Wall clock time and date at job start Tue Mar 31 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47690 * 2 1 4 4 H 1.08994 * 109.47271 * 177.52401 * 3 2 1 5 5 C 1.50705 * 109.46933 * 57.52860 * 3 2 1 6 6 H 1.07999 * 119.99899 * 240.00071 * 5 3 2 7 7 C 1.37873 * 120.00296 * 59.99707 * 5 3 2 8 8 N 1.31518 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00308 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47079 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47052 * 120.00275 * 9 7 5 12 12 H 1.48493 * 109.47571 * 240.00391 * 9 7 5 13 13 N 1.46902 * 109.47000 * 297.53254 * 3 2 1 14 14 C 1.46899 * 110.99195 * 274.49409 * 13 3 2 15 15 H 1.08995 * 109.47675 * 34.42059 * 14 13 3 16 16 C 1.50708 * 109.46728 * 154.41763 * 14 13 3 17 17 C 1.38285 * 119.96972 * 39.99857 * 16 14 13 18 18 C 1.38244 * 120.11169 * 179.97438 * 17 16 14 19 19 C 1.38166 * 120.05451 * 0.02562 * 18 17 16 20 20 C 1.38712 * 119.94262 * 359.97438 * 19 18 17 21 21 O 1.35904 * 120.05167 * 180.02562 * 20 19 18 22 22 C 1.42899 * 117.00330 * 0.02562 * 21 20 19 23 23 C 1.38119 * 119.97124 * 219.97687 * 16 14 13 24 24 C 1.53002 * 109.47424 * 274.41583 * 14 13 3 25 25 C 1.52998 * 117.49703 * 248.75096 * 24 14 13 26 26 C 1.52995 * 117.49786 * 180.09352 * 24 14 13 27 27 H 1.08996 * 109.47076 * 294.56369 * 1 2 3 28 28 H 1.08997 * 109.46958 * 54.55537 * 1 2 3 29 29 H 1.08990 * 109.47571 * 174.55838 * 1 2 3 30 30 H 1.08996 * 109.46983 * 239.99644 * 2 1 3 31 31 H 1.09001 * 109.46713 * 120.00272 * 2 1 3 32 32 H 0.96996 * 120.00414 * 179.97438 * 8 7 5 33 33 H 1.00900 * 110.99597 * 150.54733 * 13 3 2 34 34 H 1.07997 * 119.94804 * 359.72413 * 17 16 14 35 35 H 1.08000 * 119.97380 * 179.97438 * 18 17 16 36 36 H 1.08005 * 120.03346 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.46882 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.47373 * 300.00254 * 22 21 20 39 39 H 1.09001 * 109.46629 * 60.00562 * 22 21 20 40 40 H 1.07996 * 120.02810 * 359.97438 * 23 16 14 41 41 H 1.09000 * 115.55154 * 34.42182 * 24 14 13 42 42 H 1.09002 * 117.50263 * 0.02562 * 25 24 14 43 43 H 1.09000 * 117.49744 * 145.02106 * 25 24 14 44 44 H 1.09003 * 117.49799 * 214.97975 * 26 24 14 45 45 H 1.08995 * 117.50295 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1291 1.4427 0.0444 5 6 1.4884 2.1703 1.1987 6 1 0.8724 3.0468 1.0619 7 6 1.7700 1.7174 2.4701 8 7 2.5206 0.6504 2.6369 9 14 1.0868 2.6200 3.9560 10 1 0.2793 3.7807 3.5019 11 1 0.2290 1.6986 4.7436 12 1 2.2083 3.0982 4.8036 13 7 1.5998 2.1175 -1.2282 14 6 2.5357 1.8651 -2.3319 15 1 2.9424 0.8580 -2.2404 16 6 1.8096 1.9961 -3.6460 17 6 0.8760 3.0009 -3.8223 18 6 0.2086 3.1241 -5.0267 19 6 0.4727 2.2426 -6.0574 20 6 1.4087 1.2339 -5.8830 21 8 1.6705 0.3660 -6.8956 22 6 0.9452 0.5513 -8.1128 23 6 2.0775 1.1127 -4.6734 24 6 3.6767 2.8829 -2.2761 25 6 3.7440 3.9304 -3.3892 26 6 4.7616 2.7876 -3.3506 27 1 -0.3633 0.4272 0.9346 28 1 -0.3633 0.5959 -0.8372 29 1 -0.3634 -1.0229 -0.0974 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 2.7190 0.3319 3.5313 33 1 1.4812 3.1076 -1.0739 34 1 0.6650 3.6881 -3.0164 35 1 -0.5203 3.9094 -5.1617 36 1 -0.0486 2.3394 -6.9983 37 1 1.2485 -0.2064 -8.8353 38 1 -0.1230 0.4591 -7.9169 39 1 1.1568 1.5423 -8.5145 40 1 2.8072 0.3286 -4.5355 41 1 3.9840 3.1902 -1.2765 42 1 2.9752 3.8948 -4.1610 43 1 4.0960 4.9268 -3.1219 44 1 5.7826 3.0326 -3.0581 45 1 4.6627 1.9996 -4.0972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:53 Heat of formation + Delta-G solvation = -3.361138 kcal Electronic energy + Delta-G solvation = -23628.075300 eV Core-core repulsion = 20417.918162 eV Total energy + Delta-G solvation = -3210.157137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30006 -39.79643 -37.70362 -37.06697 -34.30557 -32.77277 -31.82865 -30.76326 -28.46151 -28.02306 -26.05660 -25.05498 -23.72354 -22.89307 -22.80400 -21.38155 -20.36367 -18.80556 -18.03729 -17.13891 -17.05021 -16.86911 -16.59902 -16.50180 -15.80333 -15.59360 -15.00155 -14.79942 -14.73804 -14.24613 -14.00838 -13.75324 -13.46098 -13.33245 -13.00276 -12.81718 -12.68128 -12.54704 -12.40198 -12.38116 -12.23971 -12.03289 -11.78247 -11.72428 -11.53248 -11.31815 -11.23578 -10.88983 -10.72578 -10.50773 -9.70271 -9.01181 -8.92953 -8.06588 -6.17692 0.46448 0.60915 1.41570 1.44785 1.54842 2.40842 2.45784 2.89457 2.90020 3.22891 3.72081 3.82152 3.95367 3.97527 4.09378 4.20982 4.26312 4.35817 4.44335 4.48643 4.54309 4.63146 4.66847 4.76703 4.77446 4.81865 4.83192 4.92726 4.99376 5.01533 5.11516 5.26489 5.30994 5.33252 5.41660 5.44058 5.57631 5.62708 5.74603 5.80226 5.83979 5.91706 5.96011 6.30220 6.54390 6.55952 6.84024 7.08556 7.50848 8.98974 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021593 B = 0.004231 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.429764 B = 6616.469243 C = 6991.661596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 C 0.227 3.773 4 H -0.032 1.032 5 C -0.517 4.517 6 H 0.058 0.942 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.952 3.048 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.664 5.664 14 C 0.159 3.841 15 H 0.058 0.942 16 C -0.016 4.016 17 C -0.139 4.139 18 C -0.081 4.081 19 C -0.213 4.213 20 C 0.117 3.883 21 O -0.340 6.340 22 C 0.019 3.981 23 C -0.169 4.169 24 C -0.189 4.189 25 C -0.162 4.162 26 C -0.171 4.171 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.029 0.971 30 H 0.014 0.986 31 H 0.056 0.944 32 H 0.259 0.741 33 H 0.335 0.665 34 H 0.122 0.878 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.285 4.519 -19.604 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C 0.118 3.882 4 H -0.014 1.014 5 C -0.556 4.556 6 H 0.077 0.923 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.778 3.222 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.293 5.293 14 C 0.048 3.952 15 H 0.076 0.924 16 C -0.017 4.017 17 C -0.158 4.158 18 C -0.099 4.099 19 C -0.232 4.232 20 C 0.072 3.928 21 O -0.255 6.255 22 C -0.075 4.075 23 C -0.188 4.188 24 C -0.209 4.209 25 C -0.198 4.198 26 C -0.209 4.209 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.166 0.834 36 H 0.168 0.832 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.529 3.734 -19.640 20.151 hybrid contribution 0.654 0.630 1.507 1.760 sum -1.875 4.363 -18.133 18.744 Atomic orbital electron populations 1.21279 0.96104 0.98210 1.00660 1.21312 0.96245 0.98083 0.98001 1.18857 0.91282 0.91835 0.86211 1.01412 1.21452 1.31104 1.11827 0.91170 0.92344 1.25589 0.95462 0.95698 1.01410 1.70036 1.38745 1.24510 1.22408 0.85601 0.78061 0.78824 0.79714 1.18957 1.21043 1.21084 1.60705 1.46864 1.15796 1.05960 1.19905 0.89073 0.96790 0.89418 0.92424 1.19450 0.95433 0.93801 0.93014 1.20936 0.97480 0.99317 0.98037 1.21202 0.98306 0.98475 0.91935 1.21419 1.01928 0.97792 1.02029 1.19006 0.95205 0.90428 0.88195 1.86035 1.63939 1.52407 1.23070 1.23317 0.96730 1.03999 0.83425 1.20256 1.04030 1.02405 0.92147 1.22973 1.00324 1.02646 0.94991 1.23142 1.02129 0.94198 1.00356 1.22931 0.95091 1.01728 1.01125 0.94800 0.92836 0.95147 0.96720 0.92575 0.93185 0.84689 0.85956 0.83352 0.83178 0.86574 0.91886 0.91490 0.86639 0.89637 0.87850 0.88176 0.88231 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 9.45 71.98 0.68 -4.11 16 2 C -0.10 -4.87 5.55 30.59 0.17 -4.70 16 3 C 0.23 11.28 2.11 44.17 0.09 11.38 16 4 H -0.03 -1.78 7.53 -2.39 -0.02 -1.79 16 5 C -0.52 -27.50 7.31 25.60 0.19 -27.31 16 6 H 0.06 3.06 7.61 -2.91 -0.02 3.04 16 7 C 0.02 0.95 5.30 84.65 0.45 1.40 16 8 N -0.92 -52.68 11.35 21.45 0.24 -52.44 16 9 Si 0.95 43.34 29.54 68.60 2.03 45.37 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 N -0.66 -27.30 4.75 -477.15 -2.26 -29.56 16 14 C 0.16 5.75 2.38 44.17 0.11 5.86 16 15 H 0.06 2.35 7.00 -2.39 -0.02 2.33 16 16 C -0.02 -0.51 3.41 -19.88 -0.07 -0.58 16 17 C -0.14 -3.90 7.55 22.28 0.17 -3.73 16 18 C -0.08 -1.85 10.04 22.25 0.22 -1.63 16 19 C -0.21 -4.71 9.04 22.37 0.20 -4.51 16 20 C 0.12 3.11 6.69 22.51 0.15 3.26 16 21 O -0.34 -8.31 10.50 -92.46 -0.97 -9.28 16 22 C 0.02 0.27 9.81 113.37 1.11 1.39 16 23 C -0.17 -5.16 9.14 22.36 0.20 -4.96 16 24 C -0.19 -6.27 5.48 -10.80 -0.06 -6.33 16 25 C -0.16 -4.32 9.49 30.62 0.29 -4.03 16 26 C -0.17 -4.74 10.02 30.62 0.31 -4.44 16 27 H 0.03 1.63 7.36 -2.39 -0.02 1.62 16 28 H 0.05 2.35 7.52 -2.39 -0.02 2.33 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.01 0.68 7.44 -2.39 -0.02 0.66 16 31 H 0.06 3.12 6.14 -2.39 -0.01 3.11 16 32 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.33 13.48 7.33 -89.69 -0.66 12.83 16 34 H 0.12 3.46 7.26 -2.91 -0.02 3.44 16 35 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.15 2.36 6.30 -2.91 -0.02 2.34 16 37 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 39 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 40 H 0.12 3.60 8.04 -2.91 -0.02 3.58 16 41 H 0.09 3.25 7.99 -2.39 -0.02 3.23 16 42 H 0.10 2.74 5.41 -2.39 -0.01 2.72 16 43 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.09 2.56 7.67 -2.39 -0.02 2.54 16 Total: -1.00 -61.18 355.06 3.57 -57.61 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.32 Total: 31.35 kcal Atomic # 6 Polarization: -47.27 SS G_CDS: 4.22 Total: -43.05 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -2.02 Total: -82.00 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.97 Total: -9.28 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -61.18 3.57 -57.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.252 kcal (2) G-P(sol) polarization free energy of solvation -61.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds