Wall clock time and date at job start Tue Mar 31 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47099 * 2 1 4 4 H 1.08997 * 109.46860 * 33.22248 * 3 2 1 5 5 C 1.50703 * 109.47159 * 153.22386 * 3 2 1 6 6 H 1.08000 * 119.99445 * 114.32695 * 5 3 2 7 7 C 1.37876 * 120.00134 * 294.33127 * 5 3 2 8 8 N 1.31521 * 119.99747 * 0.92507 * 7 5 3 9 9 Si 1.86793 * 120.00153 * 180.92740 * 7 5 3 10 10 H 1.48503 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46995 * 119.99879 * 9 7 5 12 12 H 1.48495 * 109.47270 * 239.99886 * 9 7 5 13 13 N 1.46899 * 109.46831 * 273.22253 * 3 2 1 14 14 C 1.46909 * 110.99819 * 86.59537 * 13 3 2 15 15 C 1.52997 * 115.54982 * 50.88594 * 14 13 3 16 16 C 1.50702 * 109.46949 * 60.86483 * 15 14 13 17 17 C 1.38165 * 120.02973 * 258.03813 * 16 15 14 18 18 C 1.38243 * 120.05663 * 179.97438 * 17 16 15 19 19 C 1.38290 * 120.11268 * 0.04213 * 18 17 16 20 20 C 1.38124 * 120.05241 * 359.97438 * 19 18 17 21 21 C 1.38712 * 120.02692 * 78.02365 * 16 15 14 22 22 O 1.35906 * 120.05627 * 0.03817 * 21 16 15 23 23 C 1.42901 * 116.99694 * 180.02562 * 22 21 16 24 24 C 1.52995 * 117.49523 * 196.55915 * 14 13 3 25 25 C 1.53002 * 117.49450 * 265.21628 * 14 13 3 26 26 H 1.09002 * 109.47435 * 302.19881 * 1 2 3 27 27 H 1.09004 * 109.47078 * 62.19791 * 1 2 3 28 28 H 1.09001 * 109.47296 * 182.19288 * 1 2 3 29 29 H 1.09000 * 109.47332 * 240.00024 * 2 1 3 30 30 H 1.08999 * 109.47202 * 119.99628 * 2 1 3 31 31 H 0.97003 * 119.99630 * 180.02562 * 8 7 5 32 32 H 1.00908 * 110.99954 * 210.54362 * 13 3 2 33 33 H 1.09005 * 109.47452 * 300.86406 * 15 14 13 34 34 H 1.08996 * 109.47026 * 180.86494 * 15 14 13 35 35 H 1.08000 * 119.97104 * 359.97438 * 17 16 15 36 36 H 1.08000 * 119.94266 * 180.02562 * 18 17 16 37 37 H 1.07997 * 119.97383 * 179.70488 * 19 18 17 38 38 H 1.08003 * 120.02521 * 179.97438 * 20 19 18 39 39 H 1.08995 * 109.47046 * 60.00624 * 23 22 21 40 40 H 1.09004 * 109.46368 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47007 * 299.99671 * 23 22 21 42 42 H 1.09002 * 117.49652 * 215.00239 * 24 14 13 43 43 H 1.09003 * 117.50336 * 0.02562 * 24 14 13 44 44 H 1.09001 * 117.49981 * 359.97438 * 25 14 13 45 45 H 1.08994 * 117.49503 * 144.97078 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3505 2.0716 0.5630 5 6 3.4034 1.4933 0.6401 6 1 4.2668 1.7643 0.0506 7 6 3.5484 1.1939 1.9781 8 7 2.4996 0.8462 2.6915 9 14 5.2343 1.2820 2.7776 10 1 6.2405 1.6952 1.7666 11 1 5.2070 2.2740 3.8823 12 1 5.5955 -0.0525 3.3195 13 7 2.1298 1.9301 -1.3828 14 6 0.8461 2.4886 -1.8285 15 6 0.2155 3.5217 -0.8927 16 6 1.1438 4.6999 -0.7467 17 6 1.9196 4.8324 0.3888 18 6 2.7717 5.9126 0.5231 19 6 2.8493 6.8637 -0.4778 20 6 2.0755 6.7360 -1.6148 21 6 1.2202 5.6522 -1.7524 22 8 0.4577 5.5244 -2.8702 23 6 0.5887 6.5423 -3.8646 24 6 0.6439 2.6813 -3.3327 25 6 -0.0982 1.5624 -2.5975 26 1 -0.3634 0.5476 0.8696 27 1 -0.3633 0.4793 -0.9091 28 1 -0.3634 -1.0269 0.0393 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.6016 0.6359 3.6330 32 1 2.8718 2.6069 -1.4801 33 1 0.0448 3.0704 0.0847 34 1 -0.7344 3.8570 -1.3090 35 1 1.8603 4.0913 1.1722 36 1 3.3776 6.0141 1.4113 37 1 3.5122 7.7092 -0.3685 38 1 2.1361 7.4792 -2.3961 39 1 1.6199 6.5765 -4.2159 40 1 -0.0728 6.3194 -4.7018 41 1 0.3189 7.5069 -3.4348 42 1 0.0615 3.5442 -3.6557 43 1 1.4630 2.3933 -3.9917 44 1 0.2331 0.5389 -2.7731 45 1 -1.1688 1.6889 -2.4364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:52 Heat of formation + Delta-G solvation = 12.035755 kcal Electronic energy + Delta-G solvation = -24574.676725 eV Core-core repulsion = 21365.187247 eV Total energy + Delta-G solvation = -3209.489478 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.09586 -38.02849 -36.95536 -34.44760 -32.00427 -31.57749 -30.06669 -29.75207 -27.44287 -26.40727 -25.88473 -22.64481 -22.12180 -21.71127 -21.31118 -19.77943 -18.21462 -17.64185 -16.54955 -16.03691 -15.64437 -15.30101 -14.77007 -14.73167 -14.07981 -13.94723 -13.75834 -13.45468 -12.96334 -12.61123 -12.35795 -12.32724 -12.00552 -11.90720 -11.63606 -11.53577 -11.07104 -10.98487 -10.91673 -10.80912 -10.79536 -10.57627 -10.52334 -10.09429 -9.74334 -9.66693 -9.38635 -8.84635 -8.66478 -8.47620 -8.32648 -7.82393 -7.11915 -5.98877 -4.02987 1.70237 1.81462 3.29621 3.38629 3.42935 3.47199 4.12346 4.42678 4.49371 4.99185 5.09448 5.15945 5.18218 5.20482 5.33545 5.43304 5.46891 5.49091 5.62170 5.70383 5.84191 5.88720 6.11127 6.22413 6.34671 6.36903 6.40937 6.47173 6.53948 6.55549 6.60715 6.66547 6.77239 6.82899 6.85131 7.03849 7.20519 7.21700 7.34882 7.53627 7.62168 7.67599 7.86515 8.01357 8.33915 8.49409 8.80506 9.11404 9.62241 11.07876 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.006949 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.944083 B = 4028.651856 C = 5426.841628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.096 4.096 3 C 0.216 3.784 4 H 0.021 0.979 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.652 5.652 14 C 0.064 3.936 15 C -0.063 4.063 16 C -0.100 4.100 17 C -0.057 4.057 18 C -0.153 4.153 19 C -0.092 4.092 20 C -0.217 4.217 21 C 0.127 3.873 22 O -0.307 6.307 23 C 0.028 3.972 24 C -0.171 4.171 25 C -0.164 4.164 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.023 0.977 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.259 0.741 32 H 0.332 0.668 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.141 0.859 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.591 10.605 -9.242 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.135 4.135 3 C 0.109 3.891 4 H 0.038 0.962 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.282 5.282 14 C -0.029 4.029 15 C -0.103 4.103 16 C -0.101 4.101 17 C -0.075 4.075 18 C -0.172 4.172 19 C -0.111 4.111 20 C -0.236 4.236 21 C 0.083 3.917 22 O -0.221 6.221 23 C -0.068 4.068 24 C -0.209 4.209 25 C -0.202 4.202 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.159 0.841 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.114 0.886 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.874 9.768 -9.380 14.393 hybrid contribution 1.161 1.048 1.027 1.871 sum -3.713 10.817 -8.353 14.162 Atomic orbital electron populations 1.22117 0.99373 0.98839 1.01069 1.21457 0.92152 0.99646 1.00247 1.19222 0.95914 0.91889 0.82083 0.96190 1.21333 0.93606 1.46136 0.94083 0.92565 1.24863 0.96272 0.95395 0.97260 1.69982 1.28585 1.46330 1.07583 0.86629 0.84999 0.77574 0.79355 1.19854 1.21196 1.21166 1.60689 1.01566 1.38784 1.27149 1.21260 0.93941 0.96232 0.91426 1.20455 0.96233 0.92224 1.01343 1.19185 1.01389 0.96203 0.93283 1.21237 0.92888 0.96623 0.96790 1.21055 1.00834 0.95554 0.99716 1.20823 0.98189 0.98687 0.93369 1.21052 1.02101 0.99777 1.00679 1.18801 0.91739 0.94360 0.86830 1.86124 1.61420 1.47550 1.26961 1.22961 1.02091 0.90959 0.90767 1.23130 1.02822 1.00119 0.94800 1.22966 0.96476 0.96259 1.04465 0.93973 0.92481 0.95769 0.94849 0.90895 0.93159 0.84925 0.89934 0.91563 0.84145 0.86252 0.86608 0.86277 0.92980 0.88750 0.93250 0.88607 0.89655 0.88647 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 9.59 37.16 0.36 -2.94 16 2 C -0.10 -2.31 5.49 -26.73 -0.15 -2.46 16 3 C 0.22 5.16 1.98 -68.86 -0.14 5.02 16 4 H 0.02 0.52 4.20 -51.93 -0.22 0.30 16 5 C -0.51 -13.52 8.47 -34.44 -0.29 -13.81 16 6 H 0.06 1.52 7.65 -52.49 -0.40 1.12 16 7 C 0.06 1.71 5.13 -17.82 -0.09 1.62 16 8 N -0.89 -24.49 11.92 55.43 0.66 -23.83 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.65 -13.83 6.29 -94.24 -0.59 -14.42 16 14 C 0.06 1.17 1.31 -131.60 -0.17 1.00 16 15 C -0.06 -1.14 4.40 -27.88 -0.12 -1.26 16 16 C -0.10 -1.76 4.83 -104.47 -0.50 -2.26 16 17 C -0.06 -1.06 9.52 -39.61 -0.38 -1.43 16 18 C -0.15 -2.50 10.04 -39.56 -0.40 -2.90 16 19 C -0.09 -1.32 10.04 -39.60 -0.40 -1.72 16 20 C -0.22 -3.06 9.04 -39.43 -0.36 -3.42 16 21 C 0.13 2.00 6.64 -39.22 -0.26 1.74 16 22 O -0.31 -4.30 7.07 -19.44 -0.14 -4.44 16 23 C 0.03 0.27 9.81 101.05 0.99 1.26 16 24 C -0.17 -2.75 9.49 -26.70 -0.25 -3.00 16 25 C -0.16 -2.73 7.20 -26.69 -0.19 -2.92 16 26 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 27 H 0.06 1.09 3.66 -51.93 -0.19 0.90 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.07 1.97 6.37 -51.93 -0.33 1.64 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.33 7.32 8.09 -39.29 -0.32 7.01 16 33 H 0.08 1.64 6.15 -51.93 -0.32 1.32 16 34 H 0.07 1.11 7.88 -51.93 -0.41 0.70 16 35 H 0.14 2.93 7.20 -52.49 -0.38 2.55 16 36 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.12 1.36 6.30 -52.48 -0.33 1.03 16 39 H 0.05 0.47 7.67 -51.93 -0.40 0.08 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 42 H 0.10 1.43 6.13 -51.93 -0.32 1.12 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.10 1.68 7.83 -51.93 -0.41 1.27 16 45 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -27.76 349.01 -9.11 -36.87 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -6.92 Total: 12.07 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: -2.35 Total: -27.50 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.07 Total: -38.25 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.14 Total: -4.44 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.76 -9.11 -36.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.909 kcal (2) G-P(sol) polarization free energy of solvation -27.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds