Wall clock time and date at job start Tue Mar 31 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46819 * 2 1 4 4 H 1.08994 * 109.47418 * 52.42032 * 3 2 1 5 5 C 1.50699 * 109.46747 * 172.42228 * 3 2 1 6 6 H 1.07998 * 120.00440 * 119.99838 * 5 3 2 7 7 C 1.37879 * 119.99776 * 299.99588 * 5 3 2 8 8 N 1.31517 * 120.00272 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99970 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47028 * 90.00237 * 9 7 5 11 11 H 1.48501 * 109.47222 * 210.00310 * 9 7 5 12 12 H 1.48499 * 109.47317 * 330.00347 * 9 7 5 13 13 N 1.46898 * 109.47354 * 292.41556 * 3 2 1 14 14 C 1.46903 * 110.99804 * 122.25391 * 13 3 2 15 15 C 1.50697 * 112.84567 * 49.78925 * 14 13 3 16 16 C 1.38296 * 119.97313 * 209.06199 * 15 14 13 17 17 C 1.38240 * 120.11339 * 180.30161 * 16 15 14 18 18 C 1.38177 * 120.05508 * 359.68287 * 17 16 15 19 19 C 1.38709 * 119.93952 * 0.02562 * 18 17 16 20 20 O 1.35906 * 120.05061 * 180.02562 * 19 18 17 21 21 C 1.42896 * 117.00038 * 359.97438 * 20 19 18 22 22 C 1.38120 * 119.97388 * 28.76771 * 15 14 13 23 23 C 1.53780 * 113.61616 * 180.98413 * 14 13 3 24 24 C 1.53952 * 87.01941 * 89.23203 * 23 14 13 25 25 C 1.53779 * 113.61804 * 278.59404 * 14 13 3 26 26 H 1.08996 * 109.47491 * 53.22530 * 1 2 3 27 27 H 1.09003 * 109.46954 * 173.23186 * 1 2 3 28 28 H 1.09004 * 109.46444 * 293.22877 * 1 2 3 29 29 H 1.09001 * 109.46432 * 240.00249 * 2 1 3 30 30 H 1.08993 * 109.47495 * 120.00413 * 2 1 3 31 31 H 0.96995 * 119.99920 * 179.97438 * 8 7 5 32 32 H 1.00901 * 111.00088 * 358.30826 * 13 3 2 33 33 H 1.07997 * 119.94172 * 359.97438 * 16 15 14 34 34 H 1.07995 * 119.97686 * 179.70222 * 17 16 15 35 35 H 1.07998 * 120.02458 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47357 * 300.00011 * 21 20 19 37 37 H 1.09003 * 109.46978 * 59.99723 * 21 20 19 38 38 H 1.08998 * 109.47125 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.02923 * 359.97438 * 22 15 14 40 40 H 1.09001 * 113.61903 * 203.74944 * 23 14 13 41 41 H 1.09004 * 113.61183 * 334.65552 * 23 14 13 42 42 H 1.09003 * 113.53846 * 270.81337 * 24 23 14 43 43 H 1.08996 * 113.74684 * 139.94477 * 24 23 14 44 44 H 1.09007 * 113.61519 * 25.34609 * 25 14 13 45 45 H 1.08993 * 113.61922 * 156.24837 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5702 1.9940 0.8144 5 6 3.5353 1.4467 0.1874 6 1 4.1732 1.8797 -0.5689 7 6 4.0891 0.8976 1.3244 8 7 3.3124 0.3699 2.2453 9 14 5.9425 0.9033 1.5571 10 1 6.3494 2.1468 2.2595 11 1 6.3436 -0.2759 2.3657 12 1 6.6081 0.8436 0.2309 13 7 1.7053 2.0803 -1.2803 14 6 0.8922 3.2857 -1.0713 15 6 1.4793 4.2162 -0.0414 16 6 0.6490 5.0290 0.7086 17 6 1.1849 5.8881 1.6497 18 6 2.5517 5.9320 1.8478 19 6 3.3861 5.1134 1.1010 20 8 4.7307 5.1544 1.2944 21 6 5.2165 6.0646 2.2830 22 6 2.8457 4.2522 0.1568 23 6 0.4865 3.9893 -2.3771 24 6 -0.7607 3.0867 -2.3817 25 6 -0.6017 2.9914 -0.8551 26 1 -0.3634 0.6152 -0.8231 27 1 -0.3633 -1.0205 -0.1211 28 1 -0.3632 0.4053 0.9444 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.7021 -0.0167 3.0450 32 1 1.2384 1.4316 -1.8963 33 1 -0.4196 4.9962 0.5551 34 1 0.5348 6.5253 2.2308 35 1 2.9698 6.6031 2.5835 36 1 4.9282 7.0808 2.0143 37 1 4.7887 5.8100 3.2527 38 1 6.3031 5.9969 2.3365 39 1 3.4933 3.6135 -0.4255 40 1 0.2590 5.0478 -2.2505 41 1 1.1681 3.7981 -3.2060 42 1 -0.6095 2.1379 -2.8965 43 1 -1.6711 3.5977 -2.6948 44 1 -0.7974 1.9957 -0.4570 45 1 -1.1272 3.7764 -0.3115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:09 Heat of formation + Delta-G solvation = 5.468544 kcal Electronic energy + Delta-G solvation = -24814.111477 eV Core-core repulsion = 21604.337223 eV Total energy + Delta-G solvation = -3209.774254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.56801 -40.24811 -37.72465 -36.83142 -33.80864 -32.53331 -31.08824 -30.92817 -28.38394 -28.06650 -26.51524 -25.43407 -24.60830 -23.05930 -22.19020 -21.49292 -19.81348 -18.53804 -18.24213 -17.13126 -16.86565 -16.58028 -16.53269 -16.26264 -16.04577 -15.38329 -15.02966 -14.82585 -14.45738 -14.16523 -13.87284 -13.67983 -13.50739 -13.20661 -13.08744 -12.97806 -12.87085 -12.68993 -12.53687 -12.41484 -11.99904 -11.83417 -11.78089 -11.65064 -11.52962 -11.28015 -11.11807 -10.91822 -10.85427 -10.32630 -9.45137 -8.96157 -8.81587 -7.98996 -6.03666 0.57722 0.73418 1.37524 1.41358 1.48447 2.47653 2.54106 2.99721 3.29254 3.56278 3.78968 3.92227 3.97059 4.07413 4.22706 4.28816 4.36264 4.36511 4.40702 4.51111 4.57419 4.64899 4.69752 4.73348 4.84374 4.89342 4.93551 4.97052 5.05571 5.17594 5.22651 5.27901 5.36787 5.41957 5.44780 5.49490 5.60266 5.63722 5.69618 5.79522 5.92546 5.99970 6.08903 6.45068 6.69251 6.76595 7.03940 7.05628 7.61506 9.03677 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.009403 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.527651 B = 2977.193449 C = 4730.713679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.238 3.762 4 H -0.005 1.005 5 C -0.477 4.477 6 H 0.045 0.955 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.932 3.068 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.666 5.666 14 C 0.128 3.872 15 C -0.035 4.035 16 C -0.165 4.165 17 C -0.094 4.094 18 C -0.220 4.220 19 C 0.096 3.904 20 O -0.347 6.347 21 C 0.022 3.978 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.190 4.190 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.254 0.746 32 H 0.334 0.666 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.143 0.857 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 10.621 -3.529 13.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.130 3.870 4 H 0.013 0.987 5 C -0.516 4.516 6 H 0.063 0.937 7 C -0.181 4.181 8 N -0.560 5.560 9 Si 0.760 3.240 10 H -0.210 1.210 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.296 5.296 14 C 0.036 3.964 15 C -0.036 4.036 16 C -0.183 4.183 17 C -0.112 4.112 18 C -0.239 4.239 19 C 0.051 3.949 20 O -0.261 6.261 21 C -0.073 4.073 22 C -0.144 4.144 23 C -0.158 4.158 24 C -0.161 4.161 25 C -0.229 4.229 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.161 0.839 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.142 0.858 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.422 10.755 -3.501 13.006 hybrid contribution 0.697 -0.658 1.067 1.434 sum -5.725 10.097 -2.434 11.860 Atomic orbital electron populations 1.22014 0.96510 1.01047 1.00656 1.21926 0.94321 1.00386 1.01202 1.18798 0.93513 0.89317 0.85403 0.98737 1.21375 0.93022 1.34517 1.02645 0.93695 1.25408 1.00379 0.96036 0.96269 1.69982 1.35184 1.41326 1.09516 0.85945 0.83233 0.76961 0.77910 1.20955 1.21262 1.19842 1.60497 1.45617 1.07828 1.15682 1.21022 0.90358 0.90912 0.94133 1.19531 0.91975 0.95821 0.96257 1.21195 1.00289 0.98603 0.98251 1.21120 0.94099 0.98453 0.97529 1.21390 0.95050 1.03718 1.03732 1.19338 0.82634 0.96427 0.96481 1.86073 1.20190 1.61719 1.58141 1.23234 1.01019 0.92729 0.90305 1.20762 0.96266 0.97797 0.99556 1.23088 0.97457 0.99349 0.95889 1.22751 0.98344 1.00033 0.95005 1.24240 0.97075 1.03393 0.98219 0.91241 0.92733 0.94755 0.94591 0.91516 0.93668 0.84687 0.84021 0.83028 0.83947 0.90787 0.92849 0.87299 0.85768 0.89100 0.91382 0.90136 0.89285 0.90542 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 8.62 71.98 0.62 -4.78 16 2 C -0.14 -6.48 5.07 30.60 0.16 -6.33 16 3 C 0.24 11.62 1.25 44.17 0.06 11.68 16 4 H -0.01 -0.29 6.51 -2.39 -0.02 -0.30 16 5 C -0.48 -26.50 6.47 25.60 0.17 -26.33 16 6 H 0.04 2.61 6.84 -2.91 -0.02 2.59 16 7 C 0.02 0.94 5.28 84.65 0.45 1.38 16 8 N -0.92 -53.99 11.29 21.45 0.24 -53.75 16 9 Si 0.93 46.54 29.54 68.60 2.03 48.57 16 10 H -0.28 -14.21 7.11 99.48 0.71 -13.50 16 11 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.27 -13.45 7.11 99.48 0.71 -12.75 16 13 N -0.67 -27.28 5.59 -453.19 -2.53 -29.81 16 14 C 0.13 4.47 0.94 3.30 0.00 4.47 16 15 C -0.04 -1.37 3.94 -19.88 -0.08 -1.45 16 16 C -0.17 -5.42 9.27 22.28 0.21 -5.21 16 17 C -0.09 -2.86 10.04 22.26 0.22 -2.64 16 18 C -0.22 -7.43 9.04 22.37 0.20 -7.22 16 19 C 0.10 3.98 6.69 22.51 0.15 4.13 16 20 O -0.35 -14.31 10.50 -92.49 -0.97 -15.28 16 21 C 0.02 0.61 9.81 113.37 1.11 1.72 16 22 C -0.13 -5.64 7.60 22.37 0.17 -5.47 16 23 C -0.12 -3.34 7.44 31.18 0.23 -3.11 16 24 C -0.12 -2.92 7.74 31.18 0.24 -2.68 16 25 C -0.19 -5.50 6.70 31.12 0.21 -5.29 16 26 H 0.07 2.26 4.43 -2.39 -0.01 2.25 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.03 1.33 8.07 -2.38 -0.02 1.31 16 29 H 0.04 1.63 8.11 -2.39 -0.02 1.61 16 30 H 0.07 3.61 5.90 -2.39 -0.01 3.59 16 31 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.33 12.45 6.37 -89.69 -0.57 11.88 16 33 H 0.14 3.81 5.79 -2.91 -0.02 3.79 16 34 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 35 H 0.14 3.87 6.30 -2.91 -0.02 3.85 16 36 H 0.07 1.67 7.66 -2.39 -0.02 1.65 16 37 H 0.05 1.45 7.66 -2.39 -0.02 1.43 16 38 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.12 6.41 4.97 -2.91 -0.01 6.39 16 40 H 0.09 2.30 8.09 -2.39 -0.02 2.29 16 41 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.08 1.85 7.71 -2.39 -0.02 1.83 16 43 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 2.39 4.02 -2.38 -0.01 2.38 16 45 H 0.09 2.43 5.70 -2.39 -0.01 2.42 16 Total: -1.00 -66.25 337.21 3.31 -62.94 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.43 Total: 34.45 kcal Atomic # 6 Polarization: -51.24 SS G_CDS: 4.12 Total: -47.12 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -2.29 Total: -83.56 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.97 Total: -15.28 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -66.25 3.31 -62.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.411 kcal (2) G-P(sol) polarization free energy of solvation -66.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds