Wall clock time and date at job start Tue Mar 31 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47690 * 2 1 4 4 H 1.08994 * 109.47271 * 177.52401 * 3 2 1 5 5 C 1.50705 * 109.46933 * 57.52860 * 3 2 1 6 6 H 1.07999 * 119.99899 * 240.00071 * 5 3 2 7 7 C 1.37873 * 120.00296 * 59.99707 * 5 3 2 8 8 N 1.31518 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00308 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47079 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47052 * 120.00275 * 9 7 5 12 12 H 1.48493 * 109.47571 * 240.00391 * 9 7 5 13 13 N 1.46902 * 109.47000 * 297.53254 * 3 2 1 14 14 C 1.46899 * 110.99195 * 274.49409 * 13 3 2 15 15 H 1.08995 * 109.47675 * 34.42059 * 14 13 3 16 16 C 1.50708 * 109.46728 * 154.41763 * 14 13 3 17 17 C 1.38285 * 119.96972 * 39.99857 * 16 14 13 18 18 C 1.38244 * 120.11169 * 179.97438 * 17 16 14 19 19 C 1.38166 * 120.05451 * 0.02562 * 18 17 16 20 20 C 1.38712 * 119.94262 * 359.97438 * 19 18 17 21 21 O 1.35904 * 120.05167 * 180.02562 * 20 19 18 22 22 C 1.42899 * 117.00330 * 0.02562 * 21 20 19 23 23 C 1.38119 * 119.97124 * 219.97687 * 16 14 13 24 24 C 1.53002 * 109.47424 * 274.41583 * 14 13 3 25 25 C 1.52998 * 117.49703 * 248.75096 * 24 14 13 26 26 C 1.52995 * 117.49786 * 180.09352 * 24 14 13 27 27 H 1.08996 * 109.47076 * 294.56369 * 1 2 3 28 28 H 1.08997 * 109.46958 * 54.55537 * 1 2 3 29 29 H 1.08990 * 109.47571 * 174.55838 * 1 2 3 30 30 H 1.08996 * 109.46983 * 239.99644 * 2 1 3 31 31 H 1.09001 * 109.46713 * 120.00272 * 2 1 3 32 32 H 0.96996 * 120.00414 * 179.97438 * 8 7 5 33 33 H 1.00900 * 110.99597 * 150.54733 * 13 3 2 34 34 H 1.07997 * 119.94804 * 359.72413 * 17 16 14 35 35 H 1.08000 * 119.97380 * 179.97438 * 18 17 16 36 36 H 1.08005 * 120.03346 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.46882 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.47373 * 300.00254 * 22 21 20 39 39 H 1.09001 * 109.46629 * 60.00562 * 22 21 20 40 40 H 1.07996 * 120.02810 * 359.97438 * 23 16 14 41 41 H 1.09000 * 115.55154 * 34.42182 * 24 14 13 42 42 H 1.09002 * 117.50263 * 0.02562 * 25 24 14 43 43 H 1.09000 * 117.49744 * 145.02106 * 25 24 14 44 44 H 1.09003 * 117.49799 * 214.97975 * 26 24 14 45 45 H 1.08995 * 117.50295 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1291 1.4427 0.0444 5 6 1.4884 2.1703 1.1987 6 1 0.8724 3.0468 1.0619 7 6 1.7700 1.7174 2.4701 8 7 2.5206 0.6504 2.6369 9 14 1.0868 2.6200 3.9560 10 1 0.2793 3.7807 3.5019 11 1 0.2290 1.6986 4.7436 12 1 2.2083 3.0982 4.8036 13 7 1.5998 2.1175 -1.2282 14 6 2.5357 1.8651 -2.3319 15 1 2.9424 0.8580 -2.2404 16 6 1.8096 1.9961 -3.6460 17 6 0.8760 3.0009 -3.8223 18 6 0.2086 3.1241 -5.0267 19 6 0.4727 2.2426 -6.0574 20 6 1.4087 1.2339 -5.8830 21 8 1.6705 0.3660 -6.8956 22 6 0.9452 0.5513 -8.1128 23 6 2.0775 1.1127 -4.6734 24 6 3.6767 2.8829 -2.2761 25 6 3.7440 3.9304 -3.3892 26 6 4.7616 2.7876 -3.3506 27 1 -0.3633 0.4272 0.9346 28 1 -0.3633 0.5959 -0.8372 29 1 -0.3634 -1.0229 -0.0974 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 2.7190 0.3319 3.5313 33 1 1.4812 3.1076 -1.0739 34 1 0.6650 3.6881 -3.0164 35 1 -0.5203 3.9094 -5.1617 36 1 -0.0486 2.3394 -6.9983 37 1 1.2485 -0.2064 -8.8353 38 1 -0.1230 0.4591 -7.9169 39 1 1.1568 1.5423 -8.5145 40 1 2.8072 0.3286 -4.5355 41 1 3.9840 3.1902 -1.2765 42 1 2.9752 3.8948 -4.1610 43 1 4.0960 4.9268 -3.1219 44 1 5.7826 3.0326 -3.0581 45 1 4.6627 1.9996 -4.0972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:54 Heat of formation + Delta-G solvation = 10.836439 kcal Electronic energy + Delta-G solvation = -23627.459647 eV Core-core repulsion = 20417.918162 eV Total energy + Delta-G solvation = -3209.541484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.21063 -38.62857 -36.45064 -35.47676 -32.56765 -31.16242 -30.53527 -29.47914 -27.37625 -26.53801 -24.46243 -23.25219 -22.53649 -21.75407 -21.69507 -19.84596 -18.79225 -17.48330 -16.43649 -16.10338 -15.78141 -15.69021 -15.44931 -14.88246 -14.45058 -14.08009 -13.72895 -13.40916 -13.15941 -12.82748 -12.64442 -12.42957 -12.06015 -11.87536 -11.66476 -11.49402 -11.33881 -10.98579 -10.95044 -10.88257 -10.71855 -10.65620 -10.39562 -10.28602 -9.85440 -9.74936 -9.58101 -9.32908 -8.76132 -8.57784 -8.45790 -7.95354 -7.24017 -6.00616 -4.05505 1.55431 1.69310 3.28890 3.29745 3.37585 3.40895 3.99255 4.10576 4.41767 4.85991 4.96934 5.03346 5.06529 5.09487 5.20850 5.25294 5.32259 5.32743 5.38696 5.55747 5.62319 5.69592 5.74745 5.89876 6.10203 6.11514 6.21509 6.27007 6.40075 6.47218 6.54609 6.57510 6.70173 6.75527 6.90157 6.92838 7.03521 7.29066 7.34788 7.51493 7.53629 7.76663 7.82016 7.86901 8.27881 8.40425 8.67281 9.03761 9.59157 11.05448 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021593 B = 0.004231 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.429764 B = 6616.469243 C = 6991.661596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.102 4.102 3 C 0.216 3.784 4 H 0.004 0.996 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.671 5.671 14 C 0.152 3.848 15 H 0.084 0.916 16 C -0.007 4.007 17 C -0.127 4.127 18 C -0.088 4.088 19 C -0.220 4.220 20 C 0.120 3.880 21 O -0.321 6.321 22 C 0.030 3.970 23 C -0.151 4.151 24 C -0.168 4.168 25 C -0.183 4.183 26 C -0.181 4.181 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.011 0.989 30 H 0.009 0.991 31 H 0.084 0.916 32 H 0.259 0.741 33 H 0.333 0.667 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.900 3.196 -17.448 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.022 0.978 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.301 5.301 14 C 0.041 3.959 15 H 0.102 0.898 16 C -0.008 4.008 17 C -0.146 4.146 18 C -0.106 4.106 19 C -0.239 4.239 20 C 0.076 3.924 21 O -0.235 6.235 22 C -0.065 4.065 23 C -0.170 4.170 24 C -0.188 4.188 25 C -0.220 4.220 26 C -0.219 4.219 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.028 0.972 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.143 0.857 41 H 0.129 0.871 42 H 0.118 0.882 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.140 2.402 -17.455 17.656 hybrid contribution 0.207 1.083 0.974 1.472 sum -0.933 3.486 -16.481 16.871 Atomic orbital electron populations 1.21429 0.97543 0.97098 1.01519 1.21429 0.95103 0.98258 0.99235 1.19145 0.93573 0.91533 0.84844 0.97831 1.21197 1.31500 1.11891 0.90307 0.92294 1.24865 0.95123 0.95004 0.98791 1.69899 1.37581 1.23195 1.21998 0.86555 0.78753 0.79815 0.82967 1.19800 1.21072 1.21228 1.60804 1.46148 1.16050 1.07053 1.20066 0.88815 0.97809 0.89222 0.89768 1.19715 0.94506 0.92552 0.94013 1.20892 0.97159 0.99472 0.97030 1.20885 0.98665 0.98080 0.92956 1.21080 1.02841 0.99019 1.00915 1.18921 0.95269 0.89927 0.88316 1.86053 1.62999 1.52445 1.21986 1.22977 0.96436 1.02277 0.84839 1.20260 1.03253 1.02315 0.91158 1.23238 0.99240 1.01053 0.95288 1.23122 1.02634 0.94059 1.02196 1.22871 0.94871 1.01553 1.02581 0.93004 0.93415 0.96990 0.97182 0.89730 0.93067 0.84846 0.85614 0.86285 0.86235 0.88635 0.92858 0.92947 0.85733 0.87136 0.88216 0.89610 0.89434 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.45 37.16 0.35 -2.34 16 2 C -0.10 -2.45 5.55 -26.73 -0.15 -2.60 16 3 C 0.22 5.17 2.11 -68.86 -0.15 5.03 16 4 H 0.00 0.11 7.53 -51.93 -0.39 -0.29 16 5 C -0.51 -13.28 7.31 -34.44 -0.25 -13.53 16 6 H 0.06 1.53 7.61 -52.49 -0.40 1.13 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.76 11.35 55.43 0.63 -24.13 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.67 -13.40 4.75 -102.17 -0.48 -13.88 16 14 C 0.15 2.65 2.38 -68.86 -0.16 2.49 16 15 H 0.08 1.61 7.00 -51.93 -0.36 1.24 16 16 C -0.01 -0.11 3.41 -104.64 -0.36 -0.47 16 17 C -0.13 -1.87 7.55 -39.56 -0.30 -2.17 16 18 C -0.09 -1.14 10.04 -39.61 -0.40 -1.53 16 19 C -0.22 -2.79 9.04 -39.43 -0.36 -3.15 16 20 C 0.12 1.71 6.69 -39.22 -0.26 1.45 16 21 O -0.32 -4.22 10.50 -19.44 -0.20 -4.43 16 22 C 0.03 0.26 9.81 101.05 0.99 1.25 16 23 C -0.15 -2.32 9.14 -39.44 -0.36 -2.68 16 24 C -0.17 -2.70 5.48 -90.62 -0.50 -3.20 16 25 C -0.18 -2.54 9.49 -26.70 -0.25 -2.80 16 26 C -0.18 -2.53 10.02 -26.70 -0.27 -2.80 16 27 H 0.05 1.25 7.36 -51.93 -0.38 0.87 16 28 H 0.05 1.05 7.52 -51.93 -0.39 0.66 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.01 0.22 7.44 -51.93 -0.39 -0.17 16 31 H 0.08 2.26 6.14 -51.93 -0.32 1.94 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.33 6.56 7.33 -39.29 -0.29 6.27 16 34 H 0.13 1.85 7.26 -52.49 -0.38 1.47 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.21 6.30 -52.48 -0.33 0.88 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 39 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 40 H 0.12 1.87 8.04 -52.49 -0.42 1.45 16 41 H 0.11 1.98 7.99 -51.93 -0.42 1.56 16 42 H 0.10 1.40 5.41 -51.93 -0.28 1.12 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.09 1.26 7.67 -51.93 -0.40 0.86 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -27.90 355.06 -9.43 -37.33 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.19 Total: 9.29 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -2.51 Total: -25.43 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.14 Total: -38.01 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.20 Total: -4.43 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.90 -9.43 -37.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.169 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds