Wall clock time and date at job start Tue Mar 31 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47172 * 2 1 4 4 H 1.08999 * 109.47182 * 29.29903 * 3 2 1 5 5 C 1.50698 * 109.46894 * 269.30175 * 3 2 1 6 6 H 1.08002 * 120.00175 * 239.99516 * 5 3 2 7 7 C 1.37883 * 120.00110 * 60.00340 * 5 3 2 8 8 N 1.31504 * 119.99877 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99821 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47372 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47482 * 119.99844 * 9 7 5 12 12 H 1.48508 * 109.46936 * 239.99747 * 9 7 5 13 13 N 1.46896 * 109.47343 * 149.30127 * 3 2 1 14 14 C 1.46901 * 111.00156 * 243.84621 * 13 3 2 15 15 C 1.50701 * 112.84726 * 293.87698 * 14 13 3 16 16 C 1.38281 * 119.97275 * 216.86948 * 15 14 13 17 17 C 1.38247 * 120.11416 * 180.02562 * 16 15 14 18 18 C 1.38169 * 120.04961 * 0.02562 * 17 16 15 19 19 C 1.38709 * 119.94889 * 359.67877 * 18 17 16 20 20 O 1.35900 * 120.05830 * 180.29962 * 19 18 17 21 21 C 1.42896 * 116.99911 * 0.29718 * 20 19 18 22 22 C 1.38124 * 119.97009 * 36.88834 * 15 14 13 23 23 C 1.53777 * 113.69182 * 65.14659 * 14 13 3 24 24 C 1.53778 * 87.08228 * 89.13035 * 23 14 13 25 25 C 1.53780 * 113.61538 * 162.68460 * 14 13 3 26 26 H 1.09001 * 109.47261 * 226.23233 * 1 2 3 27 27 H 1.09006 * 109.47064 * 346.23242 * 1 2 3 28 28 H 1.09004 * 109.46990 * 106.23232 * 1 2 3 29 29 H 1.08999 * 109.46913 * 239.99791 * 2 1 3 30 30 H 1.08994 * 109.46871 * 119.99698 * 2 1 3 31 31 H 0.97002 * 120.00027 * 180.02562 * 8 7 5 32 32 H 1.00899 * 110.99730 * 7.79726 * 13 3 2 33 33 H 1.08000 * 119.94685 * 0.04492 * 16 15 14 34 34 H 1.07994 * 119.97460 * 179.97438 * 17 16 15 35 35 H 1.08004 * 120.02100 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47377 * 60.00149 * 21 20 19 37 37 H 1.09002 * 109.47020 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.47369 * 299.99749 * 21 20 19 39 39 H 1.08002 * 120.03080 * 359.97438 * 22 15 14 40 40 H 1.09002 * 113.61536 * 203.67721 * 23 14 13 41 41 H 1.08996 * 113.61609 * 334.57600 * 23 14 13 42 42 H 1.09006 * 113.60842 * 270.88377 * 24 23 14 43 43 H 1.09002 * 113.61710 * 139.98283 * 24 23 14 44 44 H 1.09001 * 113.61256 * 25.34231 * 25 14 13 45 45 H 1.08997 * 113.61227 * 156.25170 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3162 2.0838 0.5029 5 6 2.2238 1.9103 -1.4207 6 1 3.1984 2.2243 -1.7641 7 6 1.1476 1.9375 -2.2822 8 7 -0.0391 1.5548 -1.8643 9 14 1.3756 2.5167 -4.0435 10 1 2.7964 2.8894 -4.2621 11 1 1.0010 1.4238 -4.9764 12 1 0.5105 3.6979 -4.2920 13 7 3.3260 1.5073 0.7070 14 6 3.2210 2.3350 1.9161 15 6 2.9562 3.7867 1.6101 16 6 3.5390 4.7733 2.3842 17 6 3.2977 6.1059 2.1064 18 6 2.4727 6.4551 1.0545 19 6 1.8918 5.4674 0.2727 20 8 1.0849 5.8084 -0.7663 21 6 0.8835 7.2036 -1.0005 22 6 2.1313 4.1306 0.5570 23 6 2.2840 1.7501 2.9860 24 6 3.5097 1.0041 3.5390 25 6 4.3697 2.1156 2.9146 26 1 -0.3634 -0.7109 0.7421 27 1 -0.3633 0.9982 0.2446 28 1 -0.3633 -0.2873 -0.9867 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 -0.7961 1.5736 -2.4705 32 1 3.6630 0.5827 0.9300 33 1 4.1840 4.5024 3.2069 34 1 3.7536 6.8746 2.7127 35 1 2.2842 7.4963 0.8382 36 1 1.8423 7.6797 -1.2058 37 1 0.2217 7.3365 -1.8563 38 1 0.4333 7.6589 -0.1184 39 1 1.6765 3.3597 -0.0474 40 1 1.8823 2.4974 3.6703 41 1 1.5171 1.0899 2.5810 42 1 3.6658 0.0249 3.0862 43 1 3.5513 0.9795 4.6280 44 1 5.2866 1.7503 2.4519 45 1 4.5382 2.9627 3.5794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:11 Heat of formation + Delta-G solvation = 42.079556 kcal Electronic energy + Delta-G solvation = -24767.652117 eV Core-core repulsion = 21559.465435 eV Total energy + Delta-G solvation = -3208.186681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.23110 -38.85524 -36.34895 -35.36442 -31.77932 -30.77120 -29.63342 -29.56147 -26.86158 -26.50922 -25.31661 -24.06441 -22.24639 -21.69565 -20.92336 -20.18664 -18.43081 -16.93843 -16.35626 -15.62762 -15.35617 -15.21306 -15.17747 -14.74713 -14.55916 -13.75285 -13.39588 -13.10730 -12.97612 -12.70209 -12.51170 -12.18840 -11.95988 -11.80701 -11.59740 -11.17291 -11.00051 -10.89976 -10.73210 -10.72517 -10.58271 -10.47995 -10.25675 -10.13153 -9.93102 -9.82628 -9.37986 -9.09791 -8.74859 -8.29989 -8.10067 -7.55779 -7.17806 -5.81342 -3.94613 1.94186 2.11087 3.37537 3.45767 3.51411 3.85229 4.35687 4.51328 4.99068 5.05749 5.06878 5.18987 5.25655 5.36780 5.37096 5.43300 5.46790 5.57773 5.65890 5.74406 5.95246 5.99765 6.11466 6.17393 6.25005 6.32788 6.36630 6.46270 6.47941 6.63522 6.67835 6.76804 6.86910 6.95432 7.08900 7.16873 7.25484 7.35248 7.48314 7.61143 7.74273 7.93662 8.13789 8.15319 8.24421 8.52618 8.61974 9.12345 9.68549 11.09082 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.009355 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.064975 B = 2992.278562 C = 4866.464629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.117 4.117 3 C 0.201 3.799 4 H 0.043 0.957 5 C -0.491 4.491 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.879 5.879 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.285 1.285 13 N -0.659 5.659 14 C 0.144 3.856 15 C -0.021 4.021 16 C -0.162 4.162 17 C -0.101 4.101 18 C -0.223 4.223 19 C 0.120 3.880 20 O -0.305 6.305 21 C 0.029 3.971 22 C -0.141 4.141 23 C -0.168 4.168 24 C -0.142 4.142 25 C -0.137 4.137 26 H -0.014 1.014 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.012 0.988 31 H 0.256 0.744 32 H 0.327 0.673 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.203 0.797 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.562 5.619 8.524 10.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.156 4.156 3 C 0.095 3.905 4 H 0.060 0.940 5 C -0.529 4.529 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.518 5.518 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.211 1.211 13 N -0.289 5.289 14 C 0.051 3.949 15 C -0.022 4.022 16 C -0.181 4.181 17 C -0.119 4.119 18 C -0.242 4.242 19 C 0.075 3.925 20 O -0.218 6.218 21 C -0.066 4.066 22 C -0.158 4.158 23 C -0.208 4.208 24 C -0.179 4.179 25 C -0.174 4.174 26 H 0.005 0.995 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.220 0.780 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.530 5.992 7.892 10.519 hybrid contribution -0.372 0.146 -0.394 0.561 sum 3.158 6.138 7.498 10.191 Atomic orbital electron populations 1.21717 0.94912 0.99738 0.99219 1.22094 0.97414 0.98737 0.97391 1.19862 0.84534 0.92242 0.93873 0.93962 1.21193 0.95358 1.41748 0.94621 0.91828 1.24963 0.95560 0.95324 0.98299 1.70348 0.99712 1.47089 1.34687 0.86564 0.78227 0.78201 0.85219 1.19927 1.21523 1.21100 1.60671 1.32375 1.16360 1.19445 1.20748 0.94570 0.90510 0.89070 1.19298 0.95038 0.93865 0.93958 1.20906 1.03041 0.92451 1.01670 1.20636 0.98309 0.95836 0.97108 1.21124 1.04640 0.98204 1.00214 1.19196 0.91521 0.94115 0.87698 1.86231 1.63701 1.24753 1.47151 1.22941 1.00997 0.81341 1.01358 1.22338 0.99504 0.95654 0.98294 1.23713 0.97492 1.00131 0.99436 1.22795 0.97315 0.98011 0.99798 1.23223 0.97737 0.98590 0.97897 0.99508 0.91845 0.91643 0.93216 0.96918 0.93345 0.85464 0.86465 0.86924 0.86697 0.93305 0.88894 0.93362 0.78042 0.90541 0.90784 0.90450 0.91879 0.90965 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.26 8.28 37.16 0.31 -1.95 16 2 C -0.12 -2.66 5.01 -26.73 -0.13 -2.79 16 3 C 0.20 4.71 0.79 -68.87 -0.05 4.66 16 4 H 0.04 1.08 4.08 -51.93 -0.21 0.87 16 5 C -0.49 -12.95 6.65 -34.44 -0.23 -13.18 16 6 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 8 N -0.88 -23.47 8.28 55.43 0.46 -23.01 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.66 -13.60 6.26 -94.59 -0.59 -14.19 16 14 C 0.14 2.60 0.98 -131.94 -0.13 2.47 16 15 C -0.02 -0.41 5.22 -104.65 -0.55 -0.95 16 16 C -0.16 -2.71 9.27 -39.56 -0.37 -3.08 16 17 C -0.10 -1.59 10.04 -39.60 -0.40 -1.99 16 18 C -0.22 -3.80 9.04 -39.43 -0.36 -4.16 16 19 C 0.12 2.45 6.69 -39.22 -0.26 2.19 16 20 O -0.31 -6.28 10.50 -19.43 -0.20 -6.49 16 21 C 0.03 0.42 9.81 101.05 0.99 1.41 16 22 C -0.14 -3.14 8.38 -39.43 -0.33 -3.47 16 23 C -0.17 -2.78 6.96 -25.92 -0.18 -2.96 16 24 C -0.14 -1.96 7.75 -25.92 -0.20 -2.16 16 25 C -0.14 -2.00 7.00 -25.92 -0.18 -2.18 16 26 H -0.01 -0.29 8.14 -51.93 -0.42 -0.72 16 27 H 0.06 1.58 6.26 -51.93 -0.32 1.25 16 28 H 0.06 1.60 6.67 -51.93 -0.35 1.26 16 29 H 0.05 1.20 7.82 -51.93 -0.41 0.80 16 30 H 0.01 0.25 7.48 -51.93 -0.39 -0.14 16 31 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.33 6.26 6.97 -39.29 -0.27 5.99 16 33 H 0.12 1.66 5.65 -52.49 -0.30 1.36 16 34 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 35 H 0.12 1.63 6.30 -52.48 -0.33 1.30 16 36 H 0.05 0.63 7.68 -51.93 -0.40 0.23 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 39 H 0.20 5.13 2.60 -52.49 -0.14 4.99 16 40 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 41 H 0.07 1.35 7.05 -51.93 -0.37 0.99 16 42 H 0.08 1.06 7.74 -51.93 -0.40 0.65 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.13 5.66 -51.93 -0.29 0.83 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -27.99 337.49 -9.09 -37.08 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -6.65 Total: 11.58 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -2.16 Total: -26.64 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.13 Total: -37.20 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.20 Total: -6.49 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.99 -9.09 -37.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.162 kcal (2) G-P(sol) polarization free energy of solvation -27.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds