Wall clock time and date at job start Tue Mar 31 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47287 * 2 1 4 4 H 1.08994 * 109.46877 * 320.19190 * 3 2 1 5 5 C 1.50696 * 109.47397 * 200.18944 * 3 2 1 6 6 H 1.07999 * 120.00166 * 250.71158 * 5 3 2 7 7 C 1.37872 * 120.00153 * 70.70800 * 5 3 2 8 8 N 1.31515 * 120.00073 * 16.92864 * 7 5 3 9 9 Si 1.86803 * 120.00315 * 196.92810 * 7 5 3 10 10 H 1.48497 * 109.46960 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47208 * 120.00072 * 9 7 5 12 12 H 1.48501 * 109.46831 * 239.99953 * 9 7 5 13 13 N 1.46904 * 109.46931 * 80.19071 * 3 2 1 14 14 C 1.46898 * 110.99793 * 268.94686 * 13 3 2 15 15 C 1.52996 * 115.55287 * 324.11764 * 14 13 3 16 16 C 1.50703 * 109.46886 * 306.18771 * 15 14 13 17 17 C 1.38166 * 120.02941 * 307.40089 * 16 15 14 18 18 C 1.38246 * 120.05754 * 179.76624 * 17 16 15 19 19 C 1.38291 * 120.10866 * 0.51256 * 18 17 16 20 20 C 1.38125 * 120.05455 * 359.74704 * 19 18 17 21 21 C 1.38720 * 120.02870 * 127.68047 * 16 15 14 22 22 O 1.35894 * 120.05403 * 359.97438 * 21 16 15 23 23 C 1.42901 * 117.00082 * 188.55884 * 22 21 16 24 24 C 1.53003 * 117.49981 * 178.44678 * 14 13 3 25 25 C 1.53005 * 117.49981 * 109.78418 * 14 13 3 26 26 H 1.08995 * 109.47587 * 57.31024 * 1 2 3 27 27 H 1.09002 * 109.46989 * 177.31450 * 1 2 3 28 28 H 1.09008 * 109.47116 * 297.30629 * 1 2 3 29 29 H 1.09001 * 109.47155 * 240.00283 * 2 1 3 30 30 H 1.09002 * 109.47657 * 119.99966 * 2 1 3 31 31 H 0.96992 * 120.00598 * 180.02562 * 8 7 5 32 32 H 1.00902 * 111.00073 * 32.89814 * 13 3 2 33 33 H 1.09004 * 109.47417 * 66.18303 * 15 14 13 34 34 H 1.09002 * 109.47561 * 186.18752 * 15 14 13 35 35 H 1.08002 * 119.97268 * 0.02718 * 17 16 15 36 36 H 1.07999 * 119.94084 * 180.25567 * 18 17 16 37 37 H 1.07999 * 119.96918 * 179.76389 * 19 18 17 38 38 H 1.07998 * 120.02188 * 180.02562 * 20 19 18 39 39 H 1.08992 * 109.47530 * 194.50196 * 23 22 21 40 40 H 1.09001 * 109.46938 * 314.50171 * 23 22 21 41 41 H 1.09006 * 109.46807 * 74.49741 * 23 22 21 42 42 H 1.08997 * 117.49784 * 359.97438 * 24 14 13 43 43 H 1.08998 * 117.50236 * 145.02006 * 24 14 13 44 44 H 1.09003 * 117.50137 * 214.97789 * 25 14 13 45 45 H 1.09003 * 117.49374 * 359.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4168 2.0482 -0.6579 5 6 3.4646 1.4717 -0.4903 6 1 4.2684 1.6874 0.1980 7 6 3.7421 1.2229 -1.8177 8 7 2.7819 1.2898 -2.7140 9 14 5.4818 0.7906 -2.3433 10 1 6.3701 0.7802 -1.1534 11 1 5.4882 -0.5524 -2.9771 12 1 5.9697 1.7999 -3.3173 13 7 1.9807 1.9828 1.3648 14 6 0.6949 2.6488 1.6119 15 6 0.1012 3.4008 0.4192 16 6 1.1189 4.3737 -0.1183 17 6 1.7278 5.2772 0.7313 18 6 2.6650 6.1667 0.2398 19 6 2.9878 6.1617 -1.1049 20 6 2.3780 5.2640 -1.9594 21 6 1.4410 4.3667 -1.4676 22 8 0.8397 3.4825 -2.3062 23 6 1.3506 3.4015 -3.6384 24 6 0.4595 3.2356 3.0052 25 6 -0.2805 1.9670 2.5736 26 1 -0.3634 0.5550 -0.8648 27 1 -0.3633 -1.0266 -0.0482 28 1 -0.3634 0.4715 0.9132 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.9770 1.1145 -3.6478 32 1 2.1505 1.2597 2.0477 33 1 -0.1687 2.6892 -0.3613 34 1 -0.7880 3.9445 0.7384 35 1 1.4744 5.2858 1.7812 36 1 3.1428 6.8694 0.9064 37 1 3.7175 6.8601 -1.4872 38 1 2.6308 5.2603 -3.0093 39 1 0.6402 2.8659 -4.2680 40 1 1.4992 4.4069 -4.0322 41 1 2.3022 2.8699 -3.6308 42 1 1.2586 3.1272 3.7385 43 1 -0.1185 4.1573 3.0721 44 1 -1.3451 2.0546 2.3567 45 1 0.0318 1.0241 3.0225 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:54 Heat of formation + Delta-G solvation = 11.128293 kcal Electronic energy + Delta-G solvation = -25382.669497 eV Core-core repulsion = 22173.140668 eV Total energy + Delta-G solvation = -3209.528829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10942 -39.46021 -37.80738 -36.22954 -33.72603 -33.10892 -31.39958 -30.67939 -28.52295 -27.73637 -27.39180 -24.44021 -23.38213 -22.64986 -22.34107 -21.63434 -19.99491 -18.53858 -18.32008 -17.03609 -16.78031 -16.54240 -16.12934 -15.79174 -15.71993 -15.13173 -15.10049 -14.66685 -14.34272 -14.13861 -13.78461 -13.67200 -13.33961 -13.09431 -12.84787 -12.79101 -12.67261 -12.52074 -12.45370 -12.28003 -12.15947 -11.99867 -11.88265 -11.64542 -11.51849 -11.38985 -11.05996 -10.76081 -10.56114 -9.96571 -9.41769 -8.61866 -8.52321 -7.89592 -5.86571 0.71527 0.88999 1.38089 1.44329 1.52430 2.52684 2.85038 3.08057 3.20060 3.28293 3.72106 4.00890 4.04246 4.15428 4.26475 4.30057 4.42397 4.51532 4.54478 4.63332 4.72059 4.78115 4.83988 4.84465 4.87895 4.90676 5.02065 5.07811 5.13747 5.14467 5.20640 5.40048 5.41786 5.47313 5.50220 5.53606 5.68425 5.74091 5.81349 5.90507 5.95256 6.02223 6.24276 6.47363 6.92826 6.95972 7.09075 7.19365 7.70617 9.10143 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012117 B = 0.009507 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.325496 B = 2944.427827 C = 3959.479039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.196 3.804 4 H 0.090 0.910 5 C -0.497 4.497 6 H 0.028 0.972 7 C 0.034 3.966 8 N -0.874 5.874 9 Si 0.915 3.085 10 H -0.285 1.285 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.648 5.648 14 C 0.065 3.935 15 C -0.032 4.032 16 C -0.108 4.108 17 C -0.072 4.072 18 C -0.175 4.175 19 C -0.097 4.097 20 C -0.230 4.230 21 C 0.144 3.856 22 O -0.312 6.312 23 C 0.025 3.975 24 C -0.165 4.165 25 C -0.214 4.214 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.255 0.745 32 H 0.322 0.678 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 6.530 4.578 10.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.088 3.912 4 H 0.107 0.893 5 C -0.536 4.536 6 H 0.047 0.953 7 C -0.165 4.165 8 N -0.514 5.514 9 Si 0.744 3.256 10 H -0.211 1.211 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.276 5.276 14 C -0.028 4.028 15 C -0.069 4.069 16 C -0.109 4.109 17 C -0.090 4.090 18 C -0.193 4.193 19 C -0.115 4.115 20 C -0.249 4.249 21 C 0.098 3.902 22 O -0.224 6.224 23 C -0.070 4.070 24 C -0.202 4.202 25 C -0.254 4.254 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.139 0.861 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.152 0.848 38 H 0.138 0.862 39 H 0.103 0.897 40 H 0.057 0.943 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.126 0.874 44 H 0.118 0.882 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.065 6.942 4.223 10.139 hybrid contribution 1.019 -1.429 -0.807 1.931 sum -5.046 5.514 3.416 8.218 Atomic orbital electron populations 1.21883 0.96495 1.00173 1.01472 1.22175 0.94856 1.01456 0.98535 1.19589 0.95794 0.89845 0.85940 0.89296 1.21235 0.93441 1.45719 0.93224 0.95343 1.25167 0.98130 0.96529 0.96671 1.70144 1.32250 1.48219 1.00814 0.86201 0.84160 0.77675 0.77579 1.21071 1.21226 1.21371 1.60471 1.27935 1.33707 1.05438 1.21518 0.90220 1.00521 0.90571 1.19969 0.95475 0.95620 0.95877 1.19082 1.02387 0.99432 0.89957 1.20898 0.95296 0.93586 0.99172 1.21149 1.00649 1.01920 0.95581 1.21051 0.98613 0.97970 0.93870 1.21271 1.02322 1.00493 1.00809 1.18954 0.92450 0.88199 0.90586 1.85922 1.55728 1.57225 1.23561 1.23448 1.03658 0.99833 0.80052 1.23227 1.02482 0.97309 0.97232 1.23646 0.98956 0.96781 1.05990 0.94676 0.93780 0.91235 0.95101 0.95016 0.93492 0.86076 0.91771 0.89745 0.84673 0.84372 0.84763 0.86246 0.89699 0.94252 0.89526 0.88979 0.87350 0.88206 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 8.96 71.98 0.64 -4.81 16 2 C -0.13 -5.84 5.56 30.59 0.17 -5.67 16 3 C 0.20 9.18 1.52 44.17 0.07 9.25 16 4 H 0.09 4.30 2.24 -2.39 -0.01 4.29 16 5 C -0.50 -26.82 8.65 25.60 0.22 -26.60 16 6 H 0.03 1.64 7.87 -2.91 -0.02 1.62 16 7 C 0.03 1.79 4.90 84.65 0.41 2.21 16 8 N -0.87 -44.99 9.32 21.45 0.20 -44.79 16 9 Si 0.92 43.38 29.57 68.60 2.03 45.41 16 10 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 13 N -0.65 -26.47 6.30 -452.09 -2.85 -29.31 16 14 C 0.06 2.16 0.95 3.53 0.00 2.16 16 15 C -0.03 -1.14 4.68 29.85 0.14 -1.00 16 16 C -0.11 -4.17 4.43 -19.77 -0.09 -4.26 16 17 C -0.07 -2.47 9.23 22.25 0.21 -2.27 16 18 C -0.17 -5.70 10.04 22.28 0.22 -5.48 16 19 C -0.10 -3.32 10.04 22.26 0.22 -3.10 16 20 C -0.23 -8.99 9.07 22.36 0.20 -8.79 16 21 C 0.14 6.04 6.00 22.51 0.14 6.17 16 22 O -0.31 -13.54 7.95 -92.36 -0.73 -14.28 16 23 C 0.02 0.96 9.55 113.37 1.08 2.05 16 24 C -0.16 -4.36 8.95 30.62 0.27 -4.09 16 25 C -0.21 -5.84 7.62 30.62 0.23 -5.61 16 26 H 0.03 1.43 7.50 -2.39 -0.02 1.41 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 2.36 4.69 -2.38 -0.01 2.35 16 29 H 0.03 1.55 7.45 -2.39 -0.02 1.54 16 30 H 0.03 1.35 7.66 -2.39 -0.02 1.33 16 31 H 0.25 12.61 7.79 -92.71 -0.72 11.88 16 32 H 0.32 12.67 7.89 -89.69 -0.71 11.97 16 33 H 0.06 2.62 4.62 -2.38 -0.01 2.61 16 34 H 0.08 2.54 8.08 -2.39 -0.02 2.52 16 35 H 0.14 4.04 6.70 -2.91 -0.02 4.02 16 36 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 37 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.12 4.43 6.00 -2.91 -0.02 4.41 16 39 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.04 1.34 6.34 -2.39 -0.02 1.32 16 41 H 0.09 3.86 4.61 -2.38 -0.01 3.85 16 42 H 0.09 2.42 8.14 -2.39 -0.02 2.41 16 43 H 0.11 2.44 8.08 -2.39 -0.02 2.43 16 44 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.09 2.41 8.07 -2.39 -0.02 2.39 16 Total: -1.00 -57.99 338.88 3.14 -54.85 By element: Atomic # 1 Polarization: 37.63 SS G_CDS: 0.34 Total: 37.97 kcal Atomic # 6 Polarization: -54.00 SS G_CDS: 4.15 Total: -49.85 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -2.65 Total: -74.10 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.73 Total: -14.28 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -57.99 3.14 -54.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.976 kcal (2) G-P(sol) polarization free energy of solvation -57.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds