Wall clock time and date at job start Tue Mar 31 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47172 * 2 1 4 4 H 1.08999 * 109.47182 * 29.29903 * 3 2 1 5 5 C 1.50698 * 109.46894 * 269.30175 * 3 2 1 6 6 H 1.08002 * 120.00175 * 239.99516 * 5 3 2 7 7 C 1.37883 * 120.00110 * 60.00340 * 5 3 2 8 8 N 1.31504 * 119.99877 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99821 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47372 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47482 * 119.99844 * 9 7 5 12 12 H 1.48508 * 109.46936 * 239.99747 * 9 7 5 13 13 N 1.46896 * 109.47343 * 149.30127 * 3 2 1 14 14 C 1.46901 * 111.00156 * 243.84621 * 13 3 2 15 15 C 1.50701 * 112.84726 * 293.87698 * 14 13 3 16 16 C 1.38281 * 119.97275 * 216.86948 * 15 14 13 17 17 C 1.38247 * 120.11416 * 180.02562 * 16 15 14 18 18 C 1.38169 * 120.04961 * 0.02562 * 17 16 15 19 19 C 1.38709 * 119.94889 * 359.67877 * 18 17 16 20 20 O 1.35900 * 120.05830 * 180.29962 * 19 18 17 21 21 C 1.42896 * 116.99911 * 0.29718 * 20 19 18 22 22 C 1.38124 * 119.97009 * 36.88834 * 15 14 13 23 23 C 1.53777 * 113.69182 * 65.14659 * 14 13 3 24 24 C 1.53778 * 87.08228 * 89.13035 * 23 14 13 25 25 C 1.53780 * 113.61538 * 162.68460 * 14 13 3 26 26 H 1.09001 * 109.47261 * 226.23233 * 1 2 3 27 27 H 1.09006 * 109.47064 * 346.23242 * 1 2 3 28 28 H 1.09004 * 109.46990 * 106.23232 * 1 2 3 29 29 H 1.08999 * 109.46913 * 239.99791 * 2 1 3 30 30 H 1.08994 * 109.46871 * 119.99698 * 2 1 3 31 31 H 0.97002 * 120.00027 * 180.02562 * 8 7 5 32 32 H 1.00899 * 110.99730 * 7.79726 * 13 3 2 33 33 H 1.08000 * 119.94685 * 0.04492 * 16 15 14 34 34 H 1.07994 * 119.97460 * 179.97438 * 17 16 15 35 35 H 1.08004 * 120.02100 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47377 * 60.00149 * 21 20 19 37 37 H 1.09002 * 109.47020 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.47369 * 299.99749 * 21 20 19 39 39 H 1.08002 * 120.03080 * 359.97438 * 22 15 14 40 40 H 1.09002 * 113.61536 * 203.67721 * 23 14 13 41 41 H 1.08996 * 113.61609 * 334.57600 * 23 14 13 42 42 H 1.09006 * 113.60842 * 270.88377 * 24 23 14 43 43 H 1.09002 * 113.61710 * 139.98283 * 24 23 14 44 44 H 1.09001 * 113.61256 * 25.34231 * 25 14 13 45 45 H 1.08997 * 113.61227 * 156.25170 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3162 2.0838 0.5029 5 6 2.2238 1.9103 -1.4207 6 1 3.1984 2.2243 -1.7641 7 6 1.1476 1.9375 -2.2822 8 7 -0.0391 1.5548 -1.8643 9 14 1.3756 2.5167 -4.0435 10 1 2.7964 2.8894 -4.2621 11 1 1.0010 1.4238 -4.9764 12 1 0.5105 3.6979 -4.2920 13 7 3.3260 1.5073 0.7070 14 6 3.2210 2.3350 1.9161 15 6 2.9562 3.7867 1.6101 16 6 3.5390 4.7733 2.3842 17 6 3.2977 6.1059 2.1064 18 6 2.4727 6.4551 1.0545 19 6 1.8918 5.4674 0.2727 20 8 1.0849 5.8084 -0.7663 21 6 0.8835 7.2036 -1.0005 22 6 2.1313 4.1306 0.5570 23 6 2.2840 1.7501 2.9860 24 6 3.5097 1.0041 3.5390 25 6 4.3697 2.1156 2.9146 26 1 -0.3634 -0.7109 0.7421 27 1 -0.3633 0.9982 0.2446 28 1 -0.3633 -0.2873 -0.9867 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 -0.7961 1.5736 -2.4705 32 1 3.6630 0.5827 0.9300 33 1 4.1840 4.5024 3.2069 34 1 3.7536 6.8746 2.7127 35 1 2.2842 7.4963 0.8382 36 1 1.8423 7.6797 -1.2058 37 1 0.2217 7.3365 -1.8563 38 1 0.4333 7.6589 -0.1184 39 1 1.6765 3.3597 -0.0474 40 1 1.8823 2.4974 3.6703 41 1 1.5171 1.0899 2.5810 42 1 3.6658 0.0249 3.0862 43 1 3.5513 0.9795 4.6280 44 1 5.2866 1.7503 2.4519 45 1 4.5382 2.9627 3.5794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:11 Heat of formation + Delta-G solvation = 25.936777 kcal Electronic energy + Delta-G solvation = -24768.352120 eV Core-core repulsion = 21559.465435 eV Total energy + Delta-G solvation = -3208.886685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60697 -40.22768 -37.72294 -37.11172 -33.63626 -32.34131 -31.20298 -30.95663 -28.39175 -28.07666 -26.56682 -25.50189 -24.00362 -23.19327 -22.19841 -21.98901 -19.76970 -18.33449 -18.29007 -17.09736 -16.73140 -16.63905 -16.52984 -16.36120 -16.07881 -15.23880 -15.09344 -14.77052 -14.42552 -14.18843 -13.97497 -13.57431 -13.44370 -13.25531 -13.01777 -12.80266 -12.69257 -12.61375 -12.40959 -12.33067 -12.09371 -11.86275 -11.83317 -11.77426 -11.55077 -11.34668 -10.95166 -10.75715 -10.60572 -10.30516 -9.54406 -8.96236 -8.80554 -7.86240 -6.03125 0.57397 0.72943 1.37623 1.41922 1.50782 2.48470 2.57671 2.97552 3.28694 3.64296 3.76359 3.87996 3.90773 4.04987 4.13681 4.27636 4.36828 4.37197 4.41171 4.57391 4.65682 4.67854 4.71626 4.83895 4.89470 4.92039 4.95975 5.00271 5.12446 5.17628 5.22227 5.22483 5.43181 5.45288 5.52776 5.59445 5.64689 5.74488 5.78569 5.89909 6.00017 6.12683 6.17724 6.37777 6.73977 6.74929 6.97904 7.04833 7.60908 9.01376 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.009355 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.064975 B = 2992.278562 C = 4866.464629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.111 4.111 3 C 0.219 3.781 4 H 0.022 0.978 5 C -0.493 4.493 6 H 0.038 0.962 7 C 0.023 3.977 8 N -0.891 5.891 9 Si 0.932 3.068 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.287 1.287 13 N -0.669 5.669 14 C 0.125 3.875 15 C -0.034 4.034 16 C -0.162 4.162 17 C -0.090 4.090 18 C -0.221 4.221 19 C 0.096 3.904 20 O -0.348 6.348 21 C 0.021 3.979 22 C -0.189 4.189 23 C -0.169 4.169 24 C -0.126 4.126 25 C -0.123 4.123 26 H 0.011 0.989 27 H 0.038 0.962 28 H 0.047 0.953 29 H 0.029 0.971 30 H 0.037 0.963 31 H 0.254 0.746 32 H 0.334 0.666 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.164 0.836 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 6.834 10.968 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.150 4.150 3 C 0.111 3.889 4 H 0.039 0.961 5 C -0.532 4.532 6 H 0.056 0.944 7 C -0.176 4.176 8 N -0.531 5.531 9 Si 0.761 3.239 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.214 1.214 13 N -0.299 5.299 14 C 0.033 3.967 15 C -0.034 4.034 16 C -0.180 4.180 17 C -0.108 4.108 18 C -0.239 4.239 19 C 0.052 3.948 20 O -0.263 6.263 21 C -0.074 4.074 22 C -0.207 4.207 23 C -0.208 4.208 24 C -0.163 4.163 25 C -0.160 4.160 26 H 0.029 0.971 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.152 0.848 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.162 0.838 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.181 0.819 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.168 7.204 10.341 13.621 hybrid contribution -0.882 -0.129 -1.134 1.442 sum 4.286 7.075 9.207 12.377 Atomic orbital electron populations 1.21493 0.95168 0.98802 0.98787 1.21984 0.97084 0.98489 0.97467 1.19466 0.85420 0.91672 0.92316 0.96070 1.21249 0.94027 1.41502 0.96400 0.94393 1.25429 0.95670 0.95854 1.00663 1.70460 0.99776 1.47799 1.35053 0.85898 0.77479 0.77804 0.82752 1.20591 1.20807 1.21355 1.60499 1.30875 1.17078 1.21464 1.21008 0.97426 0.89549 0.88751 1.19587 0.94769 0.95334 0.93752 1.21268 1.02623 0.92304 1.01803 1.21181 0.96711 0.96581 0.96320 1.21445 1.03950 0.98832 0.99718 1.19417 0.92435 0.94442 0.88542 1.86156 1.64185 1.28179 1.47750 1.23246 1.02345 0.78933 1.02855 1.22183 1.02138 0.96037 1.00317 1.23682 0.97709 1.00242 0.99185 1.22745 0.94664 0.97474 1.01444 1.23214 0.96536 0.99612 0.96679 0.97063 0.94261 0.93440 0.95206 0.94445 0.93626 0.84759 0.83222 0.82555 0.83785 0.91768 0.87709 0.91322 0.81883 0.89847 0.93335 0.90398 0.89041 0.90688 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -4.01 8.28 71.98 0.60 -3.42 16 2 C -0.11 -5.17 5.01 30.60 0.15 -5.01 16 3 C 0.22 10.67 0.79 44.17 0.03 10.70 16 4 H 0.02 1.17 4.08 -2.39 -0.01 1.16 16 5 C -0.49 -27.40 6.65 25.60 0.17 -27.23 16 6 H 0.04 2.25 7.81 -2.91 -0.02 2.23 16 7 C 0.02 1.30 5.30 84.66 0.45 1.75 16 8 N -0.89 -49.84 8.28 21.45 0.18 -49.66 16 9 Si 0.93 46.09 29.54 68.60 2.03 48.12 16 10 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 13 N -0.67 -28.05 6.26 -453.19 -2.84 -30.89 16 14 C 0.12 4.42 0.98 3.31 0.00 4.43 16 15 C -0.03 -1.30 5.22 -19.88 -0.10 -1.40 16 16 C -0.16 -4.92 9.27 22.28 0.21 -4.72 16 17 C -0.09 -2.51 10.04 22.26 0.22 -2.28 16 18 C -0.22 -7.07 9.04 22.37 0.20 -6.86 16 19 C 0.10 4.01 6.69 22.51 0.15 4.16 16 20 O -0.35 -14.83 10.50 -92.43 -0.97 -15.80 16 21 C 0.02 0.58 9.81 113.37 1.11 1.69 16 22 C -0.19 -8.75 8.38 22.37 0.19 -8.56 16 23 C -0.17 -5.38 6.96 31.12 0.22 -5.17 16 24 C -0.13 -3.08 7.75 31.12 0.24 -2.84 16 25 C -0.12 -3.20 7.00 31.12 0.22 -2.99 16 26 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.04 2.03 6.26 -2.38 -0.01 2.02 16 28 H 0.05 2.39 6.67 -2.38 -0.02 2.38 16 29 H 0.03 1.47 7.82 -2.39 -0.02 1.45 16 30 H 0.04 1.52 7.48 -2.39 -0.02 1.50 16 31 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 32 H 0.33 12.74 6.97 -89.69 -0.62 12.12 16 33 H 0.15 3.48 5.65 -2.91 -0.02 3.47 16 34 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.14 3.63 6.30 -2.91 -0.02 3.61 16 36 H 0.06 1.57 7.68 -2.39 -0.02 1.55 16 37 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.07 1.61 7.65 -2.39 -0.02 1.59 16 39 H 0.16 8.87 2.60 -2.91 -0.01 8.86 16 40 H 0.08 2.51 8.09 -2.39 -0.02 2.49 16 41 H 0.05 1.78 7.05 -2.39 -0.02 1.76 16 42 H 0.08 1.91 7.74 -2.38 -0.02 1.89 16 43 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.11 2.33 5.66 -2.39 -0.01 2.31 16 Total: -1.00 -65.35 337.49 2.83 -62.51 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.38 Total: 33.47 kcal Atomic # 6 Polarization: -51.80 SS G_CDS: 4.06 Total: -47.74 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -2.66 Total: -80.55 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.97 Total: -15.80 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -65.35 2.83 -62.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.451 kcal (2) G-P(sol) polarization free energy of solvation -65.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds