Wall clock time and date at job start Tue Mar 31 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47114 * 2 1 4 4 H 1.08992 * 109.47245 * 316.61909 * 3 2 1 5 5 C 1.50706 * 109.47019 * 196.61694 * 3 2 1 6 6 H 1.07997 * 119.99936 * 241.76558 * 5 3 2 7 7 C 1.37876 * 119.99750 * 61.76760 * 5 3 2 8 8 N 1.31518 * 119.99856 * 193.20254 * 7 5 3 9 9 Si 1.86797 * 120.00086 * 13.20745 * 7 5 3 10 10 H 1.48495 * 109.47475 * 91.31954 * 9 7 5 11 11 H 1.48504 * 109.46844 * 211.31736 * 9 7 5 12 12 H 1.48499 * 109.47181 * 331.31484 * 9 7 5 13 13 N 1.46897 * 109.46628 * 76.62230 * 3 2 1 14 14 C 1.46906 * 110.99682 * 249.10668 * 13 3 2 15 15 C 1.52998 * 115.55242 * 321.12065 * 14 13 3 16 16 C 1.50698 * 109.47071 * 301.50865 * 15 14 13 17 17 C 1.38293 * 119.97504 * 95.74790 * 16 15 14 18 18 C 1.38243 * 120.11125 * 179.97438 * 17 16 15 19 19 C 1.38167 * 120.05592 * 359.95214 * 18 17 16 20 20 C 1.38703 * 119.94469 * 0.02562 * 19 18 17 21 21 O 1.35902 * 120.05618 * 180.02562 * 20 19 18 22 22 C 1.42900 * 117.00007 * 5.00588 * 21 20 19 23 23 C 1.38116 * 119.97047 * 275.46544 * 16 15 14 24 24 C 1.53002 * 117.49661 * 175.45115 * 14 13 3 25 25 C 1.52998 * 117.49616 * 106.79326 * 14 13 3 26 26 H 1.09000 * 109.46990 * 179.16713 * 1 2 3 27 27 H 1.08994 * 109.46518 * 299.16889 * 1 2 3 28 28 H 1.09001 * 109.46667 * 59.16894 * 1 2 3 29 29 H 1.09006 * 109.46863 * 240.00561 * 2 1 3 30 30 H 1.08993 * 109.47310 * 120.00687 * 2 1 3 31 31 H 0.96995 * 119.99795 * 179.97438 * 8 7 5 32 32 H 1.00909 * 111.00358 * 125.16025 * 13 3 2 33 33 H 1.09004 * 109.46767 * 61.50760 * 15 14 13 34 34 H 1.08999 * 109.47177 * 181.50367 * 15 14 13 35 35 H 1.08001 * 119.94298 * 359.97190 * 17 16 15 36 36 H 1.08005 * 119.96980 * 179.97438 * 18 17 16 37 37 H 1.07994 * 120.02276 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46933 * 304.27752 * 22 21 20 39 39 H 1.08999 * 109.47195 * 64.27363 * 22 21 20 40 40 H 1.08998 * 109.47425 * 184.27341 * 22 21 20 41 41 H 1.08002 * 120.03071 * 0.02562 * 23 16 15 42 42 H 1.08996 * 117.49998 * 0.02562 * 24 14 13 43 43 H 1.09008 * 117.49783 * 145.02478 * 24 14 13 44 44 H 1.08997 * 117.49776 * 214.98073 * 25 14 13 45 45 H 1.09001 * 117.49906 * 359.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4570 2.0340 -0.7058 5 6 3.4912 1.4622 -0.4063 6 1 4.2391 1.8312 0.2798 7 6 3.8638 1.0093 -1.6541 8 7 5.1316 0.7805 -1.9190 9 14 2.5682 0.7208 -2.9684 10 1 2.3954 1.9568 -3.7730 11 1 3.0005 -0.3900 -3.8542 12 1 1.2787 0.3660 -2.3229 13 7 1.9011 2.0108 1.3474 14 6 0.8653 3.0522 1.3752 15 6 0.8147 3.9656 0.1488 16 6 2.1448 4.6536 -0.0203 17 6 3.0909 4.1266 -0.8802 18 6 4.3118 4.7557 -1.0379 19 6 4.5892 5.9136 -0.3370 20 6 3.6418 6.4445 0.5258 21 8 3.9120 7.5836 1.2159 22 6 5.1460 8.2421 0.9232 23 6 2.4156 5.8133 0.6794 24 6 0.5222 3.6712 2.7317 25 6 -0.4611 2.7113 2.0573 26 1 -0.3633 -1.0276 -0.0149 27 1 -0.3632 0.5009 0.8973 28 1 -0.3633 0.5267 -0.8825 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 5.3937 0.4616 -2.7967 32 1 2.7832 2.3693 1.6815 33 1 0.5979 3.3708 -0.7385 34 1 0.0335 4.7134 0.2847 35 1 2.8757 3.2220 -1.4296 36 1 5.0492 4.3419 -1.7098 37 1 5.5429 6.4049 -0.4609 38 1 5.9719 7.5442 1.0611 39 1 5.1350 8.5926 -0.1088 40 1 5.2725 9.0918 1.5941 41 1 1.6749 6.2268 1.3477 42 1 1.0652 3.3061 3.6034 43 1 0.2599 4.7291 2.7503 44 1 -1.3697 3.1379 1.6325 45 1 -0.5653 1.7141 2.4850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:59 Heat of formation + Delta-G solvation = 22.358294 kcal Electronic energy + Delta-G solvation = -24495.810189 eV Core-core repulsion = 21286.768330 eV Total energy + Delta-G solvation = -3209.041859 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.83482 -38.57209 -36.58322 -34.98176 -32.02187 -31.61612 -30.44647 -29.75116 -27.25808 -26.60937 -26.22485 -22.57438 -22.20242 -21.85091 -20.89321 -20.00377 -18.57153 -17.24398 -16.97596 -15.80492 -15.53255 -15.47226 -15.16799 -15.07837 -14.21341 -13.69138 -13.50561 -13.45503 -12.96697 -12.78675 -12.66292 -12.61178 -12.14818 -12.04486 -11.82984 -11.48274 -11.44291 -11.12201 -10.99167 -10.80069 -10.63192 -10.59009 -10.39543 -10.18494 -9.96656 -9.72696 -9.38625 -9.16448 -9.04433 -8.48201 -8.29632 -7.60892 -7.36217 -6.18259 -4.07905 1.88259 2.12329 3.20161 3.32245 3.37039 3.57373 4.21833 4.33260 4.40786 4.87559 5.13263 5.15335 5.21891 5.26150 5.28818 5.38400 5.43042 5.53472 5.60762 5.79082 5.95101 6.00383 6.04268 6.07504 6.11084 6.17836 6.18204 6.23402 6.31068 6.35510 6.43641 6.57971 6.65799 6.78325 6.84800 6.86624 7.08584 7.11351 7.23368 7.36407 7.40478 7.48795 7.60825 7.87482 8.04661 8.34987 8.59545 8.91970 9.44978 10.93580 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.007379 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.386251 B = 3793.780203 C = 5233.870684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C 0.182 3.818 4 H 0.024 0.976 5 C -0.518 4.518 6 H 0.076 0.924 7 C 0.079 3.921 8 N -0.886 5.886 9 Si 0.840 3.160 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.240 1.240 13 N -0.642 5.642 14 C 0.061 3.939 15 C -0.068 4.068 16 C -0.055 4.055 17 C -0.106 4.106 18 C -0.076 4.076 19 C -0.211 4.211 20 C 0.100 3.900 21 O -0.326 6.326 22 C 0.031 3.969 23 C -0.146 4.146 24 C -0.175 4.175 25 C -0.167 4.167 26 H 0.031 0.969 27 H 0.057 0.943 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.263 0.737 32 H 0.343 0.657 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.155 0.845 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 9.699 3.768 11.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C 0.073 3.927 4 H 0.041 0.959 5 C -0.556 4.556 6 H 0.094 0.906 7 C -0.125 4.125 8 N -0.522 5.522 9 Si 0.666 3.334 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.163 1.163 13 N -0.272 5.272 14 C -0.032 4.032 15 C -0.107 4.107 16 C -0.055 4.055 17 C -0.124 4.124 18 C -0.094 4.094 19 C -0.230 4.230 20 C 0.056 3.944 21 O -0.240 6.240 22 C -0.064 4.064 23 C -0.164 4.164 24 C -0.213 4.213 25 C -0.205 4.205 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.172 0.828 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.135 0.865 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.099 9.210 3.999 11.748 hybrid contribution 0.397 0.424 -1.413 1.528 sum -5.703 9.634 2.586 11.490 Atomic orbital electron populations 1.21913 0.98591 0.99350 1.00950 1.21900 0.92832 0.99447 1.00545 1.19724 0.96136 0.91197 0.85656 0.95885 1.21329 0.91304 1.42253 1.00718 0.90567 1.24851 0.94759 0.94452 0.98400 1.69960 1.15925 1.44152 1.22194 0.87622 0.84791 0.78416 0.82569 1.20535 1.21316 1.16316 1.60518 1.09823 1.30104 1.26782 1.21385 0.95862 0.94363 0.91542 1.20577 0.93925 0.97148 0.99055 1.19482 0.96046 0.93738 0.96253 1.21838 0.92743 0.98972 0.98808 1.20936 0.97145 0.93307 0.98027 1.21143 0.99278 1.00269 1.02275 1.18824 0.94620 0.87026 0.93915 1.85996 1.39532 1.36984 1.61488 1.22928 0.85480 0.96750 1.01290 1.20081 0.95218 0.97442 1.03705 1.23041 1.03901 0.97793 0.96562 1.23104 0.93013 1.00236 1.04160 0.94944 0.92369 0.94346 0.93105 0.92671 0.92675 0.83741 0.90038 0.91471 0.82782 0.86095 0.86597 0.92854 0.93169 0.88978 0.86480 0.88886 0.89551 0.89769 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.59 37.16 0.36 -2.39 16 2 C -0.11 -2.31 4.64 -26.73 -0.12 -2.43 16 3 C 0.18 3.89 0.71 -68.86 -0.05 3.84 16 4 H 0.02 0.51 2.93 -51.93 -0.15 0.36 16 5 C -0.52 -12.90 5.79 -34.44 -0.20 -13.10 16 6 H 0.08 2.13 7.59 -52.49 -0.40 1.73 16 7 C 0.08 2.05 4.79 -17.82 -0.09 1.97 16 8 N -0.89 -24.96 13.96 55.43 0.77 -24.19 16 9 Si 0.84 19.53 24.67 -169.99 -4.19 15.34 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.24 -5.25 4.61 56.52 0.26 -4.99 16 13 N -0.64 -12.50 6.39 -94.25 -0.60 -13.10 16 14 C 0.06 1.02 2.06 -131.60 -0.27 0.75 16 15 C -0.07 -1.14 4.69 -27.88 -0.13 -1.27 16 16 C -0.05 -1.00 4.89 -104.65 -0.51 -1.51 16 17 C -0.11 -2.15 7.18 -39.56 -0.28 -2.44 16 18 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 19 C -0.21 -3.66 9.07 -39.44 -0.36 -4.01 16 20 C 0.10 1.72 6.68 -39.22 -0.26 1.46 16 21 O -0.33 -5.05 10.50 -19.43 -0.20 -5.25 16 22 C 0.03 0.35 9.87 101.05 1.00 1.34 16 23 C -0.15 -2.51 9.66 -39.43 -0.38 -2.89 16 24 C -0.18 -2.53 10.17 -26.69 -0.27 -2.80 16 25 C -0.17 -2.42 8.97 -26.69 -0.24 -2.66 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.00 5.75 -51.93 -0.30 0.70 16 28 H 0.04 0.69 7.57 -51.93 -0.39 0.30 16 29 H 0.05 1.15 4.70 -51.93 -0.24 0.90 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.34 7.17 7.89 -39.29 -0.31 6.86 16 33 H 0.08 1.46 6.03 -51.93 -0.31 1.14 16 34 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 35 H 0.15 3.47 3.24 -52.49 -0.17 3.30 16 36 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 37 H 0.12 1.73 6.28 -52.49 -0.33 1.40 16 38 H 0.05 0.58 7.17 -51.93 -0.37 0.21 16 39 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.09 1.14 8.14 -51.92 -0.42 0.71 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.10 1.45 7.20 -51.93 -0.37 1.07 16 LS Contribution 338.92 15.07 5.11 5.11 Total: -1.00 -27.12 338.92 -8.18 -35.31 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -6.85 Total: 14.82 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -2.21 Total: -28.03 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.17 Total: -37.29 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.20 Total: -5.25 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.19 Total: 15.34 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.12 -8.18 -35.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.664 kcal (2) G-P(sol) polarization free energy of solvation -27.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds