Wall clock time and date at job start Tue Mar 31 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 H 1.08998 * 109.47634 * 56.28698 * 3 2 1 5 5 C 1.50705 * 109.47182 * 176.28587 * 3 2 1 6 6 H 1.08003 * 119.99988 * 119.99789 * 5 3 2 7 7 C 1.37872 * 119.99799 * 299.99938 * 5 3 2 8 8 N 1.31510 * 120.00231 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99808 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47183 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47117 * 119.99979 * 9 7 5 12 12 H 1.48497 * 109.47342 * 240.00276 * 9 7 5 13 13 N 1.46899 * 109.47270 * 296.28670 * 3 2 1 14 14 C 1.46900 * 111.00081 * 126.18007 * 13 3 2 15 15 C 1.50696 * 112.85167 * 301.69950 * 14 13 3 16 16 C 1.38164 * 120.02634 * 103.25172 * 15 14 13 17 17 C 1.38247 * 120.05175 * 179.97438 * 16 15 14 18 18 C 1.38287 * 120.11368 * 0.02562 * 17 16 15 19 19 C 1.38122 * 120.05805 * 0.02562 * 18 17 16 20 20 C 1.38710 * 120.02691 * 283.23569 * 15 14 13 21 21 O 1.35899 * 120.05752 * 0.02562 * 20 15 14 22 22 C 1.42907 * 117.00105 * 180.02562 * 21 20 15 23 23 C 1.53775 * 113.68832 * 72.97062 * 14 13 3 24 24 C 1.53778 * 87.08577 * 89.12440 * 23 14 13 25 25 C 1.53783 * 113.61109 * 170.50260 * 14 13 3 26 26 H 1.09001 * 109.47344 * 184.97948 * 1 2 3 27 27 H 1.08998 * 109.47751 * 304.98562 * 1 2 3 28 28 H 1.09002 * 109.46945 * 64.98040 * 1 2 3 29 29 H 1.09001 * 109.47329 * 239.99995 * 2 1 3 30 30 H 1.09000 * 109.46817 * 119.99625 * 2 1 3 31 31 H 0.97006 * 120.00135 * 180.02562 * 8 7 5 32 32 H 1.00902 * 110.99646 * 2.22627 * 13 3 2 33 33 H 1.07998 * 119.97527 * 359.96358 * 16 15 14 34 34 H 1.07997 * 119.93940 * 180.02562 * 17 16 15 35 35 H 1.08006 * 119.97141 * 180.28023 * 18 17 16 36 36 H 1.07999 * 120.02923 * 179.97438 * 19 18 17 37 37 H 1.08997 * 109.46402 * 299.99681 * 22 21 20 38 38 H 1.08995 * 109.46989 * 59.99711 * 22 21 20 39 39 H 1.09002 * 109.47186 * 179.97438 * 22 21 20 40 40 H 1.09004 * 113.61369 * 203.67621 * 23 14 13 41 41 H 1.09000 * 113.61811 * 334.57818 * 23 14 13 42 42 H 1.08997 * 113.61647 * 270.88259 * 24 23 14 43 43 H 1.09003 * 113.69476 * 139.98443 * 24 23 14 44 44 H 1.09000 * 113.61941 * 25.35223 * 25 14 13 45 45 H 1.09006 * 113.61201 * 156.16737 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6233 1.9753 0.8548 5 6 3.5442 1.4435 0.0920 6 1 4.1329 1.8939 -0.6934 7 6 4.1687 0.8695 1.1789 8 7 3.4517 0.3205 2.1351 9 14 6.0332 0.8701 1.2927 10 1 6.6018 1.5442 0.0979 11 1 6.4542 1.5966 2.5175 12 1 6.5259 -0.5295 1.3533 13 7 1.6249 2.1087 -1.2417 14 6 0.9075 3.3580 -0.9546 15 6 -0.3163 3.1472 -0.1008 16 6 -0.2858 3.4687 1.2425 17 6 -1.4084 3.2760 2.0261 18 6 -2.5640 2.7608 1.4680 19 6 -2.5992 2.4368 0.1258 20 6 -1.4742 2.6305 -0.6631 21 8 -1.5066 2.3134 -1.9842 22 6 -2.7328 1.7865 -2.4951 23 6 1.8180 4.4928 -0.4566 24 6 2.0103 4.8802 -1.9323 25 6 0.6478 4.2197 -2.2015 26 1 -0.3634 -1.0238 0.0892 27 1 -0.3634 0.5892 0.8419 28 1 -0.3633 0.4346 -0.9313 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8911 -0.0830 2.9000 32 1 1.0650 1.4931 -1.8125 33 1 0.6156 3.8706 1.6809 34 1 -1.3827 3.5283 3.0759 35 1 -3.4410 2.6154 2.0813 36 1 -3.5018 2.0340 -0.3095 37 1 -2.9807 0.8660 -1.9667 38 1 -3.5301 2.5152 -2.3492 39 1 -2.6229 1.5769 -3.5591 40 1 1.2937 5.2484 0.1285 41 1 2.7305 4.1411 0.0249 42 1 2.8452 4.3700 -2.4125 43 1 2.0156 5.9563 -2.1056 44 1 0.6154 3.6476 -3.1287 45 1 -0.1974 4.8997 -2.0940 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:16 Heat of formation + Delta-G solvation = 10.647172 kcal Electronic energy + Delta-G solvation = -25096.966632 eV Core-core repulsion = 21887.416941 eV Total energy + Delta-G solvation = -3209.549692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43118 -38.33842 -36.79249 -35.07483 -31.93040 -30.82182 -29.82169 -29.61967 -27.16494 -26.50573 -24.97665 -23.92794 -22.62773 -21.61453 -21.19443 -19.47234 -18.24673 -17.69617 -16.22491 -15.87470 -15.69746 -15.53388 -14.82509 -14.57278 -14.16792 -13.92676 -13.67531 -13.42909 -13.25886 -12.84004 -12.45617 -12.14459 -11.90805 -11.63742 -11.49123 -11.43250 -11.09819 -10.93640 -10.90273 -10.85925 -10.73276 -10.51975 -10.25646 -10.07428 -9.83920 -9.65844 -9.52684 -9.28794 -8.98731 -8.44832 -8.20848 -7.78579 -7.09006 -5.87069 -3.89395 1.70818 1.81250 3.36196 3.44373 3.49814 3.52946 4.13719 4.52070 4.99238 5.03650 5.16359 5.20940 5.24224 5.28672 5.41539 5.42761 5.49356 5.55442 5.61462 5.71297 5.82305 6.04954 6.09030 6.24954 6.27395 6.29735 6.33003 6.37781 6.50176 6.54358 6.63000 6.75045 6.88022 6.92900 6.98425 7.01608 7.05380 7.15849 7.19127 7.32787 7.62195 7.70663 7.87116 8.03636 8.45591 8.64273 8.82229 9.19203 9.74704 11.18061 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.006446 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.161879 B = 4342.786795 C = 4741.679286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.217 3.783 4 H 0.029 0.971 5 C -0.483 4.483 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.650 5.650 14 C 0.148 3.852 15 C -0.111 4.111 16 C -0.064 4.064 17 C -0.158 4.158 18 C -0.092 4.092 19 C -0.216 4.216 20 C 0.137 3.863 21 O -0.307 6.307 22 C 0.028 3.972 23 C -0.130 4.130 24 C -0.127 4.127 25 C -0.118 4.118 26 H 0.028 0.972 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.097 0.903 31 H 0.256 0.744 32 H 0.326 0.674 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.588 5.642 -5.085 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C 0.110 3.890 4 H 0.046 0.954 5 C -0.523 4.523 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.280 5.280 14 C 0.055 3.945 15 C -0.114 4.114 16 C -0.082 4.082 17 C -0.176 4.176 18 C -0.111 4.111 19 C -0.235 4.235 20 C 0.091 3.909 21 O -0.220 6.220 22 C -0.067 4.067 23 C -0.168 4.168 24 C -0.165 4.165 25 C -0.156 4.156 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.764 5.863 -5.184 14.129 hybrid contribution -0.308 -0.760 0.734 1.101 sum -12.072 5.103 -4.450 13.841 Atomic orbital electron populations 1.21976 0.99528 0.99019 1.00066 1.21986 0.91356 1.01410 1.02687 1.19208 0.94826 0.89018 0.85990 0.95365 1.21335 0.91295 1.34904 1.04728 0.92020 1.24948 0.97791 0.95949 0.95989 1.69894 1.34467 1.39449 1.09942 0.86568 0.86399 0.77424 0.77750 1.19826 1.21384 1.21394 1.60924 1.40816 1.05396 1.20831 1.20777 0.88162 0.92348 0.93182 1.20078 0.94589 1.01734 0.95020 1.20975 0.97887 0.97077 0.92302 1.21003 0.93592 1.03261 0.99777 1.20773 0.97873 0.98246 0.94180 1.21081 0.98160 1.08803 0.95439 1.18755 0.93770 0.95609 0.82755 1.86144 1.35675 1.78404 1.21755 1.22971 0.85974 0.97960 0.99813 1.22979 1.00912 0.96402 0.96466 1.22638 0.97956 0.98476 0.97386 1.22867 0.96723 0.98009 0.97957 0.95295 0.93736 0.94236 0.94746 0.88451 0.93379 0.85568 0.85326 0.86462 0.86656 0.86308 0.93042 0.93259 0.88639 0.91352 0.89377 0.89623 0.93080 0.91532 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.23 37.15 0.31 -2.76 16 2 C -0.14 -3.26 5.12 -26.73 -0.14 -3.40 16 3 C 0.22 5.29 1.43 -68.86 -0.10 5.19 16 4 H 0.03 0.75 5.70 -51.93 -0.30 0.45 16 5 C -0.48 -13.20 8.50 -34.44 -0.29 -13.49 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.05 1.46 5.30 -17.82 -0.09 1.37 16 8 N -0.90 -25.53 11.30 55.43 0.63 -24.90 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 N -0.65 -13.83 6.03 -94.59 -0.57 -14.40 16 14 C 0.15 2.73 0.37 -131.95 -0.05 2.68 16 15 C -0.11 -1.98 3.01 -104.48 -0.31 -2.30 16 16 C -0.06 -1.13 7.72 -39.61 -0.31 -1.44 16 17 C -0.16 -2.47 10.04 -39.56 -0.40 -2.87 16 18 C -0.09 -1.32 10.04 -39.61 -0.40 -1.72 16 19 C -0.22 -3.14 9.04 -39.43 -0.36 -3.50 16 20 C 0.14 2.21 4.36 -39.21 -0.17 2.04 16 21 O -0.31 -4.61 8.22 -19.42 -0.16 -4.77 16 22 C 0.03 0.30 9.81 101.05 0.99 1.29 16 23 C -0.13 -2.36 6.20 -25.92 -0.16 -2.52 16 24 C -0.13 -2.08 8.00 -25.92 -0.21 -2.28 16 25 C -0.12 -1.92 6.21 -25.92 -0.16 -2.08 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.96 7.41 -51.93 -0.38 0.57 16 28 H 0.04 0.76 4.90 -51.93 -0.25 0.50 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.10 2.64 5.98 -51.93 -0.31 2.33 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.33 6.84 6.85 -39.29 -0.27 6.57 16 33 H 0.13 2.35 6.97 -52.49 -0.37 1.98 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.12 1.43 6.30 -52.49 -0.33 1.10 16 37 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 38 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.12 7.43 -51.93 -0.39 0.74 16 41 H 0.09 1.86 7.55 -51.93 -0.39 1.47 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -28.88 343.36 -8.93 -37.81 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.13 Total: 10.25 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -1.85 Total: -25.78 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.06 Total: -39.30 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.16 Total: -4.77 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.88 -8.93 -37.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.457 kcal (2) G-P(sol) polarization free energy of solvation -28.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds