Wall clock time and date at job start Tue Mar 31 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47099 * 2 1 4 4 H 1.08997 * 109.46860 * 33.22248 * 3 2 1 5 5 C 1.50703 * 109.47159 * 153.22386 * 3 2 1 6 6 H 1.08000 * 119.99445 * 114.32695 * 5 3 2 7 7 C 1.37876 * 120.00134 * 294.33127 * 5 3 2 8 8 N 1.31521 * 119.99747 * 0.92507 * 7 5 3 9 9 Si 1.86793 * 120.00153 * 180.92740 * 7 5 3 10 10 H 1.48503 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46995 * 119.99879 * 9 7 5 12 12 H 1.48495 * 109.47270 * 239.99886 * 9 7 5 13 13 N 1.46899 * 109.46831 * 273.22253 * 3 2 1 14 14 C 1.46909 * 110.99819 * 86.59537 * 13 3 2 15 15 C 1.52997 * 115.54982 * 50.88594 * 14 13 3 16 16 C 1.50702 * 109.46949 * 60.86483 * 15 14 13 17 17 C 1.38165 * 120.02973 * 258.03813 * 16 15 14 18 18 C 1.38243 * 120.05663 * 179.97438 * 17 16 15 19 19 C 1.38290 * 120.11268 * 0.04213 * 18 17 16 20 20 C 1.38124 * 120.05241 * 359.97438 * 19 18 17 21 21 C 1.38712 * 120.02692 * 78.02365 * 16 15 14 22 22 O 1.35906 * 120.05627 * 0.03817 * 21 16 15 23 23 C 1.42901 * 116.99694 * 180.02562 * 22 21 16 24 24 C 1.52995 * 117.49523 * 196.55915 * 14 13 3 25 25 C 1.53002 * 117.49450 * 265.21628 * 14 13 3 26 26 H 1.09002 * 109.47435 * 302.19881 * 1 2 3 27 27 H 1.09004 * 109.47078 * 62.19791 * 1 2 3 28 28 H 1.09001 * 109.47296 * 182.19288 * 1 2 3 29 29 H 1.09000 * 109.47332 * 240.00024 * 2 1 3 30 30 H 1.08999 * 109.47202 * 119.99628 * 2 1 3 31 31 H 0.97003 * 119.99630 * 180.02562 * 8 7 5 32 32 H 1.00908 * 110.99954 * 210.54362 * 13 3 2 33 33 H 1.09005 * 109.47452 * 300.86406 * 15 14 13 34 34 H 1.08996 * 109.47026 * 180.86494 * 15 14 13 35 35 H 1.08000 * 119.97104 * 359.97438 * 17 16 15 36 36 H 1.08000 * 119.94266 * 180.02562 * 18 17 16 37 37 H 1.07997 * 119.97383 * 179.70488 * 19 18 17 38 38 H 1.08003 * 120.02521 * 179.97438 * 20 19 18 39 39 H 1.08995 * 109.47046 * 60.00624 * 23 22 21 40 40 H 1.09004 * 109.46368 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47007 * 299.99671 * 23 22 21 42 42 H 1.09002 * 117.49652 * 215.00239 * 24 14 13 43 43 H 1.09003 * 117.50336 * 0.02562 * 24 14 13 44 44 H 1.09001 * 117.49981 * 359.97438 * 25 14 13 45 45 H 1.08994 * 117.49503 * 144.97078 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3505 2.0716 0.5630 5 6 3.4034 1.4933 0.6401 6 1 4.2668 1.7643 0.0506 7 6 3.5484 1.1939 1.9781 8 7 2.4996 0.8462 2.6915 9 14 5.2343 1.2820 2.7776 10 1 6.2405 1.6952 1.7666 11 1 5.2070 2.2740 3.8823 12 1 5.5955 -0.0525 3.3195 13 7 2.1298 1.9301 -1.3828 14 6 0.8461 2.4886 -1.8285 15 6 0.2155 3.5217 -0.8927 16 6 1.1438 4.6999 -0.7467 17 6 1.9196 4.8324 0.3888 18 6 2.7717 5.9126 0.5231 19 6 2.8493 6.8637 -0.4778 20 6 2.0755 6.7360 -1.6148 21 6 1.2202 5.6522 -1.7524 22 8 0.4577 5.5244 -2.8702 23 6 0.5887 6.5423 -3.8646 24 6 0.6439 2.6813 -3.3327 25 6 -0.0982 1.5624 -2.5975 26 1 -0.3634 0.5476 0.8696 27 1 -0.3633 0.4793 -0.9091 28 1 -0.3634 -1.0269 0.0393 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.6016 0.6359 3.6330 32 1 2.8718 2.6069 -1.4801 33 1 0.0448 3.0704 0.0847 34 1 -0.7344 3.8570 -1.3090 35 1 1.8603 4.0913 1.1722 36 1 3.3776 6.0141 1.4113 37 1 3.5122 7.7092 -0.3685 38 1 2.1361 7.4792 -2.3961 39 1 1.6199 6.5765 -4.2159 40 1 -0.0728 6.3194 -4.7018 41 1 0.3189 7.5069 -3.4348 42 1 0.0615 3.5442 -3.6557 43 1 1.4630 2.3933 -3.9917 44 1 0.2331 0.5389 -2.7731 45 1 -1.1688 1.6889 -2.4364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:52 Heat of formation + Delta-G solvation = -2.859859 kcal Electronic energy + Delta-G solvation = -24575.322648 eV Core-core repulsion = 21365.187247 eV Total energy + Delta-G solvation = -3210.135400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.28324 -39.44697 -38.11024 -36.26653 -33.56895 -33.26718 -31.79502 -30.92977 -28.44059 -27.96796 -27.45500 -24.54779 -23.47312 -22.89988 -22.58243 -21.55642 -19.74329 -18.79979 -18.47625 -17.24445 -16.76097 -16.64160 -16.49411 -16.13738 -15.60915 -15.32313 -15.21223 -14.63793 -14.52421 -14.10679 -14.01437 -13.79809 -13.56383 -13.20501 -13.08555 -12.93689 -12.76674 -12.72370 -12.47406 -12.22978 -12.13819 -12.01059 -11.86806 -11.76753 -11.57389 -11.35482 -10.96780 -10.68622 -10.46522 -10.19634 -9.72966 -9.08952 -8.76069 -8.06879 -6.16193 0.47543 0.59377 1.37830 1.41296 1.51255 2.44024 2.48757 2.88220 3.11410 3.23648 3.61531 3.89459 3.97412 4.11467 4.17345 4.32940 4.38313 4.46485 4.50544 4.60085 4.60916 4.67070 4.76251 4.79551 4.82331 4.88205 4.89686 5.00204 5.01193 5.07110 5.20613 5.20664 5.38231 5.43677 5.44844 5.54425 5.59840 5.64020 5.72578 5.75800 5.81879 5.97133 6.05887 6.35732 6.58330 6.60028 6.97791 7.12605 7.52567 8.99375 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.006949 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.944083 B = 4028.651856 C = 5426.841628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C 0.229 3.771 4 H 0.001 0.999 5 C -0.523 4.523 6 H 0.045 0.955 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.650 5.650 14 C 0.042 3.958 15 C -0.052 4.052 16 C -0.120 4.120 17 C -0.080 4.080 18 C -0.170 4.170 19 C -0.085 4.085 20 C -0.211 4.211 21 C 0.130 3.870 22 O -0.319 6.319 23 C 0.017 3.983 24 C -0.145 4.145 25 C -0.162 4.162 26 H 0.024 0.976 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.030 0.970 30 H 0.038 0.962 31 H 0.258 0.742 32 H 0.324 0.676 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.060 0.940 40 H 0.118 0.882 41 H 0.063 0.937 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.668 12.524 -11.621 17.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C 0.121 3.879 4 H 0.019 0.981 5 C -0.562 4.562 6 H 0.064 0.936 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.279 5.279 14 C -0.051 4.051 15 C -0.091 4.091 16 C -0.121 4.121 17 C -0.098 4.098 18 C -0.188 4.188 19 C -0.103 4.103 20 C -0.230 4.230 21 C 0.084 3.916 22 O -0.233 6.233 23 C -0.077 4.077 24 C -0.182 4.182 25 C -0.199 4.199 26 H 0.043 0.957 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.142 0.858 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.140 0.860 37 H 0.168 0.832 38 H 0.172 0.828 39 H 0.079 0.921 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.132 0.868 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.959 11.690 -11.779 17.320 hybrid contribution 1.158 0.519 1.671 2.098 sum -3.800 12.209 -10.108 16.299 Atomic orbital electron populations 1.21995 0.97088 0.99855 1.01317 1.21327 0.94223 0.99214 0.98298 1.18927 0.94177 0.91516 0.83296 0.98126 1.21570 0.94414 1.45748 0.94446 0.93645 1.25494 0.99242 0.95243 0.97796 1.70090 1.30208 1.47139 1.07647 0.85737 0.81367 0.77449 0.78467 1.19579 1.20715 1.21055 1.60615 1.03120 1.39030 1.25166 1.21333 0.93133 0.97592 0.93023 1.20274 0.96978 0.92347 0.99493 1.19145 1.01847 0.97034 0.94037 1.20962 0.95105 0.97046 0.96720 1.21184 1.00864 0.95791 1.00950 1.21179 0.98038 0.98622 0.92416 1.21451 1.00677 0.99648 1.01212 1.18788 0.91906 0.93986 0.86887 1.86085 1.60963 1.49336 1.26898 1.23314 1.03423 0.90678 0.90324 1.23121 1.02344 1.00123 0.92610 1.23033 0.97251 0.95917 1.03710 0.95659 0.90427 0.94136 0.95110 0.94286 0.93271 0.85812 0.93234 0.90311 0.88303 0.85965 0.83231 0.82772 0.92100 0.86411 0.91819 0.86838 0.89606 0.89445 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.21 9.59 71.98 0.69 -5.52 16 2 C -0.09 -4.55 5.49 30.59 0.17 -4.38 16 3 C 0.23 11.40 1.98 44.17 0.09 11.49 16 4 H 0.00 0.07 4.20 -2.39 -0.01 0.06 16 5 C -0.52 -28.74 8.47 25.60 0.22 -28.52 16 6 H 0.05 2.54 7.65 -2.91 -0.02 2.51 16 7 C 0.02 1.19 5.13 84.65 0.43 1.63 16 8 N -0.91 -52.55 11.92 21.45 0.26 -52.29 16 9 Si 0.94 44.29 29.54 68.60 2.03 46.32 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 N -0.65 -28.17 6.29 -452.08 -2.85 -31.01 16 14 C 0.04 1.50 1.31 3.52 0.00 1.51 16 15 C -0.05 -1.89 4.40 29.85 0.13 -1.76 16 16 C -0.12 -4.27 4.83 -19.77 -0.10 -4.36 16 17 C -0.08 -3.10 9.52 22.25 0.21 -2.89 16 18 C -0.17 -5.58 10.04 22.28 0.22 -5.36 16 19 C -0.08 -2.22 10.04 22.26 0.22 -2.00 16 20 C -0.21 -5.29 9.04 22.37 0.20 -5.08 16 21 C 0.13 3.82 6.64 22.51 0.15 3.97 16 22 O -0.32 -7.94 7.07 -92.49 -0.65 -8.59 16 23 C 0.02 0.26 9.81 113.37 1.11 1.37 16 24 C -0.14 -4.31 9.49 30.62 0.29 -4.02 16 25 C -0.16 -5.10 7.20 30.62 0.22 -4.88 16 26 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 27 H 0.08 2.95 3.66 -2.38 -0.01 2.94 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 30 H 0.04 2.18 6.37 -2.39 -0.02 2.17 16 31 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.32 14.68 8.09 -89.69 -0.73 13.95 16 33 H 0.05 2.10 6.15 -2.38 -0.01 2.09 16 34 H 0.08 2.58 7.88 -2.39 -0.02 2.56 16 35 H 0.10 4.58 7.20 -2.91 -0.02 4.56 16 36 H 0.12 3.79 8.06 -2.91 -0.02 3.76 16 37 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.15 2.74 6.30 -2.91 -0.02 2.72 16 39 H 0.06 0.83 7.67 -2.39 -0.02 0.82 16 40 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 42 H 0.11 3.01 6.13 -2.39 -0.01 2.99 16 43 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.09 2.93 7.83 -2.39 -0.02 2.91 16 45 H 0.10 2.81 8.12 -2.39 -0.02 2.79 16 Total: -1.00 -62.39 349.01 3.32 -59.07 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.26 Total: 35.31 kcal Atomic # 6 Polarization: -53.08 SS G_CDS: 4.27 Total: -48.81 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -2.59 Total: -83.30 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.65 Total: -8.59 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -62.39 3.32 -59.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.214 kcal (2) G-P(sol) polarization free energy of solvation -62.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds