Wall clock time and date at job start Tue Mar 31 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 H 1.08998 * 109.47634 * 56.28698 * 3 2 1 5 5 C 1.50705 * 109.47182 * 176.28587 * 3 2 1 6 6 H 1.08003 * 119.99988 * 119.99789 * 5 3 2 7 7 C 1.37872 * 119.99799 * 299.99938 * 5 3 2 8 8 N 1.31510 * 120.00231 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99808 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47183 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47117 * 119.99979 * 9 7 5 12 12 H 1.48497 * 109.47342 * 240.00276 * 9 7 5 13 13 N 1.46899 * 109.47270 * 296.28670 * 3 2 1 14 14 C 1.46900 * 111.00081 * 126.18007 * 13 3 2 15 15 C 1.50696 * 112.85167 * 301.69950 * 14 13 3 16 16 C 1.38164 * 120.02634 * 103.25172 * 15 14 13 17 17 C 1.38247 * 120.05175 * 179.97438 * 16 15 14 18 18 C 1.38287 * 120.11368 * 0.02562 * 17 16 15 19 19 C 1.38122 * 120.05805 * 0.02562 * 18 17 16 20 20 C 1.38710 * 120.02691 * 283.23569 * 15 14 13 21 21 O 1.35899 * 120.05752 * 0.02562 * 20 15 14 22 22 C 1.42907 * 117.00105 * 180.02562 * 21 20 15 23 23 C 1.53775 * 113.68832 * 72.97062 * 14 13 3 24 24 C 1.53778 * 87.08577 * 89.12440 * 23 14 13 25 25 C 1.53783 * 113.61109 * 170.50260 * 14 13 3 26 26 H 1.09001 * 109.47344 * 184.97948 * 1 2 3 27 27 H 1.08998 * 109.47751 * 304.98562 * 1 2 3 28 28 H 1.09002 * 109.46945 * 64.98040 * 1 2 3 29 29 H 1.09001 * 109.47329 * 239.99995 * 2 1 3 30 30 H 1.09000 * 109.46817 * 119.99625 * 2 1 3 31 31 H 0.97006 * 120.00135 * 180.02562 * 8 7 5 32 32 H 1.00902 * 110.99646 * 2.22627 * 13 3 2 33 33 H 1.07998 * 119.97527 * 359.96358 * 16 15 14 34 34 H 1.07997 * 119.93940 * 180.02562 * 17 16 15 35 35 H 1.08006 * 119.97141 * 180.28023 * 18 17 16 36 36 H 1.07999 * 120.02923 * 179.97438 * 19 18 17 37 37 H 1.08997 * 109.46402 * 299.99681 * 22 21 20 38 38 H 1.08995 * 109.46989 * 59.99711 * 22 21 20 39 39 H 1.09002 * 109.47186 * 179.97438 * 22 21 20 40 40 H 1.09004 * 113.61369 * 203.67621 * 23 14 13 41 41 H 1.09000 * 113.61811 * 334.57818 * 23 14 13 42 42 H 1.08997 * 113.61647 * 270.88259 * 24 23 14 43 43 H 1.09003 * 113.69476 * 139.98443 * 24 23 14 44 44 H 1.09000 * 113.61941 * 25.35223 * 25 14 13 45 45 H 1.09006 * 113.61201 * 156.16737 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6233 1.9753 0.8548 5 6 3.5442 1.4435 0.0920 6 1 4.1329 1.8939 -0.6934 7 6 4.1687 0.8695 1.1789 8 7 3.4517 0.3205 2.1351 9 14 6.0332 0.8701 1.2927 10 1 6.6018 1.5442 0.0979 11 1 6.4542 1.5966 2.5175 12 1 6.5259 -0.5295 1.3533 13 7 1.6249 2.1087 -1.2417 14 6 0.9075 3.3580 -0.9546 15 6 -0.3163 3.1472 -0.1008 16 6 -0.2858 3.4687 1.2425 17 6 -1.4084 3.2760 2.0261 18 6 -2.5640 2.7608 1.4680 19 6 -2.5992 2.4368 0.1258 20 6 -1.4742 2.6305 -0.6631 21 8 -1.5066 2.3134 -1.9842 22 6 -2.7328 1.7865 -2.4951 23 6 1.8180 4.4928 -0.4566 24 6 2.0103 4.8802 -1.9323 25 6 0.6478 4.2197 -2.2015 26 1 -0.3634 -1.0238 0.0892 27 1 -0.3634 0.5892 0.8419 28 1 -0.3633 0.4346 -0.9313 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8911 -0.0830 2.9000 32 1 1.0650 1.4931 -1.8125 33 1 0.6156 3.8706 1.6809 34 1 -1.3827 3.5283 3.0759 35 1 -3.4410 2.6154 2.0813 36 1 -3.5018 2.0340 -0.3095 37 1 -2.9807 0.8660 -1.9667 38 1 -3.5301 2.5152 -2.3492 39 1 -2.6229 1.5769 -3.5591 40 1 1.2937 5.2484 0.1285 41 1 2.7305 4.1411 0.0249 42 1 2.8452 4.3700 -2.4125 43 1 2.0156 5.9563 -2.1056 44 1 0.6154 3.6476 -3.1287 45 1 -0.1974 4.8997 -2.0940 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:15 Heat of formation + Delta-G solvation = -5.486306 kcal Electronic energy + Delta-G solvation = -25097.666232 eV Core-core repulsion = 21887.416941 eV Total energy + Delta-G solvation = -3210.249292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.70076 -39.62484 -37.95497 -36.90825 -33.94433 -32.16843 -31.28252 -30.95426 -28.42985 -28.08618 -26.40258 -25.39011 -24.45974 -22.79680 -22.45055 -21.36998 -19.64953 -18.89177 -18.22238 -17.25614 -16.86525 -16.58688 -16.52896 -16.24701 -15.44072 -15.39233 -15.16473 -14.89529 -14.66500 -14.47238 -13.88149 -13.57236 -13.24445 -13.10978 -13.04576 -12.89973 -12.74809 -12.62231 -12.45756 -12.19506 -12.04698 -11.94453 -11.86369 -11.71053 -11.55207 -11.46525 -11.27620 -10.82500 -10.80788 -10.36128 -9.65923 -9.03505 -8.76629 -7.98886 -6.08431 0.49569 0.61616 1.39929 1.42576 1.54021 2.47336 2.51770 2.92574 3.25533 3.62732 3.78030 3.90368 4.04890 4.12799 4.20823 4.29980 4.36443 4.47078 4.48937 4.52298 4.56866 4.62903 4.67407 4.74521 4.80307 4.87709 4.91473 4.98985 5.14342 5.16828 5.19097 5.29149 5.34467 5.38739 5.47433 5.54897 5.59149 5.64387 5.70926 5.74896 5.86395 5.94624 5.99618 6.46037 6.61378 6.79608 7.04310 7.06161 7.59699 9.03528 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.006446 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.161879 B = 4342.786795 C = 4741.679286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.230 3.770 4 H 0.006 0.994 5 C -0.498 4.498 6 H 0.046 0.954 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.947 3.053 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.654 5.654 14 C 0.140 3.860 15 C -0.132 4.132 16 C -0.086 4.086 17 C -0.169 4.169 18 C -0.088 4.088 19 C -0.215 4.215 20 C 0.134 3.866 21 O -0.323 6.323 22 C 0.019 3.981 23 C -0.133 4.133 24 C -0.119 4.119 25 C -0.100 4.100 26 H 0.044 0.956 27 H 0.033 0.967 28 H 0.054 0.946 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.256 0.744 32 H 0.327 0.673 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.711 5.864 -6.049 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.170 4.170 3 C 0.122 3.878 4 H 0.024 0.976 5 C -0.537 4.537 6 H 0.064 0.936 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.283 5.283 14 C 0.049 3.951 15 C -0.135 4.135 16 C -0.105 4.105 17 C -0.187 4.187 18 C -0.106 4.106 19 C -0.234 4.234 20 C 0.089 3.911 21 O -0.237 6.237 22 C -0.076 4.076 23 C -0.171 4.171 24 C -0.157 4.157 25 C -0.138 4.138 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.145 0.855 33 H 0.125 0.875 34 H 0.149 0.851 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.896 6.093 -6.163 16.377 hybrid contribution 0.292 -0.816 1.018 1.337 sum -13.605 5.276 -5.146 15.473 Atomic orbital electron populations 1.21752 0.96623 0.99882 1.00345 1.21822 0.93907 1.00600 1.00639 1.18866 0.93128 0.89213 0.86572 0.97619 1.21590 0.93098 1.34641 1.04378 0.93551 1.25598 1.01648 0.95799 0.95787 1.70017 1.35814 1.40006 1.10256 0.85666 0.81821 0.77410 0.77650 1.19690 1.20983 1.20963 1.60770 1.42090 1.06083 1.19390 1.20819 0.88558 0.90994 0.94776 1.19951 0.95009 1.03585 0.94940 1.20948 0.98071 0.98481 0.92952 1.21225 0.93581 1.03491 1.00416 1.21168 0.98225 0.96569 0.94597 1.21450 0.98625 1.07886 0.95404 1.18788 0.93580 0.95187 0.83587 1.86117 1.38069 1.78480 1.21023 1.23288 0.84957 0.98490 1.00855 1.22972 0.99404 0.97142 0.97586 1.22575 0.97609 1.00031 0.95453 1.22755 0.96902 0.97408 0.96747 0.93736 0.94828 0.92692 0.95414 0.91687 0.93452 0.85454 0.87505 0.85128 0.83407 0.83331 0.92509 0.91494 0.86680 0.89965 0.93375 0.91254 0.90397 0.91395 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.23 71.98 0.59 -4.63 16 2 C -0.13 -6.41 5.12 30.59 0.16 -6.25 16 3 C 0.23 11.62 1.43 44.17 0.06 11.69 16 4 H 0.01 0.33 5.70 -2.39 -0.01 0.32 16 5 C -0.50 -28.19 8.50 25.60 0.22 -27.98 16 6 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 7 C 0.01 0.51 5.30 84.65 0.45 0.96 16 8 N -0.92 -53.87 11.30 21.44 0.24 -53.63 16 9 Si 0.95 45.44 29.54 68.60 2.03 47.47 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 N -0.65 -28.33 6.03 -453.19 -2.73 -31.06 16 14 C 0.14 5.22 0.37 3.30 0.00 5.22 16 15 C -0.13 -4.66 3.01 -19.77 -0.06 -4.72 16 16 C -0.09 -3.09 7.72 22.25 0.17 -2.92 16 17 C -0.17 -5.14 10.04 22.28 0.22 -4.91 16 18 C -0.09 -2.26 10.04 22.25 0.22 -2.04 16 19 C -0.22 -5.57 9.04 22.37 0.20 -5.37 16 20 C 0.13 4.08 4.36 22.51 0.10 4.18 16 21 O -0.32 -8.89 8.22 -92.41 -0.76 -9.65 16 22 C 0.02 0.33 9.81 113.37 1.11 1.44 16 23 C -0.13 -4.98 6.20 31.12 0.19 -4.79 16 24 C -0.12 -3.84 8.00 31.12 0.25 -3.59 16 25 C -0.10 -3.14 6.21 31.12 0.19 -2.95 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.03 1.42 7.41 -2.39 -0.02 1.40 16 28 H 0.05 2.04 4.90 -2.39 -0.01 2.03 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 3.63 5.98 -2.39 -0.01 3.62 16 31 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 32 H 0.33 13.73 6.85 -89.69 -0.61 13.12 16 33 H 0.11 4.17 6.97 -2.91 -0.02 4.15 16 34 H 0.13 3.47 8.06 -2.91 -0.02 3.44 16 35 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 36 H 0.15 2.90 6.30 -2.91 -0.02 2.88 16 37 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 38 H 0.07 0.96 7.67 -2.39 -0.02 0.94 16 39 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 2.78 7.43 -2.38 -0.02 2.76 16 41 H 0.05 2.16 7.55 -2.39 -0.02 2.14 16 42 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.08 2.37 8.09 -2.38 -0.02 2.35 16 Total: -1.00 -63.96 343.36 3.23 -60.73 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.36 Total: 32.80 kcal Atomic # 6 Polarization: -50.75 SS G_CDS: 4.09 Total: -46.66 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -2.49 Total: -84.69 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.76 Total: -9.65 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -63.96 3.23 -60.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.243 kcal (2) G-P(sol) polarization free energy of solvation -63.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds