.55903 8.71741 9.13947 9.73263 11.16506 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.009403 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.527651 B = 2977.193449 C = 4730.713679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.141 4.141 3 C 0.219 3.781 4 H 0.028 0.972 5 C -0.480 4.480 6 H 0.063 0.937 7 C 0.059 3.941 8 N -0.895 5.895 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.292 1.292 12 H -0.275 1.275 13 N -0.660 5.660 14 C 0.147 3.853 15 C -0.025 4.025 16 C -0.159 4.159 17 C -0.101 4.101 18 C -0.217 4.217 19 C 0.117 3.883 20 O -0.311 6.311 21 C 0.031 3.969 22 C -0.088 4.088 23 C -0.127 4.127 24 C -0.141 4.141 25 C -0.194 4.194 26 H 0.047 0.953 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.036 0.964 30 H 0.101 0.899 31 H 0.257 0.743 32 H 0.327 0.673 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.162 0.838 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 9.062 -3.189 10.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.180 4.180 3 C 0.112 3.888 4 H 0.046 0.954 5 C -0.518 4.518 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.199 1.199 13 N -0.290 5.290 14 C 0.054 3.946 15 C -0.026 4.026 16 C -0.177 4.177 17 C -0.119 4.119 18 C -0.236 4.236 19 C 0.072 3.928 20 O -0.225 6.225 21 C -0.065 4.065 22 C -0.106 4.106 23 C -0.165 4.165 24 C -0.179 4.179 25 C -0.233 4.233 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.179 0.821 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.375 9.187 -3.144 10.650 hybrid contribution 0.027 -0.278 0.969 1.008 sum -4.348 8.910 -2.175 10.150 Atomic orbital electron populations 1.22161 0.99754 0.99342 1.00318 1.22078 0.91387 1.01533 1.03016 1.19230 0.95643 0.89085 0.84858 0.95436 1.21172 0.91271 1.35955 1.03413 0.91904 1.24874 0.97517 0.95650 0.96081 1.69867 1.34281 1.40119 1.09222 0.86653 0.86426 0.77249 0.78140 1.20530 1.21793 1.19949 1.60695 1.43839 1.07125 1.17325 1.20768 0.89423 0.91920 0.92449 1.19220 0.92524 0.95226 0.95588 1.20862 0.99208 0.99054 0.98624 1.20611 0.94042 0.99019 0.98259 1.21061 0.94665 1.04054 1.03839 1.19094 0.82023 0.95687 0.95954 1.86135 1.19942 1.59945 1.56451 1.22919 0.99996 0.92280 0.91282 1.20907 0.95400 0.96291 0.98013 1.23106 0.96914 0.98517 0.97980 1.22804 0.98072 1.00012 0.96970 1.24277 0.99191 1.03611 0.96237 0.93460 0.94706 0.93688 0.94541 0.88038 0.93313 0.85505 0.86639 0.86959 0.86705 0.93369 0.93150 0.89006 0.82091 0.90365 0.90886 0.90533 0.92079 0.89436 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 8.62 37.16 0.32 -2.71 16 2 C -0.14 -3.23 5.07 -26.73 -0.14 -3.37 16 3 C 0.22 5.19 1.25 -68.86 -0.09 5.11 16 4 H 0.03 0.75 6.51 -51.93 -0.34 0.41 16 5 C -0.48 -12.75 6.47 -34.44 -0.22 -12.97 16 6 H 0.06 1.72 6.84 -52.49 -0.36 1.36 16 7 C 0.06 1.62 5.28 -17.82 -0.09 1.53 16 8 N -0.89 -25.38 11.29 55.43 0.63 -24.76 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.66 -13.36 5.59 -94.59 -0.53 -13.89 16 14 C 0.15 2.63 0.94 -131.94 -0.12 2.51 16 15 C -0.02 -0.49 3.94 -104.65 -0.41 -0.90 16 16 C -0.16 -2.78 9.27 -39.56 -0.37 -3.14 16 17 C -0.10 -1.68 10.04 -39.60 -0.40 -2.07 16 18 C -0.22 -3.82 9.04 -39.43 -0.36 -4.18 16 19 C 0.12 2.39 6.69 -39.22 -0.26 2.13 16 20 O -0.31 -6.25 10.50 -19.44 -0.20 -6.46 16 21 C 0.03 0.45 9.81 101.05 0.99 1.44 16 22 C -0.09 -1.90 7.60 -39.43 -0.30 -2.20 16 23 C -0.13 -1.91 7.44 -25.83 -0.19 -2.10 16 24 C -0.14 -1.91 7.74 -25.83 -0.20 -2.11 16 25 C -0.19 -3.06 6.70 -25.92 -0.17 -3.23 16 26 H 0.05 0.81 4.43 -51.93 -0.23 0.58 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.04 0.81 8.11 -51.93 -0.42 0.39 16 30 H 0.10 2.66 5.90 -51.93 -0.31 2.35 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.33 6.17 6.37 -39.29 -0.25 5.91 16 33 H 0.12 1.76 5.79 -52.49 -0.30 1.46 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.12 1.71 6.30 -52.49 -0.33 1.38 16 36 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 37 H 0.05 0.71 7.66 -51.93 -0.40 0.31 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.16 3.87 4.97 -52.48 -0.26 3.61 16 40 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.01 7.71 -51.93 -0.40 0.61 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 1.47 4.02 -51.92 -0.21 1.26 16 45 H 0.08 1.18 5.70 -51.93 -0.30 0.88 16 LS Contribution 337.21 15.07 5.08 5.08 Total: -1.00 -28.87 337.21 -8.65 -37.52 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.59 Total: 11.90 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -2.01 Total: -26.27 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.10 Total: -38.65 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.20 Total: -6.46 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.87 -8.65 -37.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.789 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds