Wall clock time and date at job start Tue Mar 31 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47114 * 2 1 4 4 H 1.08992 * 109.47245 * 316.61909 * 3 2 1 5 5 C 1.50706 * 109.47019 * 196.61694 * 3 2 1 6 6 H 1.07997 * 119.99936 * 241.76558 * 5 3 2 7 7 C 1.37876 * 119.99750 * 61.76760 * 5 3 2 8 8 N 1.31518 * 119.99856 * 193.20254 * 7 5 3 9 9 Si 1.86797 * 120.00086 * 13.20745 * 7 5 3 10 10 H 1.48495 * 109.47475 * 91.31954 * 9 7 5 11 11 H 1.48504 * 109.46844 * 211.31736 * 9 7 5 12 12 H 1.48499 * 109.47181 * 331.31484 * 9 7 5 13 13 N 1.46897 * 109.46628 * 76.62230 * 3 2 1 14 14 C 1.46906 * 110.99682 * 249.10668 * 13 3 2 15 15 C 1.52998 * 115.55242 * 321.12065 * 14 13 3 16 16 C 1.50698 * 109.47071 * 301.50865 * 15 14 13 17 17 C 1.38293 * 119.97504 * 95.74790 * 16 15 14 18 18 C 1.38243 * 120.11125 * 179.97438 * 17 16 15 19 19 C 1.38167 * 120.05592 * 359.95214 * 18 17 16 20 20 C 1.38703 * 119.94469 * 0.02562 * 19 18 17 21 21 O 1.35902 * 120.05618 * 180.02562 * 20 19 18 22 22 C 1.42900 * 117.00007 * 5.00588 * 21 20 19 23 23 C 1.38116 * 119.97047 * 275.46544 * 16 15 14 24 24 C 1.53002 * 117.49661 * 175.45115 * 14 13 3 25 25 C 1.52998 * 117.49616 * 106.79326 * 14 13 3 26 26 H 1.09000 * 109.46990 * 179.16713 * 1 2 3 27 27 H 1.08994 * 109.46518 * 299.16889 * 1 2 3 28 28 H 1.09001 * 109.46667 * 59.16894 * 1 2 3 29 29 H 1.09006 * 109.46863 * 240.00561 * 2 1 3 30 30 H 1.08993 * 109.47310 * 120.00687 * 2 1 3 31 31 H 0.96995 * 119.99795 * 179.97438 * 8 7 5 32 32 H 1.00909 * 111.00358 * 125.16025 * 13 3 2 33 33 H 1.09004 * 109.46767 * 61.50760 * 15 14 13 34 34 H 1.08999 * 109.47177 * 181.50367 * 15 14 13 35 35 H 1.08001 * 119.94298 * 359.97190 * 17 16 15 36 36 H 1.08005 * 119.96980 * 179.97438 * 18 17 16 37 37 H 1.07994 * 120.02276 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46933 * 304.27752 * 22 21 20 39 39 H 1.08999 * 109.47195 * 64.27363 * 22 21 20 40 40 H 1.08998 * 109.47425 * 184.27341 * 22 21 20 41 41 H 1.08002 * 120.03071 * 0.02562 * 23 16 15 42 42 H 1.08996 * 117.49998 * 0.02562 * 24 14 13 43 43 H 1.09008 * 117.49783 * 145.02478 * 24 14 13 44 44 H 1.08997 * 117.49776 * 214.98073 * 25 14 13 45 45 H 1.09001 * 117.49906 * 359.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4570 2.0340 -0.7058 5 6 3.4912 1.4622 -0.4063 6 1 4.2391 1.8312 0.2798 7 6 3.8638 1.0093 -1.6541 8 7 5.1316 0.7805 -1.9190 9 14 2.5682 0.7208 -2.9684 10 1 2.3954 1.9568 -3.7730 11 1 3.0005 -0.3900 -3.8542 12 1 1.2787 0.3660 -2.3229 13 7 1.9011 2.0108 1.3474 14 6 0.8653 3.0522 1.3752 15 6 0.8147 3.9656 0.1488 16 6 2.1448 4.6536 -0.0203 17 6 3.0909 4.1266 -0.8802 18 6 4.3118 4.7557 -1.0379 19 6 4.5892 5.9136 -0.3370 20 6 3.6418 6.4445 0.5258 21 8 3.9120 7.5836 1.2159 22 6 5.1460 8.2421 0.9232 23 6 2.4156 5.8133 0.6794 24 6 0.5222 3.6712 2.7317 25 6 -0.4611 2.7113 2.0573 26 1 -0.3633 -1.0276 -0.0149 27 1 -0.3632 0.5009 0.8973 28 1 -0.3633 0.5267 -0.8825 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 5.3937 0.4616 -2.7967 32 1 2.7832 2.3693 1.6815 33 1 0.5979 3.3708 -0.7385 34 1 0.0335 4.7134 0.2847 35 1 2.8757 3.2220 -1.4296 36 1 5.0492 4.3419 -1.7098 37 1 5.5429 6.4049 -0.4609 38 1 5.9719 7.5442 1.0611 39 1 5.1350 8.5926 -0.1088 40 1 5.2725 9.0918 1.5941 41 1 1.6749 6.2268 1.3477 42 1 1.0652 3.3061 3.6034 43 1 0.2599 4.7291 2.7503 44 1 -1.3697 3.1379 1.6325 45 1 -0.5653 1.7141 2.4850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:58 Heat of formation + Delta-G solvation = 6.012586 kcal Electronic energy + Delta-G solvation = -24496.518992 eV Core-core repulsion = 21286.768330 eV Total energy + Delta-G solvation = -3209.750662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17056 -39.88360 -37.90569 -36.59920 -33.95427 -32.97970 -31.93769 -31.10829 -28.69872 -28.05641 -27.52789 -24.29085 -23.50108 -23.15525 -22.21720 -21.61713 -19.98351 -18.90758 -18.46181 -17.12580 -17.08498 -16.79284 -16.59474 -16.42187 -15.54024 -15.32999 -14.97052 -14.83451 -14.63575 -14.31353 -14.14132 -13.98359 -13.74152 -13.38217 -13.07792 -12.96121 -12.71608 -12.62159 -12.46472 -12.35792 -12.17412 -11.88575 -11.83259 -11.73133 -11.51527 -11.17981 -11.03048 -10.98074 -10.50597 -10.38767 -9.71575 -9.04399 -8.86102 -8.23380 -6.13609 0.47124 0.68448 1.31405 1.39577 1.46345 2.37172 2.44060 2.88778 3.08874 3.13571 3.50648 3.92250 3.98864 4.05976 4.14941 4.27949 4.35800 4.41662 4.47677 4.53799 4.57888 4.61581 4.65343 4.69444 4.75449 4.80272 4.88491 4.93371 4.94225 5.00482 5.15562 5.18077 5.27253 5.30403 5.43165 5.44122 5.45208 5.54419 5.65802 5.77766 5.85923 5.92919 5.98513 6.19975 6.55135 6.56330 6.82416 6.96279 7.42368 8.92170 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.007379 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.386251 B = 3793.780203 C = 5233.870684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.191 3.809 4 H 0.028 0.972 5 C -0.496 4.496 6 H 0.034 0.966 7 C 0.033 3.967 8 N -0.936 5.936 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.214 1.214 13 N -0.642 5.642 14 C 0.033 3.967 15 C -0.064 4.064 16 C -0.052 4.052 17 C -0.132 4.132 18 C -0.096 4.096 19 C -0.212 4.212 20 C 0.105 3.895 21 O -0.332 6.332 22 C 0.020 3.980 23 C -0.147 4.147 24 C -0.161 4.161 25 C -0.150 4.150 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.101 0.899 37 H 0.137 0.863 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.123 0.877 41 H 0.141 0.859 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.572 11.502 5.143 15.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C 0.082 3.918 4 H 0.045 0.955 5 C -0.534 4.534 6 H 0.052 0.948 7 C -0.165 4.165 8 N -0.576 5.576 9 Si 0.714 3.286 10 H -0.205 1.205 11 H -0.223 1.223 12 H -0.137 1.137 13 N -0.271 5.271 14 C -0.059 4.059 15 C -0.103 4.103 16 C -0.052 4.052 17 C -0.150 4.150 18 C -0.114 4.114 19 C -0.231 4.231 20 C 0.060 3.940 21 O -0.246 6.246 22 C -0.074 4.074 23 C -0.165 4.165 24 C -0.198 4.198 25 C -0.188 4.188 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.146 0.854 36 H 0.119 0.881 37 H 0.155 0.845 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.141 0.859 41 H 0.159 0.841 42 H 0.107 0.893 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.979 11.026 5.393 15.208 hybrid contribution 1.368 0.005 -1.713 2.192 sum -7.611 11.031 3.680 13.898 Atomic orbital electron populations 1.21823 0.95659 1.00819 1.01679 1.21859 0.95464 0.98516 0.99227 1.19547 0.93456 0.91858 0.86951 0.95465 1.21394 0.92502 1.40047 0.99459 0.94779 1.25430 0.96023 0.94774 1.00273 1.70090 1.18051 1.46956 1.22530 0.86833 0.83823 0.77756 0.80220 1.20530 1.22324 1.13656 1.60502 1.09860 1.31619 1.25074 1.21495 0.96580 0.94842 0.93025 1.20578 0.93753 0.97571 0.98415 1.19612 0.96266 0.93977 0.95332 1.21663 0.93975 0.99028 1.00328 1.20891 0.96915 0.94698 0.98944 1.21279 1.00485 0.99435 1.01888 1.18950 0.94405 0.87441 0.93161 1.85995 1.41485 1.36086 1.61083 1.23274 0.83814 0.97403 1.02927 1.20321 0.95801 0.96873 1.03536 1.23110 1.02985 0.99014 0.94720 1.23176 0.92688 1.00323 1.02617 0.93158 0.91129 0.94072 0.94841 0.93698 0.93078 0.85306 0.91544 0.88392 0.85448 0.88099 0.84480 0.92702 0.92161 0.85850 0.84150 0.89269 0.87451 0.87340 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.59 71.98 0.69 -4.11 16 2 C -0.11 -4.67 4.64 30.60 0.14 -4.53 16 3 C 0.19 8.22 0.71 44.17 0.03 8.25 16 4 H 0.03 1.19 2.93 -2.39 -0.01 1.19 16 5 C -0.50 -25.82 5.79 25.60 0.15 -25.67 16 6 H 0.03 2.04 7.59 -2.91 -0.02 2.01 16 7 C 0.03 1.82 4.79 84.65 0.41 2.22 16 8 N -0.94 -55.88 13.96 21.45 0.30 -55.58 16 9 Si 0.89 41.43 24.67 68.60 1.69 43.12 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.21 -9.01 4.61 99.48 0.46 -8.55 16 13 N -0.64 -24.66 6.39 -452.09 -2.89 -27.55 16 14 C 0.03 1.02 2.06 3.53 0.01 1.02 16 15 C -0.06 -2.00 4.69 29.85 0.14 -1.86 16 16 C -0.05 -1.82 4.89 -19.88 -0.10 -1.92 16 17 C -0.13 -5.53 7.18 22.28 0.16 -5.37 16 18 C -0.10 -3.94 10.04 22.25 0.22 -3.72 16 19 C -0.21 -7.33 9.07 22.36 0.20 -7.13 16 20 C 0.11 3.44 6.68 22.51 0.15 3.59 16 21 O -0.33 -9.40 10.50 -92.44 -0.97 -10.37 16 22 C 0.02 0.40 9.87 113.37 1.12 1.52 16 23 C -0.15 -4.74 9.66 22.37 0.22 -4.52 16 24 C -0.16 -4.05 10.17 30.62 0.31 -3.73 16 25 C -0.15 -3.73 8.97 30.62 0.27 -3.46 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 2.19 5.75 -2.39 -0.01 2.18 16 28 H 0.04 1.36 7.57 -2.39 -0.02 1.34 16 29 H 0.03 1.49 4.70 -2.38 -0.01 1.48 16 30 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.33 14.03 7.89 -89.69 -0.71 13.32 16 33 H 0.07 2.26 6.03 -2.39 -0.01 2.24 16 34 H 0.10 2.42 8.09 -2.39 -0.02 2.40 16 35 H 0.13 5.99 3.24 -2.91 -0.01 5.98 16 36 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.14 4.00 6.28 -2.91 -0.02 3.98 16 38 H 0.05 1.07 7.17 -2.39 -0.02 1.06 16 39 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 40 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.09 2.43 7.20 -2.39 -0.02 2.41 16 Total: -1.00 -61.56 338.92 2.30 -59.26 By element: Atomic # 1 Polarization: 40.50 SS G_CDS: 0.04 Total: 40.54 kcal Atomic # 6 Polarization: -53.55 SS G_CDS: 4.13 Total: -49.42 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -2.59 Total: -83.13 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.97 Total: -10.37 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.69 Total: 43.12 kcal Total: -61.56 2.30 -59.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.276 kcal (2) G-P(sol) polarization free energy of solvation -61.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds